Disulfide bond influence on protein structural dynamics probed with 2D-IR vibrational echo spectroscopy

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 49, 2007, Pages 19309-19314

  Ishikawa, Haruto ^a   Kim, Seongheun ^a   Kwak, Kyungwon ^a   Wakasugi, Keisuke ^b   Fayer, Michael D ^a  

^a STANFORD UNIVERSITY   (United States)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

FTIR; Neuroglobin; Ultrafast 2D IR

Indexed keywords

DISULFIDE; HEME; MYOGLOBIN; NEUROGLOBIN; OXYGEN;

ARTICLE; BINDING AFFINITY; DISULFIDE BOND; GENETIC CONSERVATION; INFRARED SPECTROSCOPY; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STABILITY; PROTEIN STRUCTURE; VERTEBRATE; VIBRATION;

CARBON MONOXIDE; DISULFIDES; GLOBINS; HUMANS; NERVE TISSUE PROTEINS; OXYGEN; PROTEIN CONFORMATION; SPECTROPHOTOMETRY, INFRARED; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; VIBRATION;

VERTEBRATA;

EID: 37649012488     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0709760104     Document Type: Article

References (48)

1. Barford D (2004) Curr Opin Struct Biol 14:679-686.
2. Liu H, Colavitti R, Rovira II, Finkel T (2005) Circ Res 97:967-974.
3. Hogg PJ (2003) Trends Biochem Sci 28:210-214.
4. Kim SO, Merchant K, Nudelman R, Beyer WF Jr, Keng T, DeAngelo J, Hausladen A, Stamler JS (2002) Cell 109:383-396.
5. Betz SF, Marmorino JL, Saunders AJ, Doyle DF, Young GB, Pielak GJ (1996) Biochemistry 35:7422-7428.
6. Beeser SA, Oas TG, Goldenberg DP (1998) J Mol Biol 284:1581-1596.
7. Kelley JJ III, Caputo TM, Eaton SF, Laue TM, Bushweller JH (1997) Biochemistry 36:5029-5044.
8. Tidor B, Karplus M (1993) Proteins 15:71-79.
9. Moghaddam ME, Naderi-Manesh H (2006) Proteins 63:188-196.
10. Burmester T, Weich B, Reinhardt S, Hankeln T (2000) Nature 407:520-523.
11. Pesce A, Dewilde S, Nardini M, Moens L, Ascenzi P, Hankeln T, Burmester T, Bolognesi M (2003) Structure (London) 11:1087-1095.
12. Vallone B, Nienhaus K, Brunori M, Nienhaus GU (2004) Proteins 56:85-92.
13. Vallone B, Nienhaus K, Matthes A, Brunori M, Nienhaus GU (2004) Proc Natl Acad Sci USA 101:17351-17356.
14. Vinck E, Van Doorslaer S, Dewilde S, Moens L (2004) J Am Chem Soc 126:4516-4517.
15. Hamdane D, Kiger L, Dewilde S, Green BN, Pesce A, Uzan J, Burmester T, Hankeln T, Bolognesi M, Moens L, et al. (2003) J Biol Chem 278:51713-51721.
16. Kundu S, Trent JT III, Hargrove MS (2003) Trends Plants Sci 8:387-393.
17. Hamdane D, Kiger L, Dewilde S, Uzan J, Burmester T, Hankeln T, Moens L, Marden MC (2005) FEBS J 272:2076-2084.
18. Finkelstein IJ, Ishikawa H, Kim S, Massari AM, Fayer MD (2007) Proc Natl Acad Sci USA 104:2637-2642.
19. Massari AM, Finkelstein IJ, Fayer MD (2006) J Am Chem Soc 128:3990-3997.
20. Chung HS, Khalil M, Smith AW, Ganim Z, Tokmakoff A (2005) Proc Natl Acad Sci USA 102:612-617.
21. Mukherjee P, Kass I, Arkin IT, Zanni MT (2006) Proc Natl Acad Sci USA 103:3528-3533.
22. Volkov V, Hamm P (2004) Biophys J 87:4213-4225.
23. Fang C, Hochstrasser RM (2005) J Phys Chem B 109:18652-18663.
24. Finkelstein IJ, Zheng J, Ishikawa H, Kim S, Kwak K, Fayer MD (2007) Phys Chem Chem Phys 9:1533-1549.
25. Hartmann H, Parak F, Steigemann W, Petsko GA, Ponzi DR, Frauenfelder H (1982) Proc Natl Acad Sci USA 79:4967-4971.
26. Morikis D, Champion PM, Springer BA, Sligar SG (1989) Biochemistry 28:4791-4800.
27. Sawai H, Makino M, Mizutani Y, Ohta T, Sugimoto H, Uno T, Kawada N, Yoshizato K, Kitagawa T, Shiro Y (2005) Biochemistry 44:13257-13265.
28. Ishikawa H, Finkelstein IJ, Kim S, Kwak K, Chung JK, Wakasugi K, Massari AM, Fayer MD (2007) Proc Natl Acad Sci USA 104:16116-16121.
29. Merchant KA, Noid WG, Akiyama R, Finkelstein I, Goun A, McClain BL, Loring RF, Fayer MD (2003) J Am Chem Soc 125:13804-13818.
30. Augspurger JD, Dykstra CE, Oldfield E (1991) J Am Chem Soc 113:2447-2451.
31. Spiro TG, Wasbotten IH (2005) J Inorg Biochem 99:34-44.
32. Park ES, Boxer SG (2002) J Phys Chem B 106:5800-5806.
33. Uchida T, Unno M, Ishimori K, Morishima I (1997) Biochemistry 36:324-332.
34. Anselmi M, Brunori M, Vallone B, Di Nola A (2007) Biophys J 93:434-441.
35. Zheng J, Kwak K, Fayer MD (2007) Acc Chem Res 40:75-83.
36. Park S, Kwak K, Fayer MD (2007) Laser Phys Lett 4:704-718.
37. Rector KD, Kwok AS, Ferrante C, Tokmakoff A, Rella CW, Fayer MD (1997) J Chem Phys 106:10027.
38. Mukamel S (2000) Annu Rev Phys Chem 51:691-729.
39. Kwak K, Park S, Finkelstein IJ, Fayer MD (2007) J Chem Phys 127:124503.
40. Park S, Fayer MD (2007) Proc Natl Acad Sci USA 104:16731-16738.
41. Woutersen S, Pfister R, Hamm P, Mu Y, Kosov DS, Stock G (2002) J Chem Phys 117:6833-6840.
42. Bai YS, Fayer MD (1989) Phys Rev B 39:11066.
43. Wood MJ, Storz G, Tjandra N (2004) Nature 430:917-921.
44. Wakasugi K, Nakano T, Morishima I (2003) J Biol Chem 278:36505-36512.
45. Frauenfelder H (1995) Nat Struct Biol 2:821-823.
46. Fago A, Hundahl C, Dewilde S, Gilany K, Moens L, Weber RE (2004) J Biol Chem 279:44417-44426.
47. Asbury JB, Steinel T, Fayer MD (2004) J Lumin 107:271-286.
48. Zanni MT, Gnanakaran S, Stenger J, Hochstrasser RM (2001) J Phys Chem B 105:6520-6535.