-
1
-
-
0011084483
-
Variations in affinities of antibodies during the immune response
-
Eisen HN, Siskind GW (1964) Variations in affinities of antibodies during the immune response. Biochemistry 3:996-1008.
-
(1964)
Biochemistry
, vol.3
, pp. 996-1008
-
-
Eisen, H.N.1
Siskind, G.W.2
-
4
-
-
64949164763
-
High-throughput isolation of immunoglobulin genes from single human B cells and expression as monoclonal antibodies
-
Liao HX, et al. (2009) High-throughput isolation of immunoglobulin genes from single human B cells and expression as monoclonal antibodies. J Virol Methods 158(1-2):171-179.
-
(2009)
J Virol Methods
, vol.158
, Issue.1-2
, pp. 171-179
-
-
Liao, H.X.1
-
5
-
-
0041689676
-
Predominant autoantibody production by early human B cell precursors
-
DOI 10.1126/science.1086907
-
Wardemann H, et al. (2003) Predominant autoantibody production by early human B cell precursors. Science 301(5638):1374-1377. (Pubitemid 37075812)
-
(2003)
Science
, vol.301
, Issue.5638
, pp. 1374-1377
-
-
Wardemann, H.1
Yurasov, S.2
Schaefer, A.3
Young, J.W.4
Meffre, E.5
Nussenzweig, M.C.6
-
6
-
-
44449118948
-
Rapid cloning of high-affinity human monoclonal antibodies against influenza virus
-
DOI 10.1038/nature06890, PII NATURE06890
-
Wrammert J, et al. (2008) Rapid cloning of high-affinity human monoclonal antibodies against influenza virus. Nature 453(7195):667-671. (Pubitemid 351769295)
-
(2008)
Nature
, vol.453
, Issue.7195
, pp. 667-671
-
-
Wrammert, J.1
Smith, K.2
Miller, J.3
Langley, W.A.4
Kokko, K.5
Larsen, C.6
Zheng, N.-Y.7
Mays, I.8
Garman, L.9
Helms, C.10
James, J.11
Air, G.M.12
Capra, J.D.13
Ahmed, R.14
Wilson, P.C.15
-
7
-
-
80052184942
-
Broadly neutralizing human antibody that recognizes the receptor-binding pocket of influenza virus hemagglutinin
-
Whittle JR, et al. (2011) Broadly neutralizing human antibody that recognizes the receptor-binding pocket of influenza virus hemagglutinin. Proc Natl Acad Sci USA 108 (34):14216-14221.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.34
, pp. 14216-14221
-
-
Whittle, J.R.1
-
9
-
-
0031868554
-
Anatomy of an antibody molecule: Structure, kinetics, thermodynamics and mutational studies of the antilysozyme antibody D1.3
-
DOI 10.1111/j.1600-065X.1998.tb01187.x
-
Braden BC, Goldman ER, Mariuzza RA, Poljak RJ (1998) Anatomy of an antibody molecule: Structure, kinetics, thermodynamics and mutational studies of the antilysozyme antibody D1.3. Immunol Rev 163:45-57. (Pubitemid 28327861)
-
(1998)
Immunological Reviews
, vol.163
, pp. 45-57
-
-
Braden, B.C.1
Goldman, E.R.2
Mariuzza, R.A.3
Poljak, R.J.4
-
10
-
-
0030821164
-
Structural insights into the evolution of an antibody combining site
-
DOI 10.1126/science.276.5319.1665
-
Wedemayer GJ, Patten PA, Wang LH, Schultz PG, Stevens RC (1997) Structural insights into the evolution of an antibody combining site. Science 276(5319):1665-1669. (Pubitemid 27421966)
-
(1997)
Science
, vol.276
, Issue.5319
, pp. 1665-1669
-
-
Wedemayer, G.J.1
Patten, P.A.2
Wang, L.H.3
Schultz, P.G.4
Stevens, R.C.5
-
11
-
-
0029991227
-
The immunological evolution of catalysis
-
Patten PA, et al. (1996) The immunological evolution of catalysis. Science 271(5252):1086-1091. (Pubitemid 26075223)
-
(1996)
Science
, vol.271
, Issue.5252
, pp. 1086-1091
-
-
Patten, P.A.1
Gray, N.S.2
Yang, P.L.3
Marks, C.B.4
Wedemayer, G.J.5
Boniface, J.J.6
Stevens, R.C.7
Schultz, P.G.8
-
12
-
-
66149181778
-
Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility
-
Babor M, Kortemme T (2009) Multi-constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility. Proteins 75(4):846-858.
-
(2009)
Proteins
, vol.75
, Issue.4
, pp. 846-858
-
-
Babor, M.1
Kortemme, T.2
-
13
-
-
0025856601
-
Kinetic maturation of an immune response
-
Foote J, Milstein C (1991) Kinetic maturation of an immune response. Nature 352(6335):530-532. (Pubitemid 21912377)
-
(1991)
Nature
, vol.352
, Issue.6335
, pp. 530-532
-
-
Foote, J.1
Milstein, C.2
-
14
-
-
0037029607
-
Very low affinity B cells form germinal centers, become memory B cells, and participate in secondary immune responses when higher affinity competition is reduced
-
DOI 10.1084/jem.20011550
-
Dal Porto JM, Haberman AM, Kelsoe G, Shlomchik MJ (2002) Very low affinity B cells form germinal centers, become memory B cells, and participate in secondary immune responses when higher affinity competition is reduced. J Exp Med 195(9):1215-1221. (Pubitemid 34517148)
-
(2002)
Journal of Experimental Medicine
, vol.195
, Issue.9
, pp. 1215-1221
-
-
Dal, P.J.M.1
Haberman, A.M.2
Kelsoe, G.3
Shlomchik, M.J.4
-
15
-
-
0032533470
-
Antigen drives very low affinity B cells to become plasmacytes and enter germinal centers
-
Dal Porto JM, Haberman AM, Shlomchik MJ, Kelsoe G (1998) Antigen drives very low affinity B cells to become plasmacytes and enter germinal centers. J Immunol 161(10):5373-5381. (Pubitemid 28519098)
-
(1998)
Journal of Immunology
, vol.161
, Issue.10
, pp. 5373-5381
-
-
Dal, P.J.M.1
Haberman, A.M.2
Shlomchik, M.J.3
Kelsoe, G.4
-
16
-
-
84860759632
-
B-cell-lineage immunogen design in vaccine development with HIV-1 as a case study
-
Haynes BF, Kelsoe G, Harrison SC, Kepler TB (2012) B-cell-lineage immunogen design in vaccine development with HIV-1 as a case study. Nat Biotechnol 30(5):423-433.
-
(2012)
Nat Biotechnol
, vol.30
, Issue.5
, pp. 423-433
-
-
Haynes, B.F.1
Kelsoe, G.2
Harrison, S.C.3
Kepler, T.B.4
-
17
-
-
79958255209
-
A dynamic T cell-limited checkpoint regulates affinity-dependent B cell entry into the germinal center
-
Schwickert TA, et al. (2011) A dynamic T cell-limited checkpoint regulates affinity-dependent B cell entry into the germinal center. J Exp Med 208(6):1243-1252.
-
(2011)
J Exp Med
, vol.208
, Issue.6
, pp. 1243-1252
-
-
Schwickert, T.A.1
-
18
-
-
0036073140
-
Role of BCR affinity in T cell-dependent antibody responses in vivo
-
DOI 10.1038/ni803
-
Shih TA, Meffre E, Roederer M, Nussenzweig MC (2002) Role of BCR affinity in T cell dependent antibody responses in vivo. Nat Immunol 3(6):570-575. (Pubitemid 34662310)
-
(2002)
Nature Immunology
, vol.3
, Issue.6
, pp. 570-575
-
-
Shih, T.-A.Y.1
Meffre, E.2
Roederer, M.3
Nussenzweig, M.C.4
-
19
-
-
80052925616
-
Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding
-
Scheid JF, et al. (2011) Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding. Science 333(6049):1633-1637.
-
(2011)
Science
, vol.333
, Issue.6049
, pp. 1633-1637
-
-
Scheid, J.F.1
-
20
-
-
80053557269
-
Epitope-specific human influenza antibody repertoires diversify by B cell intraclonal sequence divergence and interclonal convergence
-
Krause JC, et al. (2011) Epitope-specific human influenza antibody repertoires diversify by B cell intraclonal sequence divergence and interclonal convergence. J Immunol 187(7):3704-3711.
-
(2011)
J Immunol
, vol.187
, Issue.7
, pp. 3704-3711
-
-
Krause, J.C.1
-
22
-
-
34447508216
-
Phaser crystallographic software
-
DOI 10.1107/S0021889807021206, PII S0021889807021206
-
McCoy AJ, et al. (2007) Phaser crystallographic software. J Appl Cryst 40(Pt 4):658-674. (Pubitemid 47080256)
-
(2007)
Journal of Applied Crystallography
, vol.40
, Issue.4
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
23
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, et al. (2010) PHENIX: A comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66(Pt 2):213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, Issue.PART 2
, pp. 213-221
-
-
Adams, P.D.1
-
24
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley P, Cowtan K (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1):2126-2132.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, Issue.PART 12 PART 1
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
25
-
-
37349103121
-
Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard
-
DOI 10.1107/S090744490705024X, PII S090744490705024X
-
Terwilliger TC, et al. (2008) Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard. Acta Crystallogr D Biol Crystallogr 64 (Pt 1):61-69. (Pubitemid 350308678)
-
(2007)
Acta Crystallographica Section D: Biological Crystallography
, vol.64
, Issue.1
, pp. 61-69
-
-
Terwilliger, T.C.1
Grosse-Kunstleve, R.W.2
Afonine, P.V.3
Moriarty, N.W.4
Zwart, P.H.5
Hung, L.-W.6
Read, R.J.7
Adams, P.D.8
-
26
-
-
64849114224
-
Antibody recognition of a highly conserved influenza virus epitope
-
Ekiert DC, et al. (2009) Antibody recognition of a highly conserved influenza virus epitope. Science 324(5924):246-251.
-
(2009)
Science
, vol.324
, Issue.5924
, pp. 246-251
-
-
Ekiert, D.C.1
-
27
-
-
74549178560
-
MolProbity: All-atom structure validation for macromolecular crystallography
-
Chen VB, et al. (2010) MolProbity: All-atom structure validation for macromolecular crystallography. Acta Crystallogr D Biol Crystallogr 66(Pt 1):12-21.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, Issue.PART 1
, pp. 12-21
-
-
Chen, V.B.1
-
28
-
-
77953513118
-
Improved side-chain torsion potentials for the Amber ff99SB protein force field
-
Lindorff-Larsen K, et al. (2010) Improved side-chain torsion potentials for the Amber ff99SB protein force field. Proteins 78(8):1950- 1958.
-
(2010)
Proteins
, vol.78
, Issue.8
, pp. 1950-1958
-
-
Lindorff-Larsen, K.1
-
29
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen WL, et al. (1983) Comparison of simple potential functions for simulating liquid water. J Chem Phys 79:926-935.
-
(1983)
J Chem Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
-
30
-
-
33748518255
-
Comparison of multiple amber force fields and development of improved protein backbone parameters
-
DOI 10.1002/prot.21123
-
Hornak V, et al. (2006) Comparison of multiple Amber force fields and development of improved protein backbone parameters. Proteins 65(3):712-725. (Pubitemid 44583220)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.3
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
31
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell WD, et al. (1995) A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J Am Chem Soc 117:5179-5197.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
-
32
-
-
0035871686
-
A fast SHAKE algorithm to solve distance constraint equations for small molecules in molecular dynamics simulations
-
Kräutler V, van Gunsteren WF, Hünenberger PH (2001) A fast SHAKE algorithm to solve distance constraint equations for small molecules in molecular dynamics simulations. J Comput Chem 22:501-508.
-
(2001)
J Comput Chem
, vol.22
, pp. 501-508
-
-
Kräutler, V.1
Van Gunsteren, W.F.2
Hünenberger, P.H.3
-
33
-
-
22944460220
-
Gaussian split Ewald: A fast Ewald mesh method for molecular simulation
-
Shan Y, Klepeis JL, Eastwood MP, Dror RO, Shaw DE (2005) Gaussian split Ewald: A fast Ewald mesh method for molecular simulation. J Chem Phys 122(5):54101.
-
(2005)
J Chem Phys
, vol.122
, Issue.5
, pp. 54101
-
-
Shan, Y.1
Klepeis, J.L.2
Eastwood, M.P.3
Dror, R.O.4
Shaw, D.E.5
-
35
-
-
84861917277
-
Computationally efficient molecular dynamics integrators with improved sampling accuracy
-
Predescu C (2012) Computationally efficient molecular dynamics integrators with improved sampling accuracy. Mol Phys 110:967-983.
-
(2012)
Mol Phys
, vol.110
, pp. 967-983
-
-
Predescu, C.1
-
36
-
-
84871946480
-
-
Schrodinger Schrodinger, LLC, New York, Version 9.2
-
Schrodinger (2011) Maestro, (Schrodinger, LLC, New York), Version 9.2.
-
(2011)
Maestro
-
-
-
37
-
-
77957803889
-
OpenStructure: A flexible software framework for computational structural biology
-
Biasini M, et al. (2010) OpenStructure: A flexible software framework for computational structural biology. Bioinformatics 26(20):2626-2628.
-
(2010)
Bioinformatics
, vol.26
, Issue.20
, pp. 2626-2628
-
-
Biasini, M.1
|