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Volumn 73, Issue 19, 2007, Pages 6305-6312

Identification of genes that confer sediment fitness to Desulfovibrio desulfuricans G20

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOSYNTHESIS; DESULFURIZATION; DNA; MUTAGENESIS; PROTEINS; SEDIMENTS; SIGNAL TRANSDUCTION;

EID: 35148839870     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.00715-07     Document Type: Article
Times cited : (10)

References (39)
  • 1
    • 0035671419 scopus 로고    scopus 로고
    • RecA expression in response to solar UVR in the marine bacterium Vibrio natriegens
    • Booth, M. G., W. H. Jeffrey, and R. V. Miller. 2001. RecA expression in response to solar UVR in the marine bacterium Vibrio natriegens. Microb. Ecol. 42:531-539.
    • (2001) Microb. Ecol , vol.42 , pp. 531-539
    • Booth, M.G.1    Jeffrey, W.H.2    Miller, R.V.3
  • 2
    • 0033764695 scopus 로고    scopus 로고
    • Life at the oxic-anoxic interface: Microbial activities and adaptations
    • Brune, A., P. Frenzel, and H. Cypionka. 2000. Life at the oxic-anoxic interface: microbial activities and adaptations. FEMS Microbiol. Rev. 24:691-710.
    • (2000) FEMS Microbiol. Rev , vol.24 , pp. 691-710
    • Brune, A.1    Frenzel, P.2    Cypionka, H.3
  • 4
    • 9644291691 scopus 로고    scopus 로고
    • The mutagenic hazards of aquatic sediments: A review
    • Chen, G., and P. A. White. 2004. The mutagenic hazards of aquatic sediments: a review. Mutat. Res. 567:151-225.
    • (2004) Mutat. Res , vol.567 , pp. 151-225
    • Chen, G.1    White, P.A.2
  • 6
    • 33749411110 scopus 로고    scopus 로고
    • RuvABC is required to resolve Holliday junctions that accumulate following replication on damaged templates in Escherichia coli
    • Donaldson, J. R., C. T. Courcelle, and J. Courcelle. 2006. RuvABC is required to resolve Holliday junctions that accumulate following replication on damaged templates in Escherichia coli. J. Biol. Chem. 281:28811-28821.
    • (2006) J. Biol. Chem , vol.281 , pp. 28811-28821
    • Donaldson, J.R.1    Courcelle, C.T.2    Courcelle, J.3
  • 7
    • 0033915317 scopus 로고    scopus 로고
    • Response of a Pseudomonas aeruginosa biofilm community to DNA-damaging chemical agents
    • Elasri, M. O., T. Reid, S. Hutchens, and R. V. Miller. 2000. Response of a Pseudomonas aeruginosa biofilm community to DNA-damaging chemical agents. FEMS Microbiol. Ecol. 33:21-25.
    • (2000) FEMS Microbiol. Ecol , vol.33 , pp. 21-25
    • Elasri, M.O.1    Reid, T.2    Hutchens, S.3    Miller, R.V.4
  • 8
    • 14644416571 scopus 로고    scopus 로고
    • Construction of a [NiFe]-hydrogenase deletion mutant of Desulfovibrio vulgaris Hildenborough
    • Goenka, A., J. K. Voordouw, W. Lubitz, W. Gartner, and G. Voordouw. 2005. Construction of a [NiFe]-hydrogenase deletion mutant of Desulfovibrio vulgaris Hildenborough. Biochem. Soc. Trans. 33:59-60.
    • (2005) Biochem. Soc. Trans , vol.33 , pp. 59-60
    • Goenka, A.1    Voordouw, J.K.2    Lubitz, W.3    Gartner, W.4    Voordouw, G.5
  • 9
    • 32044474842 scopus 로고    scopus 로고
    • A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments
    • Groh, J. L., Q. Luo, J. D. Ballard, and L. R. Krumholz. 2005. A method adapting microarray technology for signature-tagged mutagenesis of Desulfovibrio desulfuricans G20 and Shewanella oneidensis MR-1 in anaerobic sediment survival experiments. Appl. Environ. Microbiol. 71:7064-7074.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 7064-7074
    • Groh, J.L.1    Luo, Q.2    Ballard, J.D.3    Krumholz, L.R.4
  • 10
    • 33846422394 scopus 로고    scopus 로고
    • Genes that enhance the ecological fitness of Shewanella oneidensis MR-1 in sediments reveal the value of antibiotic resistance
    • Groh, J. L., Q. Luo, J. D. Ballard, and L. R. Krumholz. 2007. Genes that enhance the ecological fitness of Shewanella oneidensis MR-1 in sediments reveal the value of antibiotic resistance. Appl. Environ. Microbiol. 73:492-498.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 492-498
    • Groh, J.L.1    Luo, Q.2    Ballard, J.D.3    Krumholz, L.R.4
  • 11
    • 1942532926 scopus 로고    scopus 로고
    • Identification of Campylobacter jejuni genes involved in commensal colonization of the chick gastrointestinal tract
    • Hendrixson, D. R., and V. J. DiRita. 2004. Identification of Campylobacter jejuni genes involved in commensal colonization of the chick gastrointestinal tract. Mol. Microbiol. 52:471-484.
    • (2004) Mol. Microbiol , vol.52 , pp. 471-484
    • Hendrixson, D.R.1    DiRita, V.J.2
  • 12
    • 0347447341 scopus 로고    scopus 로고
    • Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: Effects of virus infection, containment, and nutrient enrichment
    • Hewson, I., G. A. Vargo, and J. A. Fuhrman. 2003. Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: effects of virus infection, containment, and nutrient enrichment. Microb. Ecol. 46:322-336.
    • (2003) Microb. Ecol , vol.46 , pp. 322-336
    • Hewson, I.1    Vargo, G.A.2    Fuhrman, J.A.3
  • 14
    • 10444268971 scopus 로고    scopus 로고
    • In situ expression of nifD in Geobacteraceae in subsurface sediments
    • Holmes, D. E., K. P. Nevin, and D. R. Lovley. 2004. In situ expression of nifD in Geobacteraceae in subsurface sediments. Appl. Environ. Microbiol. 70:7251-7259.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 7251-7259
    • Holmes, D.E.1    Nevin, K.P.2    Lovley, D.R.3
  • 15
    • 0037246907 scopus 로고    scopus 로고
    • Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments
    • Krumholz, L. R., D. A. Elias, and J. M. Suflita. 2003. Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments. Geomicrobiol. J. 20:61-72.
    • (2003) Geomicrobiol. J , vol.20 , pp. 61-72
    • Krumholz, L.R.1    Elias, D.A.2    Suflita, J.M.3
  • 16
    • 0032587085 scopus 로고    scopus 로고
    • 2-utilizing bacteria, Desulfomicrobium hypogeium sp. nov. and Acetobacterium psammolithicum sp. nov., and their ecological roles
    • 2-utilizing bacteria, Desulfomicrobium hypogeium sp. nov. and Acetobacterium psammolithicum sp. nov., and their ecological roles. Appl. Environ. Microbiol. 65:2300-2306.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 2300-2306
    • Krumholz, L.R.1    Harris, S.H.2    Tay, S.T.3    Suflita, J.M.4
  • 17
    • 0036134559 scopus 로고    scopus 로고
    • Polymerase chain reaction-based signature-tagged mutagenesis
    • Lehoux, D. E., and R. C. Levesque. 2002. Polymerase chain reaction-based signature-tagged mutagenesis. Methods Mol. Biol. 182:127-137.
    • (2002) Methods Mol. Biol , vol.182 , pp. 127-137
    • Lehoux, D.E.1    Levesque, R.C.2
  • 18
    • 0024258796 scopus 로고
    • Hydrogen concentrations as an indicator of the predominant terminal electron-accepting reactions in aquatic sediments
    • Lovley, D. R., and S. Goodwin. 1988. Hydrogen concentrations as an indicator of the predominant terminal electron-accepting reactions in aquatic sediments. Geochim. Cosmochim. Acta 52:2993-3003.
    • (1988) Geochim. Cosmochim. Acta , vol.52 , pp. 2993-3003
    • Lovley, D.R.1    Goodwin, S.2
  • 20
    • 0031017847 scopus 로고    scopus 로고
    • Re-investigation of glucose metabolism in Fibrobacter succinogenes, using NMR spectroscopy and enzymatic assays. Evidence for pentose phosphates phosphoketolase and pyruvate formate lyase activities
    • Matheron, C., A. M. Delort, G. Gaudet, and E. Forano. 1997. Re-investigation of glucose metabolism in Fibrobacter succinogenes, using NMR spectroscopy and enzymatic assays. Evidence for pentose phosphates phosphoketolase and pyruvate formate lyase activities. Biochim. Biophys. Acta 1355:50-60.
    • (1997) Biochim. Biophys. Acta , vol.1355 , pp. 50-60
    • Matheron, C.1    Delort, A.M.2    Gaudet, G.3    Forano, E.4
  • 21
    • 0036162630 scopus 로고    scopus 로고
    • Use of signature-tagged mutagenesis in pathogenesis studies
    • Mecsas, J. 2002. Use of signature-tagged mutagenesis in pathogenesis studies. Curr. Opin. Microbiol. 5:33-37.
    • (2002) Curr. Opin. Microbiol , vol.5 , pp. 33-37
    • Mecsas, J.1
  • 22
    • 0036272450 scopus 로고    scopus 로고
    • Identification of novel factors involved in colonization and acid tolerance of Vibrio cholerae
    • Merrell, D. S., D. L. Hava, and A. Camilli. 2002. Identification of novel factors involved in colonization and acid tolerance of Vibrio cholerae. Mol. Microbiol. 43:1471-1491.
    • (2002) Mol. Microbiol , vol.43 , pp. 1471-1491
    • Merrell, D.S.1    Hava, D.L.2    Camilli, A.3
  • 23
    • 9244230099 scopus 로고    scopus 로고
    • Stationary-phase physiology
    • Nystrom, T. 2004. Stationary-phase physiology. Annu. Rev. Microbiol. 58:161-181.
    • (2004) Annu. Rev. Microbiol , vol.58 , pp. 161-181
    • Nystrom, T.1
  • 24
    • 0036174874 scopus 로고    scopus 로고
    • Effects of deletion of genes encoding Fe-only hydrogenase of Desulfovibrio vulgaris Hildenborough on hydrogen and lactate metabolism
    • Pohorelic, B. K. J., J. K. Voordouw, E. Lojou, A. Dolla, J. Harder, and G. Voordouw. 2002. Effects of deletion of genes encoding Fe-only hydrogenase of Desulfovibrio vulgaris Hildenborough on hydrogen and lactate metabolism. J. Bacteriol. 184:679-686.
    • (2002) J. Bacteriol , vol.184 , pp. 679-686
    • Pohorelic, B.K.J.1    Voordouw, J.K.2    Lojou, E.3    Dolla, A.4    Harder, J.5    Voordouw, G.6
  • 25
    • 0348196787 scopus 로고    scopus 로고
    • In vivo functional genomics of Pseudomonas aeruginosa for high-throughput screening of new virulence factors and antibacterial targets
    • Potvin, E., D. E. Lehoux, I. Kukavica-Ibrulj, K. L. Richard, F. Sanschagrin, G. W. Lau, and R. C. Levesque. 2003. In vivo functional genomics of Pseudomonas aeruginosa for high-throughput screening of new virulence factors and antibacterial targets. Environ. Microbiol. 5:1294-1308.
    • (2003) Environ. Microbiol , vol.5 , pp. 1294-1308
    • Potvin, E.1    Lehoux, D.E.2    Kukavica-Ibrulj, I.3    Richard, K.L.4    Sanschagrin, F.5    Lau, G.W.6    Levesque, R.C.7
  • 26
    • 0036422275 scopus 로고    scopus 로고
    • The distribution and activity of sulphate reducing bacteria in estuarine and coastal marine sediments
    • Purdy, K. J., T. M. Embley, and D. B. Nedwell. 2002. The distribution and activity of sulphate reducing bacteria in estuarine and coastal marine sediments. Antonie Leeuwenhoek 81:181-187.
    • (2002) Antonie Leeuwenhoek , vol.81 , pp. 181-187
    • Purdy, K.J.1    Embley, T.M.2    Nedwell, D.B.3
  • 27
    • 0027480407 scopus 로고
    • Primary structure, partial purification and regulation of key enzymes of the acetyl cycle of arginine biosynthesis in Bacillus stearothermophilus: Dual function of ornithine acetyltransferase
    • Sakanyan, V., D. Charlier, C. Legrain, A. Kochikyan, I. Mett, A. Pierard, and N. Glansdorff. 1993. Primary structure, partial purification and regulation of key enzymes of the acetyl cycle of arginine biosynthesis in Bacillus stearothermophilus: dual function of ornithine acetyltransferase. J. Gen. Microbiol. 139:393-402.
    • (1993) J. Gen. Microbiol , vol.139 , pp. 393-402
    • Sakanyan, V.1    Charlier, D.2    Legrain, C.3    Kochikyan, A.4    Mett, I.5    Pierard, A.6    Glansdorff, N.7
  • 28
    • 0024076249 scopus 로고
    • Structure and regulation of the Escherichia coli ruv operon involved in DNA repair and recombination
    • Shinagawa, H., K. Makino, M. Amemura, S. Kimura, H. Iwasaki, and A. Nakata. 1988. Structure and regulation of the Escherichia coli ruv operon involved in DNA repair and recombination. J. Bacteriol. 170:4322-4329.
    • (1988) J. Bacteriol , vol.170 , pp. 4322-4329
    • Shinagawa, H.1    Makino, K.2    Amemura, M.3    Kimura, S.4    Iwasaki, H.5    Nakata, A.6
  • 29
    • 33748289457 scopus 로고    scopus 로고
    • Biological treatment of heavy metals in acid mine drainage using sulfate reducing bioreactors
    • Sierra-Alvarez, R., S. Karri, S. Freeman, and J. A. Field. 2006. Biological treatment of heavy metals in acid mine drainage using sulfate reducing bioreactors. Water Sci. Technol 54:179-185.
    • (2006) Water Sci. Technol , vol.54 , pp. 179-185
    • Sierra-Alvarez, R.1    Karri, S.2    Freeman, S.3    Field, J.A.4
  • 30
    • 0031895275 scopus 로고    scopus 로고
    • Mutagenesis and more: UmuDC and the Escherichia coli SOS response
    • Smith, B. T., and G. C. Walker. 1998. Mutagenesis and more: umuDC and the Escherichia coli SOS response. Genetics 148:1599-1610.
    • (1998) Genetics , vol.148 , pp. 1599-1610
    • Smith, B.T.1    Walker, G.C.2
  • 31
    • 0037479784 scopus 로고    scopus 로고
    • Anaerobic transformation of alkanes to fatty acids by a sulfate-reducing bacterium, strain Hxd3
    • So, C. M., C. D. Phelps, and L. Y. Young. 2003. Anaerobic transformation of alkanes to fatty acids by a sulfate-reducing bacterium, strain Hxd3. Appl. Environ. Microbiol. 69:3892-3900.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 3892-3900
    • So, C.M.1    Phelps, C.D.2    Young, L.Y.3
  • 32
    • 0037377855 scopus 로고    scopus 로고
    • Roles of YqjH and YqjW, homologs of the Escherichia coli UmuC/DinB or Y superfamily of DNA polymerases, in stationary-phase mutagenesis and UV-induced mutagenesis of Bacillus subtilis
    • Sung, H.-M., G. Yeamans, C. A. Ross, and R. E. Yasbin. 2003. Roles of YqjH and YqjW, homologs of the Escherichia coli UmuC/DinB or Y superfamily of DNA polymerases, in stationary-phase mutagenesis and UV-induced mutagenesis of Bacillus subtilis. J. Bacteriol. 185:2153-2160.
    • (2003) J. Bacteriol , vol.185 , pp. 2153-2160
    • Sung, H.-M.1    Yeamans, G.2    Ross, C.A.3    Yasbin, R.E.4
  • 33
    • 0034513411 scopus 로고    scopus 로고
    • The SOS response: Recent insights into umuDC-dependent mutagenesis and DNA damage tolerance
    • Sutton, M. D., B. T. Smith, V. G. Godoy, and G. C. Walker. 2000. The SOS response: recent insights into umuDC-dependent mutagenesis and DNA damage tolerance. Annu. Rev. Genet. 34:479-497.
    • (2000) Annu. Rev. Genet , vol.34 , pp. 479-497
    • Sutton, M.D.1    Smith, B.T.2    Godoy, V.G.3    Walker, G.C.4
  • 34
    • 0001846728 scopus 로고    scopus 로고
    • Cultivation of bacteria and fungi
    • C. J. Hurst, G. R. Knudsen, M. J. McInerney, L. D. Stetzenbach, and M. V. Walter ed, ASM Press, Washington, DC
    • Tanner, R. S. 1997. Cultivation of bacteria and fungi, p. 52-60. In C. J. Hurst, G. R. Knudsen, M. J. McInerney, L. D. Stetzenbach, and M. V. Walter (ed.), Manual of environmental microbiology. ASM Press, Washington, DC.
    • (1997) Manual of environmental microbiology , pp. 52-60
    • Tanner, R.S.1
  • 35
    • 0025886295 scopus 로고
    • Reduction of the amount of periplasmic hydrogenase in Desulfovibrio vulgaris (Hildenborough) with antisense RNA: Direct evidence for an important role of this hydrogenase in lactate metabolism
    • van den Berg, W. A. M., W. M. A. M. van Dongen, and C. Veeger. 1991. Reduction of the amount of periplasmic hydrogenase in Desulfovibrio vulgaris (Hildenborough) with antisense RNA: direct evidence for an important role of this hydrogenase in lactate metabolism. J. Bacteriol. 173:3688-3694.
    • (1991) J. Bacteriol , vol.173 , pp. 3688-3694
    • van den Berg, W.A.M.1    van Dongen, W.M.A.M.2    Veeger, C.3
  • 36
    • 0025681925 scopus 로고
    • Distribution of hydrogenase genes in Desulfovibrio spp. and their use in identification of species from the oil field environment
    • Voordouw, G., V. Niviere, F. G. Ferris, P. M. Fedorak, and D. W. S. Westlake. 1990. Distribution of hydrogenase genes in Desulfovibrio spp. and their use in identification of species from the oil field environment. Appl. Environ. Microbiol. 56:3748-3754.
    • (1990) Appl. Environ. Microbiol , vol.56 , pp. 3748-3754
    • Voordouw, G.1    Niviere, V.2    Ferris, F.G.3    Fedorak, P.M.4    Westlake, D.W.S.5
  • 38
    • 14944386073 scopus 로고    scopus 로고
    • DNA-repair potential of Halomonas spp. from the Salt Plains Microbial Observatory of Oklahoma
    • Wilson, C., T. M. Caton, J. A. Buchheim, M. A. Buchheim, M. A. Schneegurt, and R. V. Miller. 2004. DNA-repair potential of Halomonas spp. from the Salt Plains Microbial Observatory of Oklahoma. Microb. Ecol. 48:541-549.
    • (2004) Microb. Ecol , vol.48 , pp. 541-549
    • Wilson, C.1    Caton, T.M.2    Buchheim, J.A.3    Buchheim, M.A.4    Schneegurt, M.A.5    Miller, R.V.6
  • 39
    • 0032513052 scopus 로고    scopus 로고
    • Chorismate mutase-prephenate dehydratase from Escherichia coli. Study of catalytic and regulatory domains using genetically engineered proteins
    • Zhang, S., G. Pohnert, P. Kongsaeree, D. B. Wilson, J. Clardy, and B. Ganem. 1998. Chorismate mutase-prephenate dehydratase from Escherichia coli. Study of catalytic and regulatory domains using genetically engineered proteins. J. Biol. Chem. 273:6248-6253.
    • (1998) J. Biol. Chem , vol.273 , pp. 6248-6253
    • Zhang, S.1    Pohnert, G.2    Kongsaeree, P.3    Wilson, D.B.4    Clardy, J.5    Ganem, B.6


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