Characterization of the Type III sulfide:quinone oxidoreductase from Caldivirga maquilingensis and its membrane binding

Biochimica et Biophysica Acta - Bioenergetics

Volumn 1827, Issue 3, 2013, Pages 266-275

  Lencina, Andrea M ^a   Ding, Ziqiao ^a   Schurig Briccio, Lici A ^a   Gennis, Robert B ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Amphiphilic helix; Caldivirga maquilingensis; Monotopic membrane protein; Sulfide:quinone oxidoreductase

Indexed keywords

AMINO ACID; MEMBRANE PROTEIN; OXIDOREDUCTASE; PROTEIN; QUERCETIN; QUINONE DERIVATIVE; SULFIDE; SULFIDE QUINONE OXIDOREDUCTASE TYPE 3; UNCLASSIFIED DRUG;

ACIDITHIOBACILLUS FERROOXIDANS; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL MEMBRANE; BACTERIUM; CALDIVIRGA MAQUILINGENSIS; CARBOXY TERMINAL SEQUENCE; ELECTRON; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ESCHERICHIA COLI; GENE MUTATION; MEMBRANE BINDING; NONHUMAN; POINT MUTATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEIN SECONDARY STRUCTURE; SEQUENCE ANALYSIS; SITE DIRECTED MUTAGENESIS;

AMINO ACID SEQUENCE; ARCHAEA; BINDING SITES; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; QUINONE REDUCTASES; SULFIDES;

CALDIVIRGA MAQUILINGENSIS;

EID: 84871958905     PISSN: 00052728     EISSN: 18792650     Source Type: Journal    
DOI: 10.1016/j.bbabio.2012.10.010     Document Type: Article

References (49)

1. G. Y a H Shahak Sulfide oxidation from cyanobacteria to humans: sulfide-quinone oxidoreductase (SQR) R. Hell, S. Dahl, D.B. Knaff, T. Leustek, Advances in Photosynthesis and Respiration 27 2008 Springer Heidelberg, Germany 319 335
2. C. Griesbeck Hauska, G. and Schütz, M., Biological Sulfide Oxidation: Sulfide-Quinone Reductase (SQR), the Primary Reaction S.G. Pandalai, Recent Research Developments in Microbiology vol. 4 2000 Research Signpost Trivandrum, India 179 203
3. A. Kletzin, T. Urich, F. Muller, T.M. Bandeiras, and C.M. Gomes Dissimilatory oxidation and reduction of elemental sulfur in thermophilic archaea J. Bioenerg. Biomembr. 36 2004 77 91
4. M. Guiral, L. Prunetti, S. Lignon, R.g. Lebrun, D. Moinier, and M.-T.r.s. Giudici-Orticoni New insights into the respiratory chains of the chemolithoautotrophic and hyperthermophilic bacterium Aquifex aeolicus J. Proteome Res. 8 2009 1717 1730
5. L.H. Gregersen, D.A. Bryant, and N.U. Frigaard Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria Front. Microbiol. 2 2011 116
6. S. Mimoun, M. Andriamihaja, C. Chaumontet, C. Atanasiu, R. Benamouzig, J.M. Blouin, D. Tome, F. Bouillaud, and F. Blachier Detoxification of h(2)s by differentiated colonic epithelial cells: implication of the sulfide oxidizing unit and of the cell respiratory capacity Antioxid. Redox Signal. 17 2012 1 10
7. F. Bouillaud, and F. Blachier Mitochondria and sulfide: a very old story of poisoning, feeding, and signaling? Antioxid. Redox Signal. 15 2011 379 391
8. K. Shatalin, E. Shatalina, A. Mironov, and E. Nudler H2S: a universal defense against antibiotics in bacteria Science 334 2011 986 990
9. R. Wang The gasotransmitter role of hydrogen sulfide Antioxid. Redox Signal. 5 2003 493 501
10. O. Kabil, and R. Banerjee Redox biochemistry of hydrogen sulfide J. Biol. Chem. 285 2010 21903 21907
11. H. Kimura Hydrogen sulfide as a neuromodulator Mol. Neurobiol. 26 2002 13 19
12. M. Guiral, P. Tron, C. Aubert, A. Gloter, C. Iobbi-Nivol, and M.T. Giudici-Orticoni A membrane-bound multienzyme, hydrogen-oxidizing, and sulfur-reducing complex from the hyperthermophilic bacterium Aquifex aeolicus J. Biol. Chem. 280 2005 42004 42015
13. M. Marcia, U. Ermler, G. Peng, and H. Michel A new structure-based classification of sulfide:quinone oxidoreductases Proteins Struct. Funct. Bioinforma. 78 2010 1073 1083
14. L.K. Chan, R.M. Morgan-Kiss, and T.E. Hanson Functional analysis of three sulfide:quinone oxidoreductase homologs in Chlorobaculum tepidum J. Bacteriol. 191 2009 1026 1034
15. C. Holkenbrink, S.O. Barbas, A. Mellerup, H. Otaki, and N.U. Frigaard Sulfur globule oxidation in green sulfur bacteria is dependent on the dissimilatory sulfite reductase system Microbiology 157 2011 1229 1239
16. U. Theissen, M. Hoffmeister, M. Grieshaber, and W. Martin Single eubacterial origin of eukaryotic sulfide:quinone oxidoreductase, a mitochondrial enzyme conserved from the early evolution of eukaryotes during anoxic and sulfidic times Mol. Biol. Evol. 20 2003 1564 1574
17. M. Marcia, J.D. Langer, D. Parcej, V. Vogel, G. Peng, and H. Michel Characterizing a monotopic membrane enzyme. Biochemical, enzymatic and crystallization studies on Aquifex aeolicus sulfide:quinone oxidoreductase Biochim. Biophys. Acta Biomembr. 1798 2010 2114 2123
18. M. Marcia, U. Ermler, G. Peng, and H. Michel The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration Proc. Natl. Acad. Sci. U. S. A. 106 2009 9625 9630
19. M.M. Cherney, Y. Zhang, M.N. James, and J.H. Weiner Structure-activity characterization of sulfide:quinone oxidoreductase variants J. Struct. Biol. 2012
20. M.M. Cherney, Y. Zhang, M. Solomonson, J.H. Weiner, and M.N. James Crystal structure of sulfide:quinone oxidoreductase from Acidithiobacillus ferrooxidans: insights into sulfidotrophic respiration and detoxification J. Mol. Biol. 398 2010 292 305
21. J.A. Brito, F.L. Sousa, M. Stelter, T.M. Bandeiras, C. Vonrhein, M. Teixeira, M.M. Pereira, and M. Archer Structural and Functional Insights into Sulfide:Quinone Oxidoreductase Biochemistry 48 2009 5613 5622
22. K. Balali-Mood, P.J. Bond, and M.S. Sansom Interaction of monotopic membrane enzymes with a lipid bilayer: a coarse-grained MD simulation study Biochemistry 48 2009 2135 2145
23. C. Griesbeck, M. Schutz, T. Schodl, S. Bathe, L. Nausch, N. Mederer, M. Vielreicher, and G. Hauska Mechanism of sulfide-quinone reductase investigated using site-directed mutagenesis and sulfur analysis Biochemistry 41 2002 11552 11565
24. T. Itoh, K. Suzuki, P.C. Sanchez, and T. Nakase Caldivirga maquilingensis gen. nov., sp. nov., a new genus of rod-shaped crenarchaeote isolated from a hot spring in the Philippines Int. J. Syst. Bacteriol. 49 Pt 3 1999 1157 1163
25. R.C. Edgar MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 32 2004 1792 1797
26. L.J. McGuffin, K. Bryson, and D.T. Jones The PSIPRED protein structure prediction server Bioinformatics 16 2000 404 405
27. W. Weyler, and J.I. Salach Purification and properties of mitochondrial monoamine oxidase type A from human placenta J. Biol. Chem. 260 1985 13199 13207
28. S. Susin, J. Abian, F. Sanchez-Baeza, M.L. Peleato, A. Abadia, E. Gelpi, and J. Abadia Riboflavin 3'- and 5'-sulfate, two novel flavins accumulating in the roots of iron-deficient sugar beet (Beta vulgaris) J. Biol. Chem. 268 1993 20958 20965
29. Y. Shahak, C. Klughammer, U. Schreiber, E. Padan, I. Herrman, and G. Hauska Sulfide-quinone and sulfide-cytochrome reduction in Rhodobacter capsulatus Photosynth. Res. 39 1994 175 181
30. R.A. Morton Quinones as a biological catalysts Endeavour 24 1965 81 86
31. M. Schutz, Y. Shahak, E. Padan, and G. Hauska Sulfide-quinone reductase from Rhodobacter capsulatus. Purification, cloning, and expression J Biol Chem 272 1997 9890 9894
32. S. Ghisla, and V. Massey New flavins for old: artificial flavins as active site probes of flavoproteins Biochem. J. 239 1986 1 12
33. J.G. Vande Weghe, and D.W. Ow A fission yeast gene for mitochondrial sulfide oxidation J. Biol. Chem. 274 1999 13250 13257
34. M.H. Hefti, J. Vervoort, and W.J. van Berkel Deflavination and reconstitution of flavoproteins Eur. J. Biochem. 270 2003 4227 4242
35. B. Kunze, G. Hofle, and H. Reichenbach The aurachins, new quinoline antibiotics from myxobacteria: production, physico-chemical and biological properties J Antibiot. (Tokyo) 40 1987 258 265
36. S. Romagnoli, W. Oettmeier, and D. Zannoni The effects of decyl aurachins C and D on the respiratory electron flow of facultative phototrophic bacteria Biochem. Mol. Biol. Int. 39 1996 671 678
37. G. Blobel Intracellular protein topogenesis Proc. Natl. Acad. Sci. U. S. A. 77 1980 1496 1500
38. R. Gautier, D. Douguet, B. Antonny, and G. Drin HELIQUEST: a web server to screen sequences with specific alpha-helical properties Bioinformatics 24 2008 2101 2102
39. S. Wakai, M. Tsujita, M. Kikumoto, M.A. Manchur, T. Kanao, and K. Kamimura Purification and characterization of sulfide:quinone oxidoreductase from an acidophilic iron-oxidizing bacterium, Acidithiobacillus ferrooxidans Biosci. Biotechnol. Biochem. 71 2007 2735 2742
40. K. Gupta, B.S. Selinsky, C.J. Kaub, A.K. Katz, and P.J. Loll The 2.0 A resolution crystal structure of prostaglandin H2 synthase-1: structural insights into an unusual peroxidase J. Mol. Biol. 335 2004 503 518
41. J.R. Kiefer, J.L. Pawlitz, K.T. Moreland, R.A. Stegeman, W.F. Hood, J.K. Gierse, A.M. Stevens, D.C. Goodwin, S.W. Rowlinson, L.J. Marnett, W.C. Stallings, and R.G. Kurumbail Structural insights into the stereochemistry of the cyclooxygenase reaction Nature 405 2000 97 101
42. N.J. Watmough, and F.E. Frerman The electron transfer flavoprotein: ubiquinone oxidoreductases Biochim. Biophys. Acta Bioenerg. 1797 2010 1910 1916
43. J. Zhang, F.E. Frerman, and J.J. Kim Structure of electron transfer flavoprotein-ubiquinone oxidoreductase and electron transfer to the mitochondrial ubiquinone pool Proc. Natl. Acad. Sci. U. S. A. 103 2006 16212 16217
44. J.I. Yeh, U. Chinte, and S. Du Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism Proc. Natl. Acad. Sci. U. S. A. 105 2008 3280 3285
45. R. Thoma, T. Schulz-Gasch, B. D'Arcy, J. Benz, J. Aebi, H. Dehmlow, M. Hennig, M. Stihle, and A. Ruf Insight into steroid scaffold formation from the structure of human oxidosqualene cyclase Nature 432 2004 118 122
46. M.H. Bracey, M.A. Hanson, K.R. Masuda, R.C. Stevens, and B.F. Cravatt Structural adaptations in a membrane enzyme that terminates endocannabinoid signaling Science 298 2002 1793 1796
47. D.P. Kloer, S. Ruch, S. Al-Babili, P. Beyer, and G.E. Schulz The structure of a retinal-forming carotenoid oxygenase Science 308 2005 267 269
48. E. Granseth, G. von Heijne, and A. Elofsson A study of the membrane-water interface region of membrane proteins J. Mol. Biol. 346 2005 377 385
49. S. Ghisla, and V. Massey Mechanisms of flavoprotein-catalyzed reactions Eur. J. Biochem. 181 1989 1 17