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Volumn 109, Issue 52, 2012, Pages 21307-21312

Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme

Author keywords

Choline trimethylamine lyase; Fragmentation; Gastrointestinal tract; Metabolism; Trimethylaminuria

Indexed keywords

CARBON; CHOLINE; ENZYME; NITROGEN; TRIMETHYLAMINE;

EID: 84871837954     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1215689109     Document Type: Article
Times cited : (559)

References (41)
  • 1
    • 74949113912 scopus 로고    scopus 로고
    • Choline: An essential nutrient for public health
    • Zeisel SH, da Costa KA (2009) Choline: An essential nutrient for public health. Nutr Rev 67(11):615-623.
    • (2009) Nutr Rev , vol.67 , Issue.11 , pp. 615-623
    • Zeisel, S.H.1    Da Costa, K.A.2
  • 2
  • 3
    • 0036330578 scopus 로고    scopus 로고
    • Trimethylamine oxide accumulation in marine animals: Relationship to acylglycerol storage
    • Seibel BA, Walsh PJ (2002) Trimethylamine oxide accumulation in marine animals: Relationship to acylglycerol storage. J Exp Biol 205(Pt 3):297-306. (Pubitemid 34853795)
    • (2002) Journal of Experimental Biology , vol.205 , Issue.3 , pp. 297-306
    • Seibel, B.A.1    Walsh, P.J.2
  • 5
    • 84871830892 scopus 로고
    • The formation of trimethylamine by Bacterium prodigiosum
    • Ackermann D, Schutze H (1910) The formation of trimethylamine by Bacterium prodigiosum. Zentralb Physiol 24:210-211.
    • (1910) Zentralb Physiol , vol.24 , pp. 210-211
    • Ackermann, D.1    Schutze, H.2
  • 6
    • 0001247440 scopus 로고
    • Anaerobic degradation of choline. I. Fermentation of choline by an anaerobic, cytochrome-producing bacterium, Vibrio cholinicus n. sp.
    • Hayward HR, Stadtman TC (1959) Anaerobic degradation of choline. I. Fermentation of choline by an anaerobic, cytochrome-producing bacterium, Vibrio cholinicus n. sp. J Bacteriol 78:557-561.
    • (1959) J Bacteriol , vol.78 , pp. 557-561
    • Hayward, H.R.1    Stadtman, T.C.2
  • 7
    • 0000824613 scopus 로고
    • Anaerobic degradation of choline. II. Preparation and properties of cell-free extracts of Vibrio cholinicus
    • Hayward HR, Stadtman TC (1960) Anaerobic degradation of choline. II. Preparation and properties of cell-free extracts of Vibrio cholinicus. J Biol Chem 235:538-543.
    • (1960) J Biol Chem , vol.235 , pp. 538-543
    • Hayward, H.R.1    Stadtman, T.C.2
  • 8
    • 0000824614 scopus 로고
    • Anaerobic degradation of choline. III. Acetaldehyde as an intermediate in the fermentation of choline by extracts of Vibrio cholinicus
    • Hayward HR, Stadtman TC (1960) Anaerobic degradation of choline. III. Acetaldehyde as an intermediate in the fermentation of choline by extracts of Vibrio cholinicus. J Biol Chem 235:3292-3596.
    • (1960) J Biol Chem , vol.235 , pp. 3292-3596
    • Hayward, H.R.1    Stadtman, T.C.2
  • 9
    • 19944387962 scopus 로고    scopus 로고
    • Trimethylamine: Metabolic, pharmacokinetic and safety aspects
    • DOI 10.2174/1389200054021807
    • Bain MA, Fornasini G, Evans AM (2005) Trimethylamine: Metabolic, pharmacokinetic and safety aspects. Curr Drug Metab 6(3):227-240. (Pubitemid 40753854)
    • (2005) Current Drug Metabolism , vol.6 , Issue.3 , pp. 227-240
    • Bain, M.A.1    Fornasini, G.2    Evans, A.M.3
  • 10
    • 84873763499 scopus 로고
    • Urinary excretion of choline metabolites following choline administration in normals and patients with hepatobiliary diseases
    • de la Huerga J, Popper H (1951) Urinary excretion of choline metabolites following choline administration in normals and patients with hepatobiliary diseases. J Clin Invest 30(5):463-470.
    • (1951) J Clin Invest , vol.30 , Issue.5 , pp. 463-470
    • De La Huerga, J.1    Popper, H.2
  • 12
    • 0017877032 scopus 로고
    • Conversion of choline methyl groups through trimethylamine into methane in the rumen
    • Neill AR, Grime DW, Dawson RMC (1978) Conversion of choline methyl groups through trimethylamine into methane in the rumen. Biochem J 170(3):529-535. (Pubitemid 8290547)
    • (1978) Biochemical Journal , vol.170 , Issue.3 , pp. 529-535
    • Neill, A.R.1    Grime, D.W.2    Dawson, R.M.C.3
  • 13
    • 0026530453 scopus 로고
    • The exogenous origin of trimethylamine in the mouse
    • al-Waiz M, Mikov M, Mitchell SC, Smith RL (1992) The exogenous origin of trimethylamine in the mouse. Metabolism 41(2):135-136.
    • (1992) Metabolism , vol.41 , Issue.2 , pp. 135-136
    • Al-Waiz, M.1    Mikov, M.2    Mitchell, S.C.3    Smith, R.L.4
  • 15
    • 19444375492 scopus 로고    scopus 로고
    • Mammalian flavin-containing monooxygenases: Structure/function, genetic polymorphisms and role in drug metabolism
    • DOI 10.1016/j.pharmthera.2005.01.001, PII S0163725805000185
    • Krueger SK, Williams DE (2005) Mammalian flavin-containing monooxygenases: Structure/function, genetic polymorphisms and role in drug metabolism. Pharmacol Ther 106(3):357-387. (Pubitemid 40726294)
    • (2005) Pharmacology and Therapeutics , vol.106 , Issue.3 , pp. 357-387
    • Krueger, S.K.1    Williams, D.E.2
  • 17
    • 33747618036 scopus 로고    scopus 로고
    • Metabolic profiling reveals a contribution of gut microbiota to fatty liver phenotype in insulin-resistant mice
    • Dumas ME, et al. (2006) Metabolic profiling reveals a contribution of gut microbiota to fatty liver phenotype in insulin-resistant mice. Proc Natl Acad Sci USA 103(33):12511-12516.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.33 , pp. 12511-12516
    • Dumas, M.E.1
  • 18
    • 79953733693 scopus 로고    scopus 로고
    • Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
    • Wang Z, et al. (2011) Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease. Nature 472(7341):57-63.
    • (2011) Nature , vol.472 , Issue.7341 , pp. 57-63
    • Wang, Z.1
  • 19
    • 0021171717 scopus 로고
    • Metabolism of trimethylamine, choline, and glycine betaine by sul-fate- Reducing and methanogenic bacteria in marine sediments
    • King GM (1984) Metabolism of trimethylamine, choline, and glycine betaine by sul-fate- reducing and methanogenic bacteria in marine sediments. Appl Environ Microbiol 48(4):719-725.
    • (1984) Appl Environ Microbiol , vol.48 , Issue.4 , pp. 719-725
    • King, G.M.1
  • 20
    • 0020680189 scopus 로고
    • Methanogenesis from choline by a coculture of Desulfovibrio sp. and Methanosarcina barkeri
    • Fiebig K, Gottschalk G (1983) Methanogenesis from choline by a coculture of Desulfovibrio sp. and Methanosarcina barkeri. Appl Environ Microbiol 45(1):161-168. (Pubitemid 13175291)
    • (1983) Applied and Environmental Microbiology , vol.45 , Issue.1 , pp. 161-168
    • Fiebig, K.1    Gottschalk, G.2
  • 21
    • 77949547790 scopus 로고    scopus 로고
    • Ethanolamine utilization in bacterial pathogens: Roles and regulation
    • Garsin DA (2010) Ethanolamine utilization in bacterial pathogens: Roles and regulation. Nat Rev Microbiol 8(4):290-295.
    • (2010) Nat Rev Microbiol , vol.8 , Issue.4 , pp. 290-295
    • Garsin, D.A.1
  • 22
    • 77956220623 scopus 로고    scopus 로고
    • Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates
    • Shibata N, et al. (2010) Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates. J Biol Chem 285(34):26484-26493.
    • (2010) J Biol Chem , vol.285 , Issue.34 , pp. 26484-26493
    • Shibata, N.1
  • 23
    • 0032851358 scopus 로고    scopus 로고
    • The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins
    • Kofoid E, Rappleye C, Stojiljkovic I, Roth J (1999) The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 181(17):5317-5329. (Pubitemid 29416352)
    • (1999) Journal of Bacteriology , vol.181 , Issue.17 , pp. 5317-5329
    • Kofoid, E.1    Rappleye, C.2    Stojiljkovic, I.3    Roth, J.4
  • 24
    • 0025284239 scopus 로고
    • Formation of trimethylamine from dietary choline by Streptococcus sanguis I, which colonizes the mouth
    • Chao CK, Zeisel SH (1990) Formation of trimethylamine from dietary choline by Streptococcus sanguis I, which colonizes the mouth. J Nutr Biochem 1(2):89-97.
    • (1990) J Nutr Biochem , vol.1 , Issue.2 , pp. 89-97
    • Chao, C.K.1    Zeisel, S.H.2
  • 25
    • 8444226694 scopus 로고    scopus 로고
    • The pyruvate formate lyase family: Sequences, structures and activation
    • DOI 10.1093/protein/gzh059
    • Lehtiö L, Goldman A (2004) The pyruvate formate lyase family: Sequences, structures and activation. Protein Eng Des Sel 17(6):545-552. (Pubitemid 39487534)
    • (2004) Protein Engineering, Design and Selection , vol.17 , Issue.6 , pp. 545-552
    • Lehtio, L.1    Goldman, A.2
  • 26
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52(5):696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 27
    • 0001762863 scopus 로고
    • Effect of phosphate on the corrosion of carbon steel and on the composition of corrosion products in two-stage continuous cultures of Desulfovibrio desulfuricans
    • Weimer PJ, Van Kavelaar MJ, Michel CB, Ng TK (1988) Effect of phosphate on the corrosion of carbon steel and on the composition of corrosion products in two-stage continuous cultures of Desulfovibrio desulfuricans. Appl Environ Microbiol 54(2):386-396.
    • (1988) Appl Environ Microbiol , vol.54 , Issue.2 , pp. 386-396
    • Weimer, P.J.1    Van Kavelaar, M.J.2    Michel, C.B.3    Ng, T.K.4
  • 28
    • 35148839870 scopus 로고    scopus 로고
    • Identification of genes that confer sediment fitness to Desulfovibrio desulfuricans G20
    • DOI 10.1128/AEM.00715-07
    • Luo Q, Groh JL, Ballard JD, Krumholz LR (2007) Identification of genes that confer sediment fitness to Desulfovibrio desulfuricans G20. Appl Environ Microbiol 73(19):6305-6312. (Pubitemid 47548044)
    • (2007) Applied and Environmental Microbiology , vol.73 , Issue.19 , pp. 6305-6312
    • Luo, Q.1    Groh, J.L.2    Ballard, J.D.3    Krumholz, L.R.4
  • 29
    • 79954499453 scopus 로고    scopus 로고
    • Structural insights into radical generation by the radical SAM superfamily
    • Vey JL, Drennan CL (2011) Structural insights into radical generation by the radical SAM superfamily. Chem Rev 111(4):2487-2506.
    • (2011) Chem Rev , vol.111 , Issue.4 , pp. 2487-2506
    • Vey, J.L.1    Drennan, C.L.2
  • 30
    • 0024460702 scopus 로고
    • The free radical of pyruvate formate-lyase. Characterization by EPR spectroscopy and involvement in catalysis as studied with the substrate-analogue hypophosphite
    • Unkrig V, Neugebauer FA, Knappe J (1989) The free radical of pyruvate formate-lyase. Characterization by EPR spectroscopy and involvement in catalysis as studied with the substrate-analogue hypophosphite. Eur J Biochem 184(3):723-728. (Pubitemid 19260700)
    • (1989) European Journal of Biochemistry , vol.184 , Issue.3 , pp. 723-728
    • Unkrig, V.1    Neugebauer, F.A.2    Knappe, J.3
  • 31
    • 0035110830 scopus 로고    scopus 로고
    • Anaerobic initial reaction of n-alkanes in a denitrifying bacterium: Evidence for (1-methylpentyl)succinate as initial product and for involvement of an organic radical in n-hexane metabolism
    • DOI 10.1128/JB.183.5.1707-1715.2001
    • Rabus R, et al. (2001) Anaerobic initial reaction of n-alkanes in a denitrifying bacterium: Evidence for (1-methylpentyl)succinate as initial product and for involvement of an organic radical in n-hexane metabolism. J Bacteriol 183(5):1707-1715. (Pubitemid 32172314)
    • (2001) Journal of Bacteriology , vol.183 , Issue.5 , pp. 1707-1715
    • Rabus, R.1    Wilkes, H.2    Behrends, A.3    Armstroff, A.4    Fischer, T.5    Pierik, A.J.6    Widdel, F.7
  • 32
    • 41149147247 scopus 로고    scopus 로고
    • Energy metabolism in Desulfovibrio vulgaris Hildenborough: Insights from transcriptome analysis
    • Pereira PM, et al. (2008) Energy metabolism in Desulfovibrio vulgaris Hildenborough: Insights from transcriptome analysis. Antonie van Leeuwenhoek 93(4):347-362.
    • (2008) Antonie Van Leeuwenhoek , vol.93 , Issue.4 , pp. 347-362
    • Pereira, P.M.1
  • 33
    • 0037560995 scopus 로고    scopus 로고
    • 12-dependent isomerization (eliminating) reactions
    • 12-dependent isomerization (eliminating) reactions. Chem Rev 103(6):2095-2127.
    • (2003) Chem Rev , vol.103 , Issue.6 , pp. 2095-2127
    • Toraya, T.1
  • 34
    • 27644532857 scopus 로고    scopus 로고
    • New glycyl radical enzymes catalysing key metabolic steps in anaerobic bacteria
    • DOI 10.1515/BC.2005.114
    • Selmer T, Pierik AJ, Heider J (2005) New glycyl radical enzymes catalysing key metabolic steps in anaerobic bacteria. Biol Chem 386(10):981-988. (Pubitemid 41548730)
    • (2005) Biological Chemistry , vol.386 , Issue.10 , pp. 981-988
    • Selmer, T.1    Pierik, A.J.2    Heider, J.3
  • 35
    • 84862661149 scopus 로고    scopus 로고
    • Glycerol dehydratation by the B12-independent enzyme may not involve the migration of a hydroxyl group: A computational study
    • Feliks M, Ullmann GM (2012) Glycerol dehydratation by the B12-independent enzyme may not involve the migration of a hydroxyl group: A computational study. J Phys Chem B 116(24):7076-7087.
    • (2012) J Phys Chem B , vol.116 , Issue.24 , pp. 7076-7087
    • Feliks, M.1    Ullmann, G.M.2
  • 36
    • 84856373733 scopus 로고    scopus 로고
    • Culture-independent methods for studying environmental microorganisms: Methods, application, and perspective
    • Su C, Lei L, Duan Y, Zhang K-Q, Yang J (2012) Culture-independent methods for studying environmental microorganisms: Methods, application, and perspective. Appl Microbiol Biotechnol 93(3):993-1003.
    • (2012) Appl Microbiol Biotechnol , vol.93 , Issue.3 , pp. 993-1003
    • Su, C.1    Lei, L.2    Duan, Y.3    Zhang, K.-Q.4    Yang, J.5
  • 37
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22(22):4673-4680. (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 23144452044 scopus 로고    scopus 로고
    • The HHpred interactive server for protein homology detection and structure prediction
    • Söding J, Biegert A, Lupas AN (2005) The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res 33(Web Server issue):W244-248.
    • (2005) Nucleic Acids Res , vol.33 , Issue.WEB SERVER ISSUE
    • Söding, J.1    Biegert, A.2    Lupas, A.N.3
  • 39
    • 1942502847 scopus 로고    scopus 로고
    • 12-independent glycerol dehydratase from Clostridium butyricum: Preliminary biochemical and structural characterization
    • 12-independent glycerol dehydratase from Clostridium butyricum: Preliminary biochemical and structural characterization. Biochemistry 43(16):4635-4645.
    • (2004) Biochemistry , vol.43 , Issue.16 , pp. 4635-4645
    • O'Brien, J.R.1
  • 40
    • 0029768716 scopus 로고    scopus 로고
    • Transposon mutagenesis in Desulfovibrio desulfuricans: Development of a random mutagenesis tool from Tn7
    • Wall JD, Murnan T, Argyle J, English RS, Rapp-Giles BJ (1996) Transposon mutagenesis in Desulfovibrio desulfuricans: Development of a random mutagenesis tool from Tn7. Appl Environ Microbiol 62(10):3762-3767. (Pubitemid 26329608)
    • (1996) Applied and Environmental Microbiology , vol.62 , Issue.10 , pp. 3762-3767
    • Wall, J.D.1    Murnan, T.2    Argyle, J.3    English, R.S.4    Rapp-Giles, B.J.5
  • 41
    • 0025736051 scopus 로고
    • DNA sequence and analysis of the bet genes encoding the osmoregulatory choline-glycine betaine pathway of Escherichia coli
    • Lamark T, et al. (1991) DNA sequence and analysis of the bet genes encoding the osmoregulatory choline-glycine betaine pathway of Escherichia coli. Mol Microbiol 5 (5):1049-1064. (Pubitemid 21896130)
    • (1991) Molecular Microbiology , vol.5 , Issue.5 , pp. 1049-1064
    • Lamark, T.1    Kaasen, I.2    Eshoo, M.W.3    Falkenberg, P.4    McDougall, J.5    Strom, A.R.6


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