메뉴 건너뛰기




Volumn 1834, Issue 1, 2013, Pages 380-386

A novel domain arrangement in a monomeric cyclodextrin-hydrolyzing enzyme from the hyperthermophile Pyrococcus furiosus

Author keywords

GH13 family; Hyperthermophilic enzyme; Maltoheptaose production; Monomer; Substrate specificity

Indexed keywords

ACARBOSE; AMYLASE; CYCLODEXTRIN; GLUTAMIC ACID; GLYCINE; PULLULAN; PYROCOCCUS FURIOSUS THERMOSTABLE AMYLASE; UNCLASSIFIED DRUG;

EID: 84871714045     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2012.08.001     Document Type: Article
Times cited : (32)

References (35)
  • 1
    • 27844584367 scopus 로고    scopus 로고
    • Industrial relevance of thermophilic archaea
    • K. Egorova, and G. Antranikian Industrial relevance of thermophilic archaea Curr. Opin. Microbiol. 8 2005 649 655
    • (2005) Curr. Opin. Microbiol. , vol.8 , pp. 649-655
    • Egorova, K.1    Antranikian, G.2
  • 2
    • 0035098779 scopus 로고    scopus 로고
    • Hyperthermophilic enzymes: Sources, uses, and molecular mechanisms for thermostability
    • C. Vieille, and G.J. Zeikus Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability Microbiol. Mol. Biol. Rev. 65 2001 1 43
    • (2001) Microbiol. Mol. Biol. Rev. , vol.65 , pp. 1-43
    • Vieille, C.1    Zeikus, G.J.2
  • 4
    • 3242754487 scopus 로고    scopus 로고
    • Properties of a novel thermostable glucoamylase from the hyperthermophilic archaeon Sulfolobus solfataricus in relation to starch processing
    • M.S. Kim, J.T. Park, Y.W. Kim, H.S. Lee, R. Nyawira, H.S. Shin, C.S. Park, S.H. Yoo, Y.R. Kim, and T.W. Moon Properties of a novel thermostable glucoamylase from the hyperthermophilic archaeon Sulfolobus solfataricus in relation to starch processing Appl. Environ. Microbiol. 70 2004 3933 3940
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3933-3940
    • Kim, M.S.1    Park, J.T.2    Kim, Y.W.3    Lee, H.S.4    Nyawira, R.5    Shin, H.S.6    Park, C.S.7    Yoo, S.H.8    Kim, Y.R.9    Moon, T.W.10
  • 5
    • 33745602670 scopus 로고    scopus 로고
    • Characterization and application of a novel thermostable glucoamylase cloned from a hyperthermophilic archaeon Sulfolobus tokodaii
    • R.N. Njoroge, D. Li, J.T. Park, H.J. Cha, M.S. Kim, J.W. Kim, and K.H. Park Characterization and application of a novel thermostable glucoamylase cloned from a hyperthermophilic archaeon Sulfolobus tokodaii Food Sci. Biotechnol. 14 2005 860 865
    • (2005) Food Sci. Biotechnol. , vol.14 , pp. 860-865
    • Njoroge, R.N.1    Li, D.2    Park, J.T.3    Cha, H.J.4    Kim, M.S.5    Kim, J.W.6    Park, K.H.7
  • 6
    • 0022445886 scopus 로고
    • Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100 C
    • G. Fiala, and K.O. Stetter Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100 C Arch. Microbiol. 145 1986 56 61
    • (1986) Arch. Microbiol. , vol.145 , pp. 56-61
    • Fiala, G.1    Stetter, K.O.2
  • 7
    • 8144230220 scopus 로고    scopus 로고
    • Enzymatic analysis of an amylolytic enzyme from the hyperthermophilic archaeon Pyrococcus furiosus reveals its novel catalytic properties as both an α-amylase and a cyclodextrin-hydrolyzing enzyme
    • S.J. Yang, H.S. Lee, C.S. Park, Y.R. Kim, T.W. Moon, and K.H. Park Enzymatic analysis of an amylolytic enzyme from the hyperthermophilic archaeon Pyrococcus furiosus reveals its novel catalytic properties as both an α-amylase and a cyclodextrin-hydrolyzing enzyme Appl. Environ. Microbiol. 70 2004 5988 5995
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5988-5995
    • Yang, S.J.1    Lee, H.S.2    Park, C.S.3    Kim, Y.R.4    Moon, T.W.5    Park, K.H.6
  • 9
    • 30744439834 scopus 로고    scopus 로고
    • Enzymatic preparation of maltohexaose, maltoheptaose, and maltooctaose by the preferential cyclomaltooligosaccharide (cyclodextrin) ring-opening reaction of Pyrococcus furiosus thermostable amylase
    • S.J. Yang, H.S. Lee, J.W. Kim, M.H. Lee, J.H. Auh, B.H. Lee, and K.H. Park Enzymatic preparation of maltohexaose, maltoheptaose, and maltooctaose by the preferential cyclomaltooligosaccharide (cyclodextrin) ring-opening reaction of Pyrococcus furiosus thermostable amylase Carbohydr. Res. 341 2006 420 424
    • (2006) Carbohydr. Res. , vol.341 , pp. 420-424
    • Yang, S.J.1    Lee, H.S.2    Kim, J.W.3    Lee, M.H.4    Auh, J.H.5    Lee, B.H.6    Park, K.H.7
  • 10
    • 34548495553 scopus 로고    scopus 로고
    • Changes in the catalytic properties of Pyrococcus furiosus thermostable amylase by mutagenesis of the substrate binding sites
    • S.J. Yang, B.C. Min, Y.W. Kim, S.M. Jang, B.H. Lee, and K.H. Park Changes in the catalytic properties of Pyrococcus furiosus thermostable amylase by mutagenesis of the substrate binding sites Appl. Environ. Microbiol. 73 2007 5607 5612
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5607-5612
    • Yang, S.J.1    Min, B.C.2    Kim, Y.W.3    Jang, S.M.4    Lee, B.H.5    Park, K.H.6
  • 11
    • 0037077228 scopus 로고    scopus 로고
    • Cyclomaltodextrinase, neopullulanase, and maltogenic amylase are nearly indistinguishable from each other
    • H.S. Lee, M.S. Kim, H.S. Cho, J.I. Kim, T.J. Kim, J.H. Choi, C. Park, B.H. Oh, and K.H. Park Cyclomaltodextrinase, neopullulanase, and maltogenic amylase are nearly indistinguishable from each other J. Biol. Chem. 277 2002 21891 21897
    • (2002) J. Biol. Chem. , vol.277 , pp. 21891-21897
    • Lee, H.S.1    Kim, M.S.2    Cho, H.S.3    Kim, J.I.4    Kim, T.J.5    Choi, J.H.6    Park, C.7    Oh, B.H.8    Park, K.H.9
  • 12
    • 0034705064 scopus 로고    scopus 로고
    • Structure, specificity and function of cyclomaltodextrinase, a multispecific enzyme of the α-amylase family
    • K.H. Park, T.J. Kim, T.K. Cheong, J.W. Kim, B.H. Oh, and B. Svensson Structure, specificity and function of cyclomaltodextrinase, a multispecific enzyme of the α-amylase family Biochim. Biophys. Acta 1478 2000 165 185
    • (2000) Biochim. Biophys. Acta , vol.1478 , pp. 165-185
    • Park, K.H.1    Kim, T.J.2    Cheong, T.K.3    Kim, J.W.4    Oh, B.H.5    Svensson, B.6
  • 14
    • 0037423706 scopus 로고    scopus 로고
    • Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase
    • H. Hondoh, T. Kuriki, and Y. Matsuura Three-dimensional structure and substrate binding of Bacillus stearothermophilus neopullulanase J. Mol. Biol. 326 2003 177 188
    • (2003) J. Mol. Biol. , vol.326 , pp. 177-188
    • Hondoh, H.1    Kuriki, T.2    Matsuura, Y.3
  • 15
    • 3843112354 scopus 로고    scopus 로고
    • Complex structures of Thermoactinomyces vulgaris R-47 α-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism
    • A. Ohtaki, M. Mizuno, T. Tonozuka, Y. Sakano, and S. Kamitori Complex structures of Thermoactinomyces vulgaris R-47 α-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism J. Biol. Chem. 279 2004 31033 31040
    • (2004) J. Biol. Chem. , vol.279 , pp. 31033-31040
    • Ohtaki, A.1    Mizuno, M.2    Tonozuka, T.3    Sakano, Y.4    Kamitori, S.5
  • 16
    • 77955092809 scopus 로고    scopus 로고
    • Overexpression and characterization of an extremely thermostable maltogenic amylase, with an optimal temperature of 100 C, from the hyperthermophilic archaeon Staphylothermus marinus
    • D. Li, J.T. Park, X. Li, S. Kim, S. Lee, J.H. Shim, S.H. Park, J. Cha, B.H. Lee, and J.W. Kim Overexpression and characterization of an extremely thermostable maltogenic amylase, with an optimal temperature of 100 C, from the hyperthermophilic archaeon Staphylothermus marinus New Biotechnol. 27 2010 300 307
    • (2010) New Biotechnol. , vol.27 , pp. 300-307
    • Li, D.1    Park, J.T.2    Li, X.3    Kim, S.4    Lee, S.5    Shim, J.H.6    Park, S.H.7    Cha, J.8    Lee, B.H.9    Kim, J.W.10
  • 17
    • 76849113944 scopus 로고    scopus 로고
    • Characterization of a recombinant amylolytic enzyme of hyperthermophilic archaeon Thermofilum pendens with extremely thermostable maltogenic amylase activity
    • X. Li, D. Li, Y. Yin, and K.H. Park Characterization of a recombinant amylolytic enzyme of hyperthermophilic archaeon Thermofilum pendens with extremely thermostable maltogenic amylase activity Appl. Microbiol. Biotechnol. 85 2010 1821 1830
    • (2010) Appl. Microbiol. Biotechnol. , vol.85 , pp. 1821-1830
    • Li, X.1    Li, D.2    Yin, Y.3    Park, K.H.4
  • 18
    • 34247614099 scopus 로고    scopus 로고
    • Molecular cloning and biochemical characterization of the first archaeal maltogenic amylase from the hyperthermophilic archaeon Thermoplasma volcanium GSS1
    • J.W. Kim, Y.H. Kim, H.S. Lee, S.J. Yang, Y.W. Kim, M.H. Lee, N.S. Seo, C.S. Park, and K.H. Park Molecular cloning and biochemical characterization of the first archaeal maltogenic amylase from the hyperthermophilic archaeon Thermoplasma volcanium GSS1 Biochim. Biophys. Acta 1774 2007 661 669
    • (2007) Biochim. Biophys. Acta , vol.1774 , pp. 661-669
    • Kim, J.W.1    Kim, Y.H.2    Lee, H.S.3    Yang, S.J.4    Kim, Y.W.5    Lee, M.H.6    Seo, N.S.7    Park, C.S.8    Park, K.H.9
  • 19
    • 84863239712 scopus 로고    scopus 로고
    • Association of a novel domain in the active site of archaic hyperthermophile maltogenic amylase from Staphylothermus marinus
    • T.Y. Jung, D. Li, J.T. Park, S.M. Yoon, P.L. Tran, B.H. Oh, Š. Janeček, S.G. Park, E.J. Woo, and K.H. Park Association of a novel domain in the active site of archaic hyperthermophile maltogenic amylase from Staphylothermus marinus J. Biol. Chem. 287 2012 7979 7989
    • (2012) J. Biol. Chem. , vol.287 , pp. 7979-7989
    • Jung, T.Y.1    Li, D.2    Park, J.T.3    Yoon, S.M.4    Tran, P.L.5    Oh, B.H.6    Janeček, Š.7    Park, S.G.8    Woo, E.J.9    Park, K.H.10
  • 20
    • 33747333106 scopus 로고
    • Use of dinitrosalicylic acid reagent for determination of reducing sugar
    • G.L. Miller Use of dinitrosalicylic acid reagent for determination of reducing sugar Anal. Chem. 31 1959 426 428
    • (1959) Anal. Chem. , vol.31 , pp. 426-428
    • Miller, G.L.1
  • 21
    • 0025766291 scopus 로고
    • Miniaturization of three carbohydrate analyses using a microsample plate reader
    • J.D. Fox, and J.F. Robyt Miniaturization of three carbohydrate analyses using a microsample plate reader Anal. Biochem. 195 1991 93 96
    • (1991) Anal. Biochem. , vol.195 , pp. 93-96
    • Fox, J.D.1    Robyt, J.F.2
  • 23
    • 60749095002 scopus 로고    scopus 로고
    • Multiple sequence alignment using ClustalW and ClustalX
    • (in press)
    • J.D. Thompson, T. Gibson, Multiple sequence alignment using ClustalW and ClustalX, Curr. Protoc. Bioinformatics (in press), http://dx.doi.org/10.1002/ 0471250953.bi0203s00.
    • Curr. Protoc. Bioinformatics
    • Thompson, J.D.1    Gibson, T.2
  • 25
    • 23444445889 scopus 로고    scopus 로고
    • Mutagenesis of Ala290, which modulates substrate subsite affinity at the catalytic interface of dimeric ThMA
    • S.H. Park, H. Cha, H.K. Kang, J.H. Shim, E.J. Woo, J.W. Kim, and K.H. Park Mutagenesis of Ala290, which modulates substrate subsite affinity at the catalytic interface of dimeric ThMA Biochim. Biophys. Acta 1751 2005 170 177
    • (2005) Biochim. Biophys. Acta , vol.1751 , pp. 170-177
    • Park, S.H.1    Cha, H.2    Kang, H.K.3    Shim, J.H.4    Woo, E.J.5    Kim, J.W.6    Park, K.H.7
  • 27
    • 77955096719 scopus 로고    scopus 로고
    • Thermoacidophiles and their protein adaptation to low pH and high temperature
    • K.S. Siddiqui, T. Thomas, Nova Science Publishers New York
    • G. Anitranikian Thermoacidophiles and their protein adaptation to low pH and high temperature K.S. Siddiqui, T. Thomas, Protein Adaptation in Extremophiles 2008 Nova Science Publishers New York 143 166
    • (2008) Protein Adaptation in Extremophiles , pp. 143-166
    • Anitranikian, G.1
  • 28
    • 77956583988 scopus 로고    scopus 로고
    • Enzyme stability and activity at high temperatures
    • K.S. Siddiqui, T. Thomas, Nova Science Publisher New York
    • R.M. Paniel Enzyme stability and activity at high temperatures K.S. Siddiqui, T. Thomas, Protein Adaptation in Extremophiles 2008 Nova Science Publisher New York 1 34
    • (2008) Protein Adaptation in Extremophiles , pp. 1-34
    • Paniel, R.M.1
  • 29
    • 60549104020 scopus 로고    scopus 로고
    • Stability and solubility of proteins from extremophiles
    • R.B. Greaves, and J. Warwicker Stability and solubility of proteins from extremophiles Biochem. Biophys. Res. Commun. 380 2009 581 585
    • (2009) Biochem. Biophys. Res. Commun. , vol.380 , pp. 581-585
    • Greaves, R.B.1    Warwicker, J.2
  • 30
    • 0035960637 scopus 로고    scopus 로고
    • Modulation of the multisubstrate specificity of Thermus maltogenic amylase by truncation of the N-terminal domain and by a salt-induced shift of the monomer/dimer equilibrium
    • T.J. Kim, H.S. Lee, M.J. Kim, H.Y. Cho, Y.W. Kim, T.W. Moon, C.S. Park, J.W. Kim, B.H. Oh, and S.B. Lee Modulation of the multisubstrate specificity of Thermus maltogenic amylase by truncation of the N-terminal domain and by a salt-induced shift of the monomer/dimer equilibrium Biochemistry 40 2001 14182 14190
    • (2001) Biochemistry , vol.40 , pp. 14182-14190
    • Kim, T.J.1    Lee, H.S.2    Kim, M.J.3    Cho, H.Y.4    Kim, Y.W.5    Moon, T.W.6    Park, C.S.7    Kim, J.W.8    Oh, B.H.9    Lee, S.B.10
  • 31
    • 33645752829 scopus 로고    scopus 로고
    • Modification of rice starch by selective degradation of amylose using alkalophilic Bacillus cyclomaltodextrinase
    • J.H. Auh, H.Y. Chae, Y.R. Kim, K.H. Shim, S.H. Yoo, and K.H. Park Modification of rice starch by selective degradation of amylose using alkalophilic Bacillus cyclomaltodextrinase J. Agric. Food Chem. 54 2006 2314 2319
    • (2006) J. Agric. Food Chem. , vol.54 , pp. 2314-2319
    • Auh, J.H.1    Chae, H.Y.2    Kim, Y.R.3    Shim, K.H.4    Yoo, S.H.5    Park, K.H.6
  • 32
    • 0041743799 scopus 로고    scopus 로고
    • Development of functional oligosaccharides in Japan
    • T. Nakakuki Development of functional oligosaccharides in Japan Trends Glycosci. Glycotechnol. 15 2003 57 64
    • (2003) Trends Glycosci. Glycotechnol. , vol.15 , pp. 57-64
    • Nakakuki, T.1
  • 33
    • 0025917958 scopus 로고
    • Maltotetraose-forming, amylase-mediated, p-nitrophenyl α-and β-maltopentaoside formation in an aqueous - Organic solvent system: A substrate for human amylase in serum
    • K. Ogawa, T. Murata, and T. Usui Maltotetraose-forming, amylase-mediated, p-nitrophenyl α-and β-maltopentaoside formation in an aqueous - organic solvent system: a substrate for human amylase in serum Carbohydr. Res. 212 1991 289 294
    • (1991) Carbohydr. Res. , vol.212 , pp. 289-294
    • Ogawa, K.1    Murata, T.2    Usui, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.