-
1
-
-
84872874235
-
Development of Cleaved Amplified Polymorphic Sequence (CAPS) markers for Acacia hybrid (A. mangium x A. auriculiformis)
-
Marriott Hotel, Putrajaya, Malaysia: Unpublished conference proceedings
-
Ng CH, Norwati M, Lee SL, Wickneswari R. Development of Cleaved Amplified Polymorphic Sequence (CAPS) markers for Acacia hybrid (A. mangium x A. auriculiformis). Acacia research in Malaysia: Current updates on Acacia genomics and breeding 2005, 29-34. Marriott Hotel, Putrajaya, Malaysia: Unpublished conference proceedings.
-
(2005)
Acacia research in Malaysia: Current updates on Acacia genomics and breeding
, pp. 29-34
-
-
Ng, C.H.1
Norwati, M.2
Lee, S.L.3
Wickneswari, R.4
-
2
-
-
28344433234
-
Isolation of 15 polymorphic microsatellite loci in Acacia hybrid (Acacia mangium x Acacia auriculiformis)
-
Ng CH, Koh SC, Lee SL, Ng KKS, Mark A, Norwati M, Wickneswari R. Isolation of 15 polymorphic microsatellite loci in Acacia hybrid (Acacia mangium x Acacia auriculiformis). Molecular Ecology Notes 2005, 5(3):572-575.
-
(2005)
Molecular Ecology Notes
, vol.5
, Issue.3
, pp. 572-575
-
-
Ng, C.H.1
Koh, S.C.2
Lee, S.L.3
Ng, K.K.S.4
Mark, A.5
Norwati, M.6
Wickneswari, R.7
-
3
-
-
78650156800
-
Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2010-30 September 2010
-
Aggarwal RK, Allainguillaume J, Bajay MM, Barthwal S, Bertolino P, Chauhan P, Consuegra S, Croxford A, Dalton DL, Den belder E, Diaz-Ferguson E, Douglas MR, Drees M, Elderson J, Esselink GD, Fernandez-Manjarres JF, Frascaria-Lacoste N, Gabler-Schwarz S, De Leaniz CG, Ginwal HS, Goodisman MAD, Guo B, Hamilton MB, Hayes PK, Hong Y, Kajita T, Kalinowski ST, Keller L, Koop BF, Kotze A, et al. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2010-30 September 2010. Mol Ecol Resour 2011, 11(1):219-222.
-
(2011)
Mol Ecol Resour
, vol.11
, Issue.1
, pp. 219-222
-
-
Aggarwal, R.K.1
Allainguillaume, J.2
Bajay, M.M.3
Barthwal, S.4
Bertolino, P.5
Chauhan, P.6
Consuegra, S.7
Croxford, A.8
Dalton, D.L.9
Den belder, E.10
Diaz-Ferguson, E.11
Douglas, M.R.12
Drees, M.13
Elderson, J.14
Esselink, G.D.15
Fernandez-Manjarres, J.F.16
Frascaria-Lacoste, N.17
Gabler-Schwarz, S.18
De Leaniz, C.G.19
Ginwal, H.S.20
Goodisman, M.A.D.21
Guo, B.22
Hamilton, M.B.23
Hayes, P.K.24
Hong, Y.25
Kajita, T.26
Kalinowski, S.T.27
Keller, L.28
Koop, B.F.29
Kotze, A.30
more..
-
4
-
-
0035654137
-
Accessing genetic variation: genotyping single nucleotide polymorphisms
-
10.1038/35103535, 11733746
-
Syvanen AC. Accessing genetic variation: genotyping single nucleotide polymorphisms. Nat Rev Genet 2001, 2(12):930-942. 10.1038/35103535, 11733746.
-
(2001)
Nat Rev Genet
, vol.2
, Issue.12
, pp. 930-942
-
-
Syvanen, A.C.1
-
5
-
-
0032997217
-
The essence of SNPs
-
10.1016/S0378-1119(99)00219-X, 10395891
-
Brookes AJ. The essence of SNPs. Gene 1999, 234(2):177-186. 10.1016/S0378-1119(99)00219-X, 10395891.
-
(1999)
Gene
, vol.234
, Issue.2
, pp. 177-186
-
-
Brookes, A.J.1
-
6
-
-
0035983148
-
A review on SNP and other types of molecular markers and their use in animal genetics
-
10.1186/1297-9686-34-3-275, 2705447, 12081799
-
Vignal A, Milan D, SanCristobal M, Eggen A. A review on SNP and other types of molecular markers and their use in animal genetics. Genet Sel Evol 2002, 34(3):275-305. 10.1186/1297-9686-34-3-275, 2705447, 12081799.
-
(2002)
Genet Sel Evol
, vol.34
, Issue.3
, pp. 275-305
-
-
Vignal, A.1
Milan, D.2
SanCristobal, M.3
Eggen, A.4
-
7
-
-
0001034695
-
Acacia mangium: a tropical forest tree of the coastal lowlands with low genetic diversity
-
Moran GF, Muona O, Bell JC. Acacia mangium: a tropical forest tree of the coastal lowlands with low genetic diversity. Evolution 1989, 43(1):231-235.
-
(1989)
Evolution
, vol.43
, Issue.1
, pp. 231-235
-
-
Moran, G.F.1
Muona, O.2
Bell, J.C.3
-
8
-
-
0031719375
-
RFLP diversity in the nuclear genome of Acacia mangium
-
Butcher PA, Moran GF, Perkins HD. RFLP diversity in the nuclear genome of Acacia mangium. Heredity 1998, 81(2):205-213.
-
(1998)
Heredity
, vol.81
, Issue.2
, pp. 205-213
-
-
Butcher, P.A.1
Moran, G.F.2
Perkins, H.D.3
-
9
-
-
0024895907
-
Breeding systems and genetic diversity in Acacia auriculiformis and A. crassicarpa
-
Moran GF, Muona O, Bell JC. Breeding systems and genetic diversity in Acacia auriculiformis and A. crassicarpa. Biotropica 1989, 21(3):250-256.
-
(1989)
Biotropica
, vol.21
, Issue.3
, pp. 250-256
-
-
Moran, G.F.1
Muona, O.2
Bell, J.C.3
-
10
-
-
84971086483
-
Genetic Diversity of Natural-Populations of Acacia auriculiformis
-
Wickneswari R, Norwati M. Genetic Diversity of Natural-Populations of Acacia auriculiformis. Aust J Bot 1993, 41(1):65-77.
-
(1993)
Aust J Bot
, vol.41
, Issue.1
, pp. 65-77
-
-
Wickneswari, R.1
Norwati, M.2
-
11
-
-
79960801789
-
Development of sequence characterised amplified region (SCAR) markers in Acacia auriculiformis
-
Yuskianti V, Xiang ZB, Shiraishi S. Development of sequence characterised amplified region (SCAR) markers in Acacia auriculiformis. J Trop For Sci 2011, 23(3):299-304.
-
(2011)
J Trop For Sci
, vol.23
, Issue.3
, pp. 299-304
-
-
Yuskianti, V.1
Xiang, Z.B.2
Shiraishi, S.3
-
12
-
-
79959841120
-
Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
-
10.1186/1471-2164-12-342, 3161972, 21729267
-
Wong MM, Cannon CH, Wickneswari R. Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing. BMC Genomics 2011, 12:342. 10.1186/1471-2164-12-342, 3161972, 21729267.
-
(2011)
BMC Genomics
, vol.12
, pp. 342
-
-
Wong, M.M.1
Cannon, C.H.2
Wickneswari, R.3
-
13
-
-
0035756174
-
High-throughput identification, database storage and analysis of SNPs in EST sequences
-
Useche FJ, Gao G, Harafey M, Rafalski A. High-throughput identification, database storage and analysis of SNPs in EST sequences. Genome informatics series: proceedings of the Workshop on Genome Informatics Workshop on Genome Informatics 2001, 12:194-203.
-
(2001)
Genome informatics series: proceedings of the Workshop on Genome Informatics Workshop on Genome Informatics
, vol.12
, pp. 194-203
-
-
Useche, F.J.1
Gao, G.2
Harafey, M.3
Rafalski, A.4
-
14
-
-
51349127904
-
Single Nucleotide Polymorphism Discovery
-
New York: Springer, Oraguzie NC, Rikkerink EHA, Gardiner SE, Silva HN
-
Edwards D, Forster JW, Cogan NOI, Batley J, Chagné D. Single Nucleotide Polymorphism Discovery. Association Mapping in Plants 2007, 53-76. New York: Springer, Oraguzie NC, Rikkerink EHA, Gardiner SE, Silva HN.
-
(2007)
Association Mapping in Plants
, pp. 53-76
-
-
Edwards, D.1
Forster, J.W.2
Cogan, N.O.I.3
Batley, J.4
Chagné, D.5
-
15
-
-
57149099394
-
Sequencing of natural strains of Arabidopsis thaliana with short reads
-
10.1101/gr.080200.108, 2593571, 18818371
-
Ossowski S, Schneeberger K, Clark RM, Lanz C, Warthmann N, Weigel D. Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res 2008, 18(12):2024-2033. 10.1101/gr.080200.108, 2593571, 18818371.
-
(2008)
Genome Res
, vol.18
, Issue.12
, pp. 2024-2033
-
-
Ossowski, S.1
Schneeberger, K.2
Clark, R.M.3
Lanz, C.4
Warthmann, N.5
Weigel, D.6
-
16
-
-
76749130701
-
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
-
10.1186/1471-2164-11-38, 2817691, 20078886
-
Hyten DL, Cannon SB, Song Q, Weeks N, Fickus EW, Shoemaker RC, Specht JE, Farmer AD, May GD, Cregan PB. High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics 2010, 11:38. 10.1186/1471-2164-11-38, 2817691, 20078886.
-
(2010)
BMC Genomics
, vol.11
, pp. 38
-
-
Hyten, D.L.1
Cannon, S.B.2
Song, Q.3
Weeks, N.4
Fickus, E.W.5
Shoemaker, R.C.6
Specht, J.E.7
Farmer, A.D.8
May, G.D.9
Cregan, P.B.10
-
17
-
-
77955527989
-
High-throughput SNP discovery and assay development in common bean
-
10.1186/1471-2164-11-475, 3091671, 20712881
-
Hyten DL, Song Q, Fickus EW, Quigley CV, Lim JS, Choi IY, Hwang EY, Pastor-Corrales M, Cregan PB. High-throughput SNP discovery and assay development in common bean. BMC Genomics 2010, 11:475. 10.1186/1471-2164-11-475, 3091671, 20712881.
-
(2010)
BMC Genomics
, vol.11
, pp. 475
-
-
Hyten, D.L.1
Song, Q.2
Fickus, E.W.3
Quigley, C.V.4
Lim, J.S.5
Choi, I.Y.6
Hwang, E.Y.7
Pastor-Corrales, M.8
Cregan, P.B.9
-
18
-
-
79952698482
-
Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)
-
10.1186/1471-2164-12-150, 3065436, 21410945
-
Kraus RH, Kerstens HH, Van Hooft P, Crooijmans RP, Van Der Poel JJ, Elmberg J, Vignal A, Huang Y, Li N, Prins HH, Groenen MA. Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos). BMC Genomics 2011, 12:150. 10.1186/1471-2164-12-150, 3065436, 21410945.
-
(2011)
BMC Genomics
, vol.12
, pp. 150
-
-
Kraus, R.H.1
Kerstens, H.H.2
Van Hooft, P.3
Crooijmans, R.P.4
Van Der Poel, J.J.5
Elmberg, J.6
Vignal, A.7
Huang, Y.8
Li, N.9
Prins, H.H.10
Groenen, M.A.11
-
19
-
-
54349120289
-
Quality assessment parameters for EST-derived SNPs from catfish
-
10.1186/1471-2164-9-450, 2570692, 18826589
-
Wang S, Sha Z, Sonstegard TS, Liu H, Xu P, Somridhivej B, Peatman E, Kucuktas H, Liu Z. Quality assessment parameters for EST-derived SNPs from catfish. BMC Genomics 2008, 9:450. 10.1186/1471-2164-9-450, 2570692, 18826589.
-
(2008)
BMC Genomics
, vol.9
, pp. 450
-
-
Wang, S.1
Sha, Z.2
Sonstegard, T.S.3
Liu, H.4
Xu, P.5
Somridhivej, B.6
Peatman, E.7
Kucuktas, H.8
Liu, Z.9
-
20
-
-
79955120860
-
Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
-
10.1186/1471-2164-12-199, 3112146, 21504589
-
Yang SS, Tu ZJ, Cheung F, Xu WW, Lamb JF, Jung HJ, Vance CP, Gronwald JW. Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems. BMC Genomics 2011, 12:199. 10.1186/1471-2164-12-199, 3112146, 21504589.
-
(2011)
BMC Genomics
, vol.12
, pp. 199
-
-
Yang, S.S.1
Tu, Z.J.2
Cheung, F.3
Xu, W.W.4
Lamb, J.F.5
Jung, H.J.6
Vance, C.P.7
Gronwald, J.W.8
-
21
-
-
48249125753
-
High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
-
10.1186/1471-2164-9-312, 2483731, 18590545
-
Novaes E, Drost DR, Farmerie WG, Pappas GJ, Grattapaglia D, Sederoff RR, Kirst M. High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC Genomics 2008, 9:312. 10.1186/1471-2164-9-312, 2483731, 18590545.
-
(2008)
BMC Genomics
, vol.9
, pp. 312
-
-
Novaes, E.1
Drost, D.R.2
Farmerie, W.G.3
Pappas, G.J.4
Grattapaglia, D.5
Sederoff, R.R.6
Kirst, M.7
-
22
-
-
33845984917
-
Gene discovery and annotation using LCM-454 transcriptome sequencing
-
1716268, 17095711
-
Emrich SJ, Barbazuk WB, Li L, Schnable PS. Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res 2007, 17(1):69-73. 1716268, 17095711.
-
(2007)
Genome Res
, vol.17
, Issue.1
, pp. 69-73
-
-
Emrich, S.J.1
Barbazuk, W.B.2
Li, L.3
Schnable, P.S.4
-
23
-
-
81555205693
-
Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake
-
10.1371/journal.pone.0028008, 3222667, 22132191
-
Milano I, Babbucci M, Panitz F, Ogden R, Nielsen RO, Taylor MI, Helyar SJ, Carvalho GR, Espineira M, Atanassova M, Tinti F, Maes GE, Patarnello T, Bargelloni L. Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake. PLoS One 2011, 6(11):e28008. 10.1371/journal.pone.0028008, 3222667, 22132191.
-
(2011)
PLoS One
, vol.6
, Issue.11
-
-
Milano, I.1
Babbucci, M.2
Panitz, F.3
Ogden, R.4
Nielsen, R.O.5
Taylor, M.I.6
Helyar, S.J.7
Carvalho, G.R.8
Espineira, M.9
Atanassova, M.10
Tinti, F.11
Maes, G.E.12
Patarnello, T.13
Bargelloni, L.14
-
24
-
-
73449113028
-
Next-generation sequencing methods: impact of sequencing accuracy on SNP discovery
-
10.1007/978-1-60327-411-1_5, 19768588
-
Chan EY. Next-generation sequencing methods: impact of sequencing accuracy on SNP discovery. Methods Mol Biol 2009, 578:95-111. 10.1007/978-1-60327-411-1_5, 19768588.
-
(2009)
Methods Mol Biol
, vol.578
, pp. 95-111
-
-
Chan, E.Y.1
-
26
-
-
45549086886
-
Array-based high-throughput DNA markers for crop improvement
-
10.1038/hdy.2008.35, 18461083
-
Gupta PK, Rustgi S, Mir RR. Array-based high-throughput DNA markers for crop improvement. Heredity 2008, 101(1):5-18. 10.1038/hdy.2008.35, 18461083.
-
(2008)
Heredity
, vol.101
, Issue.1
, pp. 5-18
-
-
Gupta, P.K.1
Rustgi, S.2
Mir, R.R.3
-
27
-
-
20244367169
-
High-throughput SNP genotyping on universal bead arrays
-
Shen R, Fan JB, Campbell D, Chang W, Chen J, Doucet D, Yeakley J, Bibikova M, Wickham Garcia E, McBride C, Steemers F, Garcia F, Kermani BG, Gunderson K, Oliphant A. High-throughput SNP genotyping on universal bead arrays. Mutat Res 2005, 573(1-2):70-82.
-
(2005)
Mutat Res
, vol.573
, Issue.1-2
, pp. 70-82
-
-
Shen, R.1
Fan, J.B.2
Campbell, D.3
Chang, W.4
Chen, J.5
Doucet, D.6
Yeakley, J.7
Bibikova, M.8
Wickham Garcia, E.9
McBride, C.10
Steemers, F.11
Garcia, F.12
Kermani, B.G.13
Gunderson, K.14
Oliphant, A.15
-
28
-
-
84872868341
-
-
MyIllumina http://icom.illumina.com/.
-
MyIllumina
-
-
-
29
-
-
58149299721
-
Medium- to high-throughput SNP genotyping using VeraCode microbeads
-
10.1007/978-1-59745-553-4_10, 18839109
-
Lin CH, Yeakley JM, McDaniel TK, Shen R. Medium- to high-throughput SNP genotyping using VeraCode microbeads. Methods Mol Biol 2009, 496:129-142. 10.1007/978-1-59745-553-4_10, 18839109.
-
(2009)
Methods Mol Biol
, vol.496
, pp. 129-142
-
-
Lin, C.H.1
Yeakley, J.M.2
McDaniel, T.K.3
Shen, R.4
-
30
-
-
2442667212
-
Highly parallel SNP genotyping
-
10.1101/sqb.2003.68.69, 15338605
-
Fan JB, Oliphant A, Shen R, Kermani BG, Garcia F, Gunderson KL, Hansen M, Steemers F, Butler SL, Deloukas P, Galver L, Hunt S, McBride C, Bibikova M, Rubano T, Chen J, Wickham E, Doucet D, Chang W, Campbell D, Zhang B, Kruglyak S, Bentley D, Haas J, Rigault P, Zhou L, Stuelpnagel J, Chee MS. Highly parallel SNP genotyping. Cold Spring Harb Symp Quant Biol 2003, 68:69-78. 10.1101/sqb.2003.68.69, 15338605.
-
(2003)
Cold Spring Harb Symp Quant Biol
, vol.68
, pp. 69-78
-
-
Fan, J.B.1
Oliphant, A.2
Shen, R.3
Kermani, B.G.4
Garcia, F.5
Gunderson, K.L.6
Hansen, M.7
Steemers, F.8
Butler, S.L.9
Deloukas, P.10
Galver, L.11
Hunt, S.12
McBride, C.13
Bibikova, M.14
Rubano, T.15
Chen, J.16
Wickham, E.17
Doucet, D.18
Chang, W.19
Campbell, D.20
Zhang, B.21
Kruglyak, S.22
Bentley, D.23
Haas, J.24
Rigault, P.25
Zhou, L.26
Stuelpnagel, J.27
Chee, M.S.28
more..
-
31
-
-
57349107224
-
High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)
-
Eckert AJ, Pande B, Ersoz ES, Wright MH, Rashbrook VK, Nicolet CM, Neale DB. High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.). Tree Genetics and Genomes 2009, 5(1):225-234.
-
(2009)
Tree Genetics and Genomes
, vol.5
, Issue.1
, pp. 225-234
-
-
Eckert, A.J.1
Pande, B.2
Ersoz, E.S.3
Wright, M.H.4
Rashbrook, V.K.5
Nicolet, C.M.6
Neale, D.B.7
-
32
-
-
77955241616
-
In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?
-
10.1371/journal.pone.0011034, 2882948, 20543950
-
Lepoittevin C, Frigerio JM, Garnier-Gere P, Salin F, Cervera MT, Vornam B, Harvengt L, Plomion C. In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?. PLoS One 2010, 5(6):e11034. 10.1371/journal.pone.0011034, 2882948, 20543950.
-
(2010)
PLoS One
, vol.5
, Issue.6
-
-
Lepoittevin, C.1
Frigerio, J.M.2
Garnier-Gere, P.3
Salin, F.4
Cervera, M.T.5
Vornam, B.6
Harvengt, L.7
Plomion, C.8
-
33
-
-
39549102178
-
Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce
-
10.1186/1471-2164-9-21, 2246113, 18205909
-
Pavy N, Pelgas B, Beauseigle S, Blais S, Gagnon F, Gosselin I, Lamothe M, Isabel N, Bousquet J. Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce. BMC Genomics 2008, 9:21. 10.1186/1471-2164-9-21, 2246113, 18205909.
-
(2008)
BMC Genomics
, vol.9
, pp. 21
-
-
Pavy, N.1
Pelgas, B.2
Beauseigle, S.3
Blais, S.4
Gagnon, F.5
Gosselin, I.6
Lamothe, M.7
Isabel, N.8
Bousquet, J.9
-
34
-
-
60549085203
-
A SNP transferability survey within the genus Vitis
-
10.1186/1471-2229-8-128, 2631481, 19087337
-
Vezzulli S, Micheletti D, Riaz S, Pindo M, Viola R, This P, Walker MA, Troggio M, Velasco R. A SNP transferability survey within the genus Vitis. BMC Plant Biol 2008, 8:128. 10.1186/1471-2229-8-128, 2631481, 19087337.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 128
-
-
Vezzulli, S.1
Micheletti, D.2
Riaz, S.3
Pindo, M.4
Viola, R.5
This, P.6
Walker, M.A.7
Troggio, M.8
Velasco, R.9
-
35
-
-
79953839352
-
High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species
-
10.1186/1471-2229-11-65, 3090336, 21492434
-
Grattapaglia D, Silva-Junior OB, Kirst M, de Lima BM, Faria DA, Pappas GJ. High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species. BMC Plant Biol 2011, 11:65. 10.1186/1471-2229-11-65, 3090336, 21492434.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 65
-
-
Grattapaglia, D.1
Silva-Junior, O.B.2
Kirst, M.3
de Lima, B.M.4
Faria, D.A.5
Pappas, G.J.6
-
36
-
-
33748126341
-
Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs
-
10.1186/1471-2164-7-174, 1557672, 16824208
-
Pavy N, Parsons LS, Paule C, MacKay J, Bousquet J. Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs. BMC Genomics 2006, 7:174. 10.1186/1471-2164-7-174, 1557672, 16824208.
-
(2006)
BMC Genomics
, vol.7
, pp. 174
-
-
Pavy, N.1
Parsons, L.S.2
Paule, C.3
MacKay, J.4
Bousquet, J.5
-
37
-
-
84856585935
-
Phytozome: a comparative platform for green plant genomics
-
3245001, 22110026, Database issue
-
Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, Fazo J, Mitros T, Dirks W, Hellsten U, Putnam N, Rokhsar DS. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res 2012, 40(Database issue):D1178-D1186. 3245001, 22110026.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Goodstein, D.M.1
Shu, S.2
Howson, R.3
Neupane, R.4
Hayes, R.D.5
Fazo, J.6
Mitros, T.7
Dirks, W.8
Hellsten, U.9
Putnam, N.10
Rokhsar, D.S.11
-
38
-
-
79959941080
-
Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum
-
10.1186/1471-2164-12-352, 3146956, 21736744
-
Nelson JC, Wang S, Wu Y, Li X, Antony G, White FF, Yu J. Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum. BMC Genomics 2011, 12:352. 10.1186/1471-2164-12-352, 3146956, 21736744.
-
(2011)
BMC Genomics
, vol.12
, pp. 352
-
-
Nelson, J.C.1
Wang, S.2
Wu, Y.3
Li, X.4
Antony, G.5
White, F.F.6
Yu, J.7
-
39
-
-
79958071911
-
Single nucleotide polymorphism discovery in elite North American potato germplasm
-
10.1186/1471-2164-12-302, 3128068, 21658273
-
Hamilton JP, Hansey CN, Whitty BR, Stoffel K, Massa AN, Van Deynze A, De Jong WS, Douches DS, Buell CR. Single nucleotide polymorphism discovery in elite North American potato germplasm. BMC Genomics 2011, 12:302. 10.1186/1471-2164-12-302, 3128068, 21658273.
-
(2011)
BMC Genomics
, vol.12
, pp. 302
-
-
Hamilton, J.P.1
Hansey, C.N.2
Whitty, B.R.3
Stoffel, K.4
Massa, A.N.5
Van Deynze, A.6
De Jong, W.S.7
Douches, D.S.8
Buell, C.R.9
-
40
-
-
71949101266
-
Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library
-
10.1186/1471-2164-10-559, 2790473, 19939274
-
Sanchez CC, Smith TP, Wiedmann RT, Vallejo RL, Salem M, Yao J, Rexroad CE. Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library. BMC Genomics 2009, 10:559. 10.1186/1471-2164-10-559, 2790473, 19939274.
-
(2009)
BMC Genomics
, vol.10
, pp. 559
-
-
Sanchez, C.C.1
Smith, T.P.2
Wiedmann, R.T.3
Vallejo, R.L.4
Salem, M.5
Yao, J.6
Rexroad, C.E.7
-
41
-
-
77951241851
-
Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)
-
10.1186/1471-2164-11-191, 2846918, 20307277
-
Hubert S, Higgins B, Borza T, Bowman S. Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua). BMC Genomics 2010, 11:191. 10.1186/1471-2164-11-191, 2846918, 20307277.
-
(2010)
BMC Genomics
, vol.11
, pp. 191
-
-
Hubert, S.1
Higgins, B.2
Borza, T.3
Bowman, S.4
-
42
-
-
84859789584
-
A transcriptome map of perennial ryegrass (Lolium perenne L.)
-
10.1186/1471-2164-13-140, 3483695, 22513206
-
Studer B, Byrne S, Nielsen RO, Panitz F, Bendixen C, Islam MS, Pfeifer M, Lubberstedt T, Asp T. A transcriptome map of perennial ryegrass (Lolium perenne L.). BMC Genomics 2012, 13(1):140. 10.1186/1471-2164-13-140, 3483695, 22513206.
-
(2012)
BMC Genomics
, vol.13
, Issue.1
, pp. 140
-
-
Studer, B.1
Byrne, S.2
Nielsen, R.O.3
Panitz, F.4
Bendixen, C.5
Islam, M.S.6
Pfeifer, M.7
Lubberstedt, T.8
Asp, T.9
-
43
-
-
39749125665
-
Diversity in conserved genes in tomato
-
10.1186/1471-2164-8-465, 2249608, 18088428
-
Van Deynze A, Stoffel K, Buell CR, Kozik A, Liu J, van der Knaap E, Francis D. Diversity in conserved genes in tomato. BMC Genomics 2007, 8:465. 10.1186/1471-2164-8-465, 2249608, 18088428.
-
(2007)
BMC Genomics
, vol.8
, pp. 465
-
-
Van Deynze, A.1
Stoffel, K.2
Buell, C.R.3
Kozik, A.4
Liu, J.5
van der Knaap, E.6
Francis, D.7
-
44
-
-
57349143795
-
Identification of COS markers in the Pinaceae
-
10.1007/s11295-008-0189-2, 23345109
-
Liewlaksaneeyanawin C, Zhuang J, Tang M, Farzaneh N, Lueng G, Cullis C, Findlay S, Ritland C, Bohlmann J, Ritland K. Identification of COS markers in the Pinaceae. Tree Genetics & Genomes 2009, 5(1):247-255. 10.1007/s11295-008-0189-2, 23345109.
-
(2009)
Tree Genetics & Genomes
, vol.5
, Issue.1
, pp. 247-255
-
-
Liewlaksaneeyanawin, C.1
Zhuang, J.2
Tang, M.3
Farzaneh, N.4
Lueng, G.5
Cullis, C.6
Findlay, S.7
Ritland, C.8
Bohlmann, J.9
Ritland, K.10
-
45
-
-
33750305245
-
QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species
-
10.1186/1471-2105-7-438, 1618865, 17029635
-
Tang J, Vosman B, Voorrips RE, van der Linden CG, Leunissen JA. QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species. BMC Bioinformatics 2006, 7:438. 10.1186/1471-2105-7-438, 1618865, 17029635.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 438
-
-
Tang, J.1
Vosman, B.2
Voorrips, R.E.3
van der Linden, C.G.4
Leunissen, J.A.5
-
46
-
-
42249087308
-
The complete genome of an individual by massively parallel DNA sequencing
-
10.1038/nature06884, 18421352
-
Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM. The complete genome of an individual by massively parallel DNA sequencing. Nature 2008, 452(7189):872-876. 10.1038/nature06884, 18421352.
-
(2008)
Nature
, vol.452
, Issue.7189
, pp. 872-876
-
-
Wheeler, D.A.1
Srinivasan, M.2
Egholm, M.3
Shen, Y.4
Chen, L.5
McGuire, A.6
He, W.7
Chen, Y.J.8
Makhijani, V.9
Roth, G.T.10
Gomes, X.11
Tartaro, K.12
Niazi, F.13
Turcotte, C.L.14
Irzyk, G.P.15
Lupski, J.R.16
Chinault, C.17
Song, X.Z.18
Liu, Y.19
Yuan, Y.20
Nazareth, L.21
Qin, X.22
Muzny, D.M.23
Margulies, M.24
Weinstock, G.M.25
Gibbs, R.A.26
Rothberg, J.M.27
more..
-
47
-
-
73449108400
-
Development and implementation of high-throughput SNP genotyping in barley
-
10.1186/1471-2164-10-582, 2797026, 19961604
-
Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S, Bozdag S, Roose ML, Moscou MJ, Chao S, Varshney RK, Szucs P, Sato K, Hayes PM, Matthews DE, Kleinhofs A, Muehlbauer GJ, DeYoung J, Marshall DF, Madishetty K, Fenton RD, Condamine P, Graner A, Waugh R. Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 2009, 10:582. 10.1186/1471-2164-10-582, 2797026, 19961604.
-
(2009)
BMC Genomics
, vol.10
, pp. 582
-
-
Close, T.J.1
Bhat, P.R.2
Lonardi, S.3
Wu, Y.4
Rostoks, N.5
Ramsay, L.6
Druka, A.7
Stein, N.8
Svensson, J.T.9
Wanamaker, S.10
Bozdag, S.11
Roose, M.L.12
Moscou, M.J.13
Chao, S.14
Varshney, R.K.15
Szucs, P.16
Sato, K.17
Hayes, P.M.18
Matthews, D.E.19
Kleinhofs, A.20
Muehlbauer, G.J.21
DeYoung, J.22
Marshall, D.F.23
Madishetty, K.24
Fenton, R.D.25
Condamine, P.26
Graner, A.27
Waugh, R.28
more..
-
48
-
-
42149108480
-
High-throughput genotyping with the GoldenGate assay in the complex genome of soybean
-
10.1007/s00122-008-0726-2, 18278477
-
Hyten DL, Song Q, Choi IY, Yoon MS, Specht JE, Matukumalli LK, Nelson RL, Shoemaker RC, Young ND, Cregan PB. High-throughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor Appl Genet 2008, 116(7):945-952. 10.1007/s00122-008-0726-2, 18278477.
-
(2008)
Theor Appl Genet
, vol.116
, Issue.7
, pp. 945-952
-
-
Hyten, D.L.1
Song, Q.2
Choi, I.Y.3
Yoon, M.S.4
Specht, J.E.5
Matukumalli, L.K.6
Nelson, R.L.7
Shoemaker, R.C.8
Young, N.D.9
Cregan, P.B.10
-
49
-
-
77955391799
-
Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea
-
10.1186/1471-2164-11-468, 3091664, 20701750
-
Deulvot C, Charrel H, Marty A, Jacquin F, Donnadieu C, Lejeune-Henaut I, Burstin J, Aubert G. Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea. BMC Genomics 2010, 11:468. 10.1186/1471-2164-11-468, 3091664, 20701750.
-
(2010)
BMC Genomics
, vol.11
, pp. 468
-
-
Deulvot, C.1
Charrel, H.2
Marty, A.3
Jacquin, F.4
Donnadieu, C.5
Lejeune-Henaut, I.6
Burstin, J.7
Aubert, G.8
-
50
-
-
84861794345
-
Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassava
-
10.1007/s00122-011-1739-9, 22069119
-
Ferguson ME, Hearne SJ, Close TJ, Wanamaker S, Moskal WA, Town CD, de Young J, Marri PR, Rabbi IY, de Villiers EP. Identification, validation and high-throughput genotyping of transcribed gene SNPs in cassava. Theor Appl Genet 2012, 124(4):685-695. 10.1007/s00122-011-1739-9, 22069119.
-
(2012)
Theor Appl Genet
, vol.124
, Issue.4
, pp. 685-695
-
-
Ferguson, M.E.1
Hearne, S.J.2
Close, T.J.3
Wanamaker, S.4
Moskal, W.A.5
Town, C.D.6
de Young, J.7
Marri, P.R.8
Rabbi, I.Y.9
de Villiers, E.P.10
-
51
-
-
77952424242
-
A pipeline for high throughput detection and mapping of SNPs from EST databases
-
10.1007/s11032-009-9377-5, 2869401, 20502512
-
Anithakumari AM, Tang J, van Eck HJ, Visser RG, Leunissen JA, Vosman B, van der Linden CG. A pipeline for high throughput detection and mapping of SNPs from EST databases. Mol Breed 2010, 26(1):65-75. 10.1007/s11032-009-9377-5, 2869401, 20502512.
-
(2010)
Mol Breed
, vol.26
, Issue.1
, pp. 65-75
-
-
Anithakumari, A.M.1
Tang, J.2
van Eck, H.J.3
Visser, R.G.4
Leunissen, J.A.5
Vosman, B.6
van der Linden, C.G.7
-
52
-
-
67749088031
-
Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay
-
10.1007/s00122-009-1059-5, 2715469, 19449174
-
Akhunov E, Nicolet C, Dvorak J. Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay. Theor Appl Genet 2009, 119(3):507-517. 10.1007/s00122-009-1059-5, 2715469, 19449174.
-
(2009)
Theor Appl Genet
, vol.119
, Issue.3
, pp. 507-517
-
-
Akhunov, E.1
Nicolet, C.2
Dvorak, J.3
-
53
-
-
84858168186
-
The construction of a high-density linkage map for identifying SNP markers that are tightly linked to a nuclear-recessive major gene for male sterility in Cryptomeria japonica D
-
Moriguchi Y, Ujino-Ihara T, Uchiyama K, Futamura N, Saito M, Ueno S, Matsumoto A, Tani N, Taira H, Shinohara K, Tsumura Y. The construction of a high-density linkage map for identifying SNP markers that are tightly linked to a nuclear-recessive major gene for male sterility in Cryptomeria japonica D. Don. BMC Genomics 2012, 13(1):95.
-
(2012)
Don. BMC Genomics
, vol.13
, Issue.1
, pp. 95
-
-
Moriguchi, Y.1
Ujino-Ihara, T.2
Uchiyama, K.3
Futamura, N.4
Saito, M.5
Ueno, S.6
Matsumoto, A.7
Tani, N.8
Taira, H.9
Shinohara, K.10
Tsumura, Y.11
-
54
-
-
77949492289
-
Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing
-
Zhang L, Guo X. Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing. Aquaculture 2010, 302(1-2):124-129.
-
(2010)
Aquaculture
, vol.302
, Issue.1-2
, pp. 124-129
-
-
Zhang, L.1
Guo, X.2
-
55
-
-
79960892661
-
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
-
10.1186/1471-2164-12-389, 3224100, 21810238
-
Iorizzo M, Senalik DA, Grzebelus D, Bowman M, Cavagnaro PF, Matvienko M, Ashrafi H, Van Deynze A, Simon PW. De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity. BMC Genomics 2011, 12:389. 10.1186/1471-2164-12-389, 3224100, 21810238.
-
(2011)
BMC Genomics
, vol.12
, pp. 389
-
-
Iorizzo, M.1
Senalik, D.A.2
Grzebelus, D.3
Bowman, M.4
Cavagnaro, P.F.5
Matvienko, M.6
Ashrafi, H.7
Van Deynze, A.8
Simon, P.W.9
-
56
-
-
27244454556
-
The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond
-
10.1104/pp.105.060707, 1176404, 16010005
-
Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD. The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond. Plant Physiol 2005, 138(3):1310-1317. 10.1104/pp.105.060707, 1176404, 16010005.
-
(2005)
Plant Physiol
, vol.138
, Issue.3
, pp. 1310-1317
-
-
Mueller, L.A.1
Solow, T.H.2
Taylor, N.3
Skwarecki, B.4
Buels, R.5
Binns, J.6
Lin, C.7
Wright, M.H.8
Ahrens, R.9
Wang, Y.10
Herbst, E.V.11
Keyder, E.R.12
Menda, N.13
Zamir, D.14
Tanksley, S.D.15
-
58
-
-
77950554227
-
Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation
-
10.1186/1756-0500-3-39, 2848685, 20175893
-
Tindall EA, Petersen DC, Nikolaysen S, Miller W, Schuster SC, Hayes VM. Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation. BMC Res Notes 2010, 3:39. 10.1186/1756-0500-3-39, 2848685, 20175893.
-
(2010)
BMC Res Notes
, vol.3
, pp. 39
-
-
Tindall, E.A.1
Petersen, D.C.2
Nikolaysen, S.3
Miller, W.4
Schuster, S.C.5
Hayes, V.M.6
-
59
-
-
84869862330
-
Single nucleotide polymorphisms in Cryptomeria japonica: their discovery and validation for genome mapping and diversity studies.
-
Uchiyama K, Ujino-Ihara T, Ueno S, Taguchi Y, Futamura N, Shinohara K, Tsumura Y. Single nucleotide polymorphisms in Cryptomeria japonica: their discovery and validation for genome mapping and diversity studies. Tree Genetics & Genomes 2012, 8(6):1-10.
-
(2012)
Tree Genetics & Genomes
, vol.8
, Issue.6
, pp. 1-10
-
-
Uchiyama, K.1
Ujino-Ihara, T.2
Ueno, S.3
Taguchi, Y.4
Futamura, N.5
Shinohara, K.6
Tsumura, Y.7
-
60
-
-
78449269099
-
ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations
-
10.1093/bioinformatics/btq533, 2982150, 20926420
-
Wright MH, Tung CW, Zhao K, Reynolds A, McCouch SR, Bustamante CD. ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations. Bioinformatics 2010, 26(23):2952-2960. 10.1093/bioinformatics/btq533, 2982150, 20926420.
-
(2010)
Bioinformatics
, vol.26
, Issue.23
, pp. 2952-2960
-
-
Wright, M.H.1
Tung, C.W.2
Zhao, K.3
Reynolds, A.4
McCouch, S.R.5
Bustamante, C.D.6
-
61
-
-
70949092573
-
Laboratory Methods for High-Throughput Genotyping
-
pdb.top62, 10.1101/pdb.top62, 20150074
-
Edenberg HJ, Liu Y. Laboratory Methods for High-Throughput Genotyping. Cold Spring Harbor Protocols 2009, 2009(11):pdb.top62. 10.1101/pdb.top62, 20150074.
-
(2009)
Cold Spring Harbor Protocols
, vol.2009
, Issue.11
-
-
Edenberg, H.J.1
Liu, Y.2
-
62
-
-
84934437963
-
BeadArray-based genotyping
-
10.1007/978-1-59745-188-8_4, 18370095
-
Butler H, Ragoussis J. BeadArray-based genotyping. Methods Mol Biol 2008, 439:53-74. 10.1007/978-1-59745-188-8_4, 18370095.
-
(2008)
Methods Mol Biol
, vol.439
, pp. 53-74
-
-
Butler, H.1
Ragoussis, J.2
-
64
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
10.1186/gb-2004-5-2-r12, 395750, 14759262
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL. Versatile and open software for comparing large genomes. Genome Biol 2004, 5(2):R12. 10.1186/gb-2004-5-2-r12, 395750, 14759262.
-
(2004)
Genome Biol
, vol.5
, Issue.2
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
65
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10(3):R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
66
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
10.1093/bioinformatics/btp324, 2705234, 19451168
-
Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25(14):1754-1760. 10.1093/bioinformatics/btp324, 2705234, 19451168.
-
(2009)
Bioinformatics
, vol.25
, Issue.14
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
67
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
10.1093/bioinformatics/btp352, 2723002, 19505943
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009, 25(16):2078-2079. 10.1093/bioinformatics/btp352, 2723002, 19505943.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
68
-
-
60249088067
-
Extensive DNA sequence variations in two lignin genes, Cinnamate 4-hydroxylase and Cinnamyl Alcohol Dehydrogenase from Acacia mangium and Acacia auriculiformis
-
Nur Fariza MS, Pang SL, Choong CY, Wickneswari R. Extensive DNA sequence variations in two lignin genes, Cinnamate 4-hydroxylase and Cinnamyl Alcohol Dehydrogenase from Acacia mangium and Acacia auriculiformis. J Biol Sci 2008, 8(3):687-690.
-
(2008)
J Biol Sci
, vol.8
, Issue.3
, pp. 687-690
-
-
Nur Fariza, M.S.1
Pang, S.L.2
Choong, C.Y.3
Wickneswari, R.4
|