Effects of buffer composition and dilution on nanowire field-effect biosensors

Nanotechnology

Volumn 24, Issue 3, 2013, Pages

  Lloret, Noémie ^a   Frederiksen, Rune S ^a   Møller, Thor C ^a   Rieben, Nathalie I ^a   Upadhyay, Shivendra ^b   De Vico, Luca ^a   Jensen, Jan H ^a   Nygård, Jesper ^b   Martinez, Karen L ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

BUFFER COMPOSITION; FIELD-EFFECT; LABEL-FREE BIOSENSOR; PH STABILITY; PROTEIN-PROTEIN INTERACTIONS; THREE MODELS;

BIOSENSORS; FIELD EFFECT TRANSISTORS; NANOWIRES; SENSORS;

PROTEINS;

BUFFER; NANOWIRE; PROTEIN;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; EQUIPMENT; GENETIC PROCEDURES; METABOLISM; PH; PROTEIN ANALYSIS; PROTEIN BINDING; SEMICONDUCTOR;

BIOSENSING TECHNIQUES; BUFFERS; HYDROGEN-ION CONCENTRATION; MODELS, MOLECULAR; NANOWIRES; PROTEIN BINDING; PROTEIN INTERACTION MAPPING; PROTEINS; TRANSISTORS, ELECTRONIC;

EID: 84871550991     PISSN: 09574484     EISSN: 13616528     Source Type: Journal    
DOI: 10.1088/0957-4484/24/3/035501     Document Type: Article

References (51)

1. Chen K-I, Li B-R and Chen Y-T 2011 Silicon nanowire field-effect transistor-based biosensors for biomedical diagnosis and cellular recording investigation Nano Today 6 131-54
2. Zheng G, Patolsky F, Cui Y, Wang W U and Lieber C M 2005 Multiplexed electrical detection of cancer markers with nanowire sensor arrays Nature Biotechnol. 23 1294-301 (Pubitemid 41486858)
3. Misra N, Martinez J A, Huang S-C J, Wang Y, Stroeve P, Grigoropoulos C P and Noy A 2009 Bioelectronic silicon nanowire devices using functional membrane proteins Proc. Natl Acad. Sci. USA 106 13780-4
4. Zhang G-J, Zhang G, Chua J H, Chee R-E, Wong E H, Agarwal A, Buddharaju K D, Singh N, Gao Z and Balasubramanian N 2008 DNA sensing by silicon nanowire: charge layer distance dependence Nano Lett. 8 1066-70
5. Patolsky F, Zheng G, Hayden O, Lakadamyali M, Zhuang X and Lieber C M 2004 Electrical detection of single viruses Proc. Natl Acad. Sci. USA 101 14017 (Pubitemid 39305021)
6. Gao X P A, Zheng G and Lieber C M 2010 Subthreshold regime has the optimal sensitivity for nanowire FET biosensors Nano Lett. 10 547-52
7. Lu M-P, Hsiao C-Y, Lai W-T and Yang Y-S 2010 Probing the sensitivity of nanowire-based biosensors using liquid-gating Nanotechnology 21 425505
8. Nair P R and Alam M A 2010 Theory of Selectivity of label-free nanobiosensors: a geometro-physical perspective J. Appl. Phys. 107 064701
9. Stern E, Wagner R, Sigworth F and Breaker R 2007 Importance of the Debye screening length on nanowire field effect transistor sensors Nano Lett. 7 3405-9 (Pubitemid 350216036)
10. Tarasov A, Wipf M, Stoop R L, Bedner K, Fu W, Guzenko V A, Knopfmacher O, Calame M and Schönenberger C 2012 Understanding the electrolyte background for biochemical sensing with ion-sensitive field-effect transistors ACS Nano 6 9291-8
11. Israelachvili J N 2011 Intermolecular and Surface Forces (New York: Academic Press) chapter 14 (Electrostatic Forces Between Surfaces in Liquids) pp 291-340
12. Lin S-P, Pan C-Y, Tseng K-C, Lin M-C, Chen C-D, Tsai C-C, Yu S-H, Sun Y-C, Lin T-W and Chen Y-T 2009 A reversible surface functionalized nanowire transistor to study protein-protein interactions Nano Today 4 235-43
13. Ishikawa F N et al 2009 Label-free, electrical detection of the SARS virus N-protein with nanowire biosensors utilizing antibody mimics as capture probes ACS Nano 3 1219-24
14. Liu Y-C C, Rieben N, Iversen L, Sørensen B S, Park J, Nygård J and Martinez K L 2010 Specific and reversible immobilization of histidine-tagged proteins on functionalized silicon nanowires Nanotechnology 21 245105
15. Vacic A, Criscione J M, Rajan N K, Stern E D, Fahmy T M and Reed M A 2011 Determination of molecular configuration by Debye length modulation J. Am. Chem. Soc. 133 13886-9
16. Ugwu S O and Apte S P 2004 The effect of buffers on protein conformational stability Pharm. Technol. 28 86-113
17. Cui Y, Wei Q, Park H and Lieber C M 2001 Nanowire nanosensors for highly sensitive and selective detection of biological and chemical species Science 293 1289-92 (Pubitemid 32777412)
18. Im H, Huang X, Gu B and Choi Y 2007 A dielectric-modulated field-effect transistor for biosensing Nature Nanotechnology 2 430-4 (Pubitemid 47035618)
19. Stern E, Klemic J F, Routenberg D A, Wyrembak P N, Turner-Evans D B, Hamilton A D, LaVan D A, Fahmy T M and Reed M A 2007 Label-free immunodetection with CMOS-compatible semiconducting nanowires Nature 445 519-22 (Pubitemid 46197629)
20. Bach A, Chi C N, Olsen T B, Pedersen S W, Røder M U, Pang G F, Clausen R P, Jemth P and Strømgaard K 2008 Modified peptides as potent inhibitors of the postsynaptic density-95/N-methyl-D-aspartate receptor interaction J. Med. Chem. 51 6450-9
21. Furukawa H and Gouaux E 2003 Mechanisms of activation, inhibition and specificity: crystal structures of the NMDA receptor NR1 ligand-binding core EMBO J. 22 2873-85 (Pubitemid 36758609)
22. Kada G, Falk H and Gruber H J 1999 Accurate measurement of avidin and streptavidin in crude biofluids with a new, optimized biotin-fluorescein conjugate Biochem. Biophys. Acta 1427 33-43 (Pubitemid 29123858)
23. Armstrong N, Mayer M and Gouaux E 2003 Tuning activation of the AMPA-sensitive GluR2 ion channel by genetic adjustment of agonist-induced conformational changes Proc. Natl Acad. Sci. USA 100 5736-41 (Pubitemid 36576877)
24. Gutz I G R 2012 CurTiPot - pH and Acid-Base Titration Curves: Analysis and Simulation Software, Version 3.6.1 www2.iq.usp.br/docente/gutz/Curtipot-. html
25. Li H, Robertson A D and Jensen J H 2005 Very fast empirical prediction and rationalization of protein pKa values Proteins Struct. Funct. Bioinform. 61 704-21 (Pubitemid 41753142)
26. Bas D C, Rogers D M and Jensen J H 2008 Very fast prediction and rationalization of pKa values for protein-ligand complexes Proteins Struct. Funct. Bioinform. 73 765-83 (Pubitemid 352788657)
27. Søndergaard C R, Olsson M, Rostkowski M and Jensen J H 2011 Improved treatment of ligands and coupling effects in empirical calculation and rationalization of pKa values J. Chem. Theory Comput. 7 2284-95
28. Olsson M H M, Søndergaard C R, Rostkowski M and Jensen J H 2011 PROPKA3: consistent treatment of internal and surface residues in empirical pKa predictions J. Chem. Theory Comput. 7 525-37
29. De Vico L, Sørensen M H, Iversen L, Rogers D M, Sørensen B S, Brandbyge M, Nygård J, Martinez K L and Jensen J H 2011 Quantifying signal changes in nano-wire based biosensors Nanoscale 3 706-17
30. De Vico L, Iversen L, Sørensen M H, Brandbyge M, Nygård J, Martinez K L and Jensen J H 2011 Predicting and rationalizing the effect of surface charge distribution and orientation on nano-wire based FET bio-sensors Nanoscale 3 3635-40
31. Hediger M R, Jensen J H and De Vico L 2012 BioFET-SIM web interface: implementation and two applications PLoS One 7 e45379
32. Wang W, Chen C, Lin K, Fang Y and Lieber C M 2005 Label-free detection of small-molecule-protein interactions by using nanowire nanosensors Proc. Natl Acad. Sci. USA 102 3208-12 (Pubitemid 40328024)
33. Liu Y-C, Rieben N, Iversen L, Sørensen B, Park J, Nygård J and Martinez K 2010 Specific and reversible immobilization of histidine-tagged proteins on functionalized silicon nanowires Nanotechnology 21 245105
34. Jaenicke R and Závodszky P 1990 Proteins under extreme physical conditions FEBS Lett. 268 344-9 (Pubitemid 20241340)
35. Lindman S, Xue W-F, Szczepankiewicz O, Bauer M C, Nilsson H and Linse S 2006 Salting the charged surface: pH and salt dependence of protein G B1 stability Biophys. J. 90 2911-21
36. Hsiao C-Y, Lin C-H, Hung C-H, Su C-J, Lo Y-R, Lee C-C, Lin H-C, Ko F-H, Huang T-Y and Yang Y-S 2009 Novel poly-silicon nanowire field effect transistor for biosensing application Biosens. Bioelectron. 24 1223-9
37. Kim E and Sheng M 2004 PDZ domain proteins of synapses Nature Rev. Neurosci. 5 771-81 (Pubitemid 39336214)
38. Chi C N, Engstrom A, Gianni S, Larsson M and Jemth P 2006 Two conserved residues govern the salt and pH dependencies of the binding reaction of a PDZ domain J. Biol. Chem. 281 36811-8 (Pubitemid 46042149)
39. Chen G and Gouaux E 1997 Overexpression of a glutamate receptor (GluR2) ligand binding domain in Escherichia coli: application of a novel protein folding screen Proc. Natl Acad. Sci. USA 94 13431-134436 (Pubitemid 28009599)
40. (2) nanowires Biosens. Bioelectron. 25 2436-41
41. Bauduin P, Nohmie F, Touraud D, Neueder R, Kunz W and Ninham B W 2006 Hofmeister specific-ion effects on enzyme activity and buffer pH: horseradish peroxidase in citrate buffer J. Mol. Liq. 123 14-9 (Pubitemid 41562816)
42. Liu H, Liu Y, Cao X, Wang Z and Wang C 2008 Effects of sodium phosphate buffer on horseradish peroxidase thermal stability J. Therm. Anal. Calorim. 93 569-74
43. 2 -resistance of horseradish peroxidase Int. J. Biol. Macromol. 48 566-70
44. Urbansky E T and Schock M R 2000 Understanding, deriving, and computing buffer capacity J. Chem. Educ. 77 1640-4
45. Chua J H, Chee R-E, Agarwal A, Wong S M and Zhang G-J 2009 Label-free electrical detection of cardiac biomarker with complementary metal-oxide semiconductor-compatible silicon nanowire sensor arrays Anal. Chem. 81 6266-71
46. Tsai C C, Chiang P L, Sun C J, Lin T W, Tsai M H, Chang Y C and Chen Y T 2011 Surface potential variations on a silicon nanowire transistor in biomolecular modification and detection Nanotechnology 22 135503
47. Zhang G-J, Luo Z H H, Huang M J, Ang J A J, Kang T G and Ji H 2011 An integrated chip for rapid, sensitive, and multiplexed detection of cardiac biomarkers from fingerprick blood Biosens. Bioelectron. 28 459-63
48. Tian R, Regonda S, Gao J, Liu Y and Hu W 2011 Ultrasensitive protein detection using lithographically defined Si multi-nanowire field effect transistors Lab Chip 11 1952-61
49. Chang H-K, Ishikawa F N, Zhang R, Datar R, Cote R J, Thompson M E and Zhou C 2011 Rapid, label-free, electrical whole blood bioassay based on nanobiosensor systems ACS Nano 5 9883-91
50. Park C W, Ah C S, Ahn C-G, Yang J-H, Kim A, Kim T-Y and Sung G Y 2011 Analysis of configuration of surface-immobilized proteins by Si nanochannel field effect transistor biosensor Sensors Actuators B 154 164-8
51. Humphrey W, Dalke A and Schulten K 1996 VMD: visual molecular dynamics J. Mol. Graph. 14 33-8 (Pubitemid 26152973)