-
1
-
-
0021766921
-
Cavities in proteins: Structure of a metmyoglobin-xenon complex solved to 1.9 angstroms
-
R.F. Tilton, I.D. Kuntz, and G.A. Petsko Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 angstroms Biochemistry 23 1984 2849 2857
-
(1984)
Biochemistry
, vol.23
, pp. 2849-2857
-
-
Tilton, R.F.1
Kuntz, I.D.2
Petsko, G.A.3
-
2
-
-
0034867130
-
Cavities and packing defects in the structural dynamics of myoglobin
-
M. Brunori, and Q.H. Gibson Cavities and packing defects in the structural dynamics of myoglobin EMBO Rep. 2 2001 674 679
-
(2001)
EMBO Rep.
, vol.2
, pp. 674-679
-
-
Brunori, M.1
Gibson, Q.H.2
-
3
-
-
2442705539
-
Heme-ligand tunneling in group I truncated hemoglobins
-
M. Milani, A. Pesce, Y. Ouellet, S. Dewilde, J. Friedman, P. Ascenzi, M. Guertin, and M. Bolognesi Heme-ligand tunneling in group I truncated hemoglobins J. Biol. Chem. 279 2004 21520 21525
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 21520-21525
-
-
Milani, M.1
Pesce, A.2
Ouellet, Y.3
Dewilde, S.4
Friedman, J.5
Ascenzi, P.6
Guertin, M.7
Bolognesi, M.8
-
4
-
-
4944223384
-
Neuroglobin and cytoglobin: Two new entries in the hemoglobin superfamily
-
P. Ascenzi, A. Bocedi, D. de Sanctis, A. Pesce, M. Bolognesi, M.C. Marden, S. Dewilde, L. Moens, T. Hankeln, and T. Burmester Neuroglobin and cytoglobin: two new entries in the hemoglobin superfamily BAMBEd 32 2004 305 313
-
(2004)
BAMBEd
, vol.32
, pp. 305-313
-
-
Ascenzi, P.1
Bocedi, A.2
De Sanctis, D.3
Pesce, A.4
Bolognesi, M.5
Marden, M.C.6
Dewilde, S.7
Moens, L.8
Hankeln, T.9
Burmester, T.10
-
5
-
-
0025600834
-
Enhanced sampling in molecular dynamics: Use of the time-dependent Hartree approximation for a simulation of carbon monoxide diffusion through myoglobin
-
R. Elber, and M. Karplus Enhanced sampling in molecular dynamics: use of the time-dependent Hartree approximation for a simulation of carbon monoxide diffusion through myoglobin J. Am. Chem. Soc. 112 1990 9161 9175
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 9161-9175
-
-
Elber, R.1
Karplus, M.2
-
6
-
-
0030031593
-
Distal cavity fluctuations in myoglobin: Protein motion and ligand diffusion
-
M.L. Carlson, R.M. Regan, and Q.H. Gibson Distal cavity fluctuations in myoglobin: protein motion and ligand diffusion Biochemistry 35 1996 1125 1136
-
(1996)
Biochemistry
, vol.35
, pp. 1125-1136
-
-
Carlson, M.L.1
Regan, R.M.2
Gibson, Q.H.3
-
7
-
-
0030821996
-
Initial trajectory of carbon monoxide after photodissociation from myoglobin at cryogenic temperatures
-
T. Teng, V. Srajer, and K. Moffat Initial trajectory of carbon monoxide after photodissociation from myoglobin at cryogenic temperatures Biochemistry 36 1997 12087 12100
-
(1997)
Biochemistry
, vol.36
, pp. 12087-12100
-
-
Teng, T.1
Srajer, V.2
Moffat, K.3
-
8
-
-
0031880931
-
Computer simulations of carbon monoxide photodissociation in myoglobin: Structural interpretation of the B states
-
J. Meller, and R. Elber Computer simulations of carbon monoxide photodissociation in myoglobin: structural interpretation of the B states Biophys. J. 74 1998 789 802
-
(1998)
Biophys. J.
, vol.74
, pp. 789-802
-
-
Meller, J.1
Elber, R.2
-
9
-
-
0034519834
-
Trapping intermediates in the crystal: Ligand binding to myoglobin
-
I. Schlichting, and K. Chu Trapping intermediates in the crystal: ligand binding to myoglobin Curr. Opin. Struck. Biol. 10 2000 744 752
-
(2000)
Curr. Opin. Struck. Biol.
, vol.10
, pp. 744-752
-
-
Schlichting, I.1
Chu, K.2
-
11
-
-
0035923445
-
Protein conformational relaxation and ligand migration in myoglobin: A nanosecond to millisecond molecular movie from time-resolved Laue X-ray diffraction
-
V. Srajer, Z. Ren, T. Teng, M. Schmidt, T. Ursby, D. Bourgeois, C. Pradervand, W. Schildkamp, M. Wulff, and K. Moffat Protein conformational relaxation and ligand migration in myoglobin: a nanosecond to millisecond molecular movie from time-resolved Laue X-ray diffraction Biochemistry 40 2001 13802 13815
-
(2001)
Biochemistry
, vol.40
, pp. 13802-13815
-
-
Srajer, V.1
Ren, Z.2
Teng, T.3
Schmidt, M.4
Ursby, T.5
Bourgeois, D.6
Pradervand, C.7
Schildkamp, W.8
Wulff, M.9
Moffat, K.10
-
12
-
-
0038047431
-
Watching a protein as it functions with 150-ps time-resolved X-ray crystallography
-
F. Schotte, M. Lim, T.A. Jackson, A.V. Smirnov, J. Soman, J.S. Olson, G.N. Phillips Jr., M. Wulff, and P.A. Anfinrud Watching a protein as it functions with 150-ps time-resolved X-ray crystallography Science 300 2003 1944 1947
-
(2003)
Science
, vol.300
, pp. 1944-1947
-
-
Schotte, F.1
Lim, M.2
Jackson, T.A.3
Smirnov, A.V.4
Soman, J.5
Olson, J.S.6
Phillips Jr., G.N.7
Wulff, M.8
Anfinrud, P.A.9
-
13
-
-
2942655520
-
Extended molecular dynamics simulation of the carbon monoxide migration in sperm whale myoglobin
-
C. Bossa, M. Anselmi, D. Roccatano, A. Amadei, B. Vallone, M. Brunori, and A. Di Nola Extended molecular dynamics simulation of the carbon monoxide migration in sperm whale myoglobin Biophys. J. 86 2004 3855 3862
-
(2004)
Biophys. J.
, vol.86
, pp. 3855-3862
-
-
Bossa, C.1
Anselmi, M.2
Roccatano, D.3
Amadei, A.4
Vallone, B.5
Brunori, M.6
Di Nola, A.7
-
14
-
-
0346057931
-
Competition with Xenon elicits ligand migration and escape pathways in myoglobin
-
C. Tetreau, Y. Blouquit, E. Novikov, E. Quiniou, and D. Lavalette Competition with Xenon elicits ligand migration and escape pathways in myoglobin Biophys. J. 86 2004 435 447
-
(2004)
Biophys. J.
, vol.86
, pp. 435-447
-
-
Tetreau, C.1
Blouquit, Y.2
Novikov, E.3
Quiniou, E.4
Lavalette, D.5
-
15
-
-
1842815139
-
Kinetic proofreading by the cavity system of myoglobin: Protection from poisoning
-
W. Radding, and G.N. Phillips Jr. Kinetic proofreading by the cavity system of myoglobin: protection from poisoning BioEssays 26 2004 422 433
-
(2004)
BioEssays
, vol.26
, pp. 422-433
-
-
Radding, W.1
Phillips Jr., G.N.2
-
16
-
-
1642377942
-
Mapping protein matrix cavities in human cytoglobin through Xe atom binding
-
D. de Sanctis, S. Dewilde, A. Pesce, L. Moens, P. Ascenzi, T. Hankeln, T. Burmester, and M. Bolognesi Mapping protein matrix cavities in human cytoglobin through Xe atom binding BBRC 316 2004 1217 1221
-
(2004)
BBRC
, vol.316
, pp. 1217-1221
-
-
De Sanctis, D.1
Dewilde, S.2
Pesce, A.3
Moens, L.4
Ascenzi, P.5
Hankeln, T.6
Burmester, T.7
Bolognesi, M.8
-
17
-
-
1042286374
-
Crystal structure of cytoglobin: The fourth globin type discovered in man displays heme hexa-coordination
-
D. de Sanctis, S. Dewilde, A. Pesce, L. Moens, P. Ascenzi, T. Hankeln, T. Burmester, and M. Bolognesi Crystal structure of cytoglobin: the fourth globin type discovered in man displays heme hexa-coordination J. Mol. Biol. 336 2004 917 927
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 917-927
-
-
De Sanctis, D.1
Dewilde, S.2
Pesce, A.3
Moens, L.4
Ascenzi, P.5
Hankeln, T.6
Burmester, T.7
Bolognesi, M.8
-
19
-
-
0036099514
-
New insights into the allosteric mechanism of human hemoglobin from molecular dynamics simulations
-
L. Mouawad, D. Perahia, C.H. Robert, and C. Guilbert New insights into the allosteric mechanism of human hemoglobin from molecular dynamics simulations Biophys. J. 82 2002 3224 3245
-
(2002)
Biophys. J.
, vol.82
, pp. 3224-3245
-
-
Mouawad, L.1
Perahia, D.2
Robert, C.H.3
Guilbert, C.4
-
20
-
-
0029633176
-
A method to explore transition paths in macromolecules. Applications to hemoglobin and phosphoglycerate kinase
-
C. Guilbert, D. Perahia, and L. Mouawad A method to explore transition paths in macromolecules. Applications to hemoglobin and phosphoglycerate kinase Comp. Phys. Comm. 91 1995 263 273
-
(1995)
Comp. Phys. Comm.
, vol.91
, pp. 263-273
-
-
Guilbert, C.1
Perahia, D.2
Mouawad, L.3
-
21
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
B.R. Brooks, R.E. Bruccoleri, B.D. Olafson, D.J. States, S. Swaminathan, and M. Karplus CHARMM: a program for macromolecular energy, minimization, and dynamics calculations J. Comp. Chem. 4 1983 187 217
-
(1983)
J. Comp. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
22
-
-
0032190305
-
Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape
-
J. Liang, H. Edelsbrunner, P. Fu, P.V. Sudhakar, and S. Subramaniam Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape Proteins 33 1998 1 17
-
(1998)
Proteins
, vol.33
, pp. 1-17
-
-
Liang, J.1
Edelsbrunner, H.2
Fu, P.3
Sudhakar, P.V.4
Subramaniam, S.5
-
23
-
-
0032189626
-
Analytical shape computation of macromolecules: II. Inacessible cavities in proteins
-
J. Liang, H. Edelsbrunner, P. Fu, P.V. Sudhakar, and S. Subramaniam Analytical shape computation of macromolecules: II. Inacessible cavities in proteins Proteins: Struct. Func. Gen. 33 1998 18 29
-
(1998)
Proteins: Struct. Func. Gen.
, vol.33
, pp. 18-29
-
-
Liang, J.1
Edelsbrunner, H.2
Fu, P.3
Sudhakar, P.V.4
Subramaniam, S.5
-
24
-
-
33544456104
-
-
E.C. Liong, Rice University, Houston, TX 1999.
-
E.C. Liong, Rice University, Houston, TX 1999.
-
-
-
-
26
-
-
0034091637
-
The role of cavities in protein dynamics: Crystal structure of a novel photolytic intermediate of myoglobin
-
M. Brunori, B. Vallone, F. Cutruzzola, C. Travaglini-Allocatelli, J. Berendzen, K. Chu, R.M. Sweet, and I. Schlichting The role of cavities in protein dynamics: crystal structure of a novel photolytic intermediate of myoglobin Proc. Nat. Acad. Sci. U. S. A. 97 2000 2058 2063
-
(2000)
Proc. Nat. Acad. Sci. U. S. A.
, vol.97
, pp. 2058-2063
-
-
Brunori, M.1
Vallone, B.2
Cutruzzola, F.3
Travaglini-Allocatelli, C.4
Berendzen, J.5
Chu, K.6
Sweet, R.M.7
Schlichting, I.8
-
27
-
-
0041758430
-
Complex landscape of protein structural dynamics unveiled by nanosecond Laue crystallography
-
D. Bourgeois, B. Vallone, F. Schotte, A. Arcovito, A.E. Miele, G. Sciara, M. Wulff, P.A. Anfinrud, and M. Brunori Complex landscape of protein structural dynamics unveiled by nanosecond Laue crystallography Proc. Nat. Acad. Sci. U. S. A. 100 2003 8704 8709
-
(2003)
Proc. Nat. Acad. Sci. U. S. A.
, vol.100
, pp. 8704-8709
-
-
Bourgeois, D.1
Vallone, B.2
Schotte, F.3
Arcovito, A.4
Miele, A.E.5
Sciara, G.6
Wulff, M.7
Anfinrud, P.A.8
Brunori, M.9
-
28
-
-
0034708201
-
Structure of a ligand-binding intermediate in wild-type carbonmonoxy myoglobin
-
K. Chu, J. Vojtchovsky, B.H. McMahon, R.M. Sweet, J. Berendzen, and I. Schlichting Structure of a ligand-binding intermediate in wild-type carbonmonoxy myoglobin Nature 403 2000 921 923
-
(2000)
Nature
, vol.403
, pp. 921-923
-
-
Chu, K.1
Vojtchovsky, J.2
McMahon, B.H.3
Sweet, R.M.4
Berendzen, J.5
Schlichting, I.6
-
29
-
-
0021683974
-
The crystal structure of human deoxyhaemoglobin at 1.74 angstroms resolution
-
G. Fermi, M.F. Perutz, B. Shaanan, and R. Fourme The crystal structure of human deoxyhaemoglobin at 1.74 angstroms resolution J. Mol. Biol. 175 1984 159 174
-
(1984)
J. Mol. Biol.
, vol.175
, pp. 159-174
-
-
Fermi, G.1
Perutz, M.F.2
Shaanan, B.3
Fourme, R.4
-
30
-
-
0024562782
-
Myoglobin and haemoglobin: Role of distal residues in reactions with haem ligands
-
M.F. Perutz Myoglobin and haemoglobin: role of distal residues in reactions with haem ligands Trends Biochem. Sci. 14 1989 42 44
-
(1989)
Trends Biochem. Sci.
, vol.14
, pp. 42-44
-
-
Perutz, M.F.1
-
31
-
-
0020490793
-
Reactivity of ferric Aplysia and sperm whale myoglobins towards imidazole
-
M. Bolognesi, E. Cannillo, P. Ascenzi, G.M. Giacometti, A. Merli, and M. Brunori Reactivity of ferric Aplysia and sperm whale myoglobins towards imidazole J. Mol. Biol. 158 1982 305 315
-
(1982)
J. Mol. Biol.
, vol.158
, pp. 305-315
-
-
Bolognesi, M.1
Cannillo, E.2
Ascenzi, P.3
Giacometti, G.M.4
Merli, A.5
Brunori, M.6
-
32
-
-
0025785220
-
Migration of small molecules through the structure of hemoglobin: Evidence for gating in a protein electron-transfert reaction
-
J. Feitelson, and G. McLendon Migration of small molecules through the structure of hemoglobin: evidence for gating in a protein electron-transfert reaction Biochemistry 30 1991 5051 5055
-
(1991)
Biochemistry
, vol.30
, pp. 5051-5055
-
-
Feitelson, J.1
McLendon, G.2
|