-
1
-
-
81455161623
-
Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection
-
doi:10.1186/1471-2164-12-569
-
Ahmad R, Parfitt DE, Fass J, Ogundiwin E, Dhingra A, Gradziel TM, Lin D, Joshi NA, Martínez-García PJ, Crisosto CH (2011) Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection. BMC Genomics 12: 569. doi: 10. 1186/1471-2164-12-569.
-
(2011)
BMC Genomics
, vol.12
, pp. 569
-
-
Ahmad, R.1
Parfitt, D.E.2
Fass, J.3
Ogundiwin, E.4
Dhingra, A.5
Gradziel, T.M.6
Lin, D.7
Joshi, N.A.8
Martínez-García, P.J.9
Crisosto, C.H.10
-
2
-
-
65349159741
-
New technologies for ultra-high throughput genotyping in plants
-
doi:10.1007/978-1-59745-427-8_2
-
Appleby N, Edwards D, Batley J (2009) New technologies for ultra-high throughput genotyping in plants. Methods Mol Biol 513: 19-39. doi: 10. 1007/978-1-59745-427-8_2.
-
(2009)
Methods Mol Biol
, vol.513
, pp. 19-39
-
-
Appleby, N.1
Edwards, D.2
Batley, J.3
-
3
-
-
84869886280
-
A first insight into peach [Prunus persica (L.) Batsch] SNP variability
-
doi: 10. 1007/s11295-012-0523-6
-
Aranzana MJ, Illa E, Howad W (2012) A first insight into peach [Prunus persica (L.) Batsch] SNP variability. Tree Genet Genomes. doi: 10. 1007/s11295-012-0523-6.
-
(2012)
Tree Genet Genomes
-
-
Aranzana, M.J.1
Illa, E.2
Howad, W.3
-
4
-
-
0000014921
-
Comparison of isozyme variability in peach and almond cultivars
-
Arulsekar S, Parfitt DE, Kester DE (1986) Comparison of isozyme variability in peach and almond cultivars. J Hered 77: 272-274.
-
(1986)
J Hered
, vol.77
, pp. 272-274
-
-
Arulsekar, S.1
Parfitt, D.E.2
Kester, D.E.3
-
5
-
-
84862217085
-
The peach genome
-
doi:10.1007/S11295-012-0493-8
-
Arus P, Verde I, Sosinski B, Zhebentyayeva T, Abbott AG (2012) The peach genome. Tree Genet Genomes 8(3): 531-547. doi: 10. 1007/S11295-012-0493-8.
-
(2012)
Tree Genet Genomes
, vol.8
, Issue.3
, pp. 531-547
-
-
Arus, P.1
Verde, I.2
Sosinski, B.3
Zhebentyayeva, T.4
Abbott, A.G.5
-
6
-
-
0032997217
-
The essence of SNPs
-
Brookes AJ (1999) The essence of SNPs. Gene 234(2): 177-186.
-
(1999)
Gene
, vol.234
, Issue.2
, pp. 177-186
-
-
Brookes, A.J.1
-
7
-
-
77955655805
-
Chilling injury susceptibility in an intra-specific peach [Prunus persica (L.) Batsch] progeny
-
doi:10.1016/J.Postharvbio.2010.06.002
-
Cantin CM, Crisosto CH, Ogundiwin EA, Gradziel T, Torrents J, Moreno MA, Gogorcena Y (2010) Chilling injury susceptibility in an intra-specific peach [Prunus persica (L.) Batsch] progeny. Postharvest Biol Technol 58(2): 79-87. doi: 10. 1016/J. Postharvbio. 2010. 06. 002.
-
(2010)
Postharvest Biol Technol
, vol.58
, Issue.2
, pp. 79-87
-
-
Cantin, C.M.1
Crisosto, C.H.2
Ogundiwin, E.A.3
Gradziel, T.4
Torrents, J.5
Moreno, M.A.6
Gogorcena, Y.7
-
8
-
-
79958132184
-
SNPs occur in regions with less genomic sequence conservation
-
doi: 10. 1371/journal. pone. 0020660
-
Castle JC (2011) SNPs occur in regions with less genomic sequence conservation. PLoS ONE 6(6). doi: 10. 1371/journal. pone. 0020660.
-
(2011)
PLoS ONE
, vol.6
, Issue.6
-
-
Castle, J.C.1
-
9
-
-
84862506964
-
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w (1118); iso-2; iso-3
-
doi:10.4161/fly.19695
-
Cingolani P, Platts A, le Wang L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM (2012) A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w (1118); iso-2; iso-3. Fly 6(2): 80-92. doi: 10. 4161/fly. 19695.
-
(2012)
Fly
, vol.6
, Issue.2
, pp. 80-92
-
-
Cingolani, P.1
Platts, A.2
le Wang, L.3
Coon, M.4
Nguyen, T.5
Wang, L.6
Land, S.J.7
Lu, X.8
Ruden, D.M.9
-
10
-
-
0028343610
-
Rates of transition and transversion in coding sequences since the human-rodent divergence
-
Collins DW, Jukes TH (1994) Rates of transition and transversion in coding sequences since the human-rodent divergence. Genomics 20(3): 386-396.
-
(1994)
Genomics
, vol.20
, Issue.3
, pp. 386-396
-
-
Collins, D.W.1
Jukes, T.H.2
-
11
-
-
0024342297
-
Cytosine methylation and the fate of Cpg dinucleotides in vertebrate genomes
-
Cooper DN, Krawczak M (1989) Cytosine methylation and the fate of Cpg dinucleotides in vertebrate genomes. Hum Genet 83(2): 181-188.
-
(1989)
Hum Genet
, vol.83
, Issue.2
, pp. 181-188
-
-
Cooper, D.N.1
Krawczak, M.2
-
12
-
-
0018185292
-
Molecular-basis of base substitution hotspots in Escherichia coli
-
Coulondre C, Miller JH, Farabaugh PJ, Gilbert W (1978) Molecular-basis of base substitution hotspots in Escherichia coli. Nature 274(5673): 775-780.
-
(1978)
Nature
, vol.274
, Issue.5673
, pp. 775-780
-
-
Coulondre, C.1
Miller, J.H.2
Farabaugh, P.J.3
Gilbert, W.4
-
13
-
-
11844279754
-
Constitutive activity of Sauromatum guttatum alternative oxidase in Schizosaccharomyces pombe implicates residues in addition to conserved cysteines in alpha-keto acid activation
-
doi:10.1016/j.febslet.2004.10.107
-
Crichton PG, Affourtit C, Albury MS, Carre JE, Moore AL (2005) Constitutive activity of Sauromatum guttatum alternative oxidase in Schizosaccharomyces pombe implicates residues in addition to conserved cysteines in alpha-keto acid activation. FEBS Lett 579(2): 331-336. doi: 10. 1016/j. febslet. 2004. 10. 107.
-
(2005)
FEBS Lett
, vol.579
, Issue.2
, pp. 331-336
-
-
Crichton, P.G.1
Affourtit, C.2
Albury, M.S.3
Carre, J.E.4
Moore, A.L.5
-
14
-
-
84872673436
-
Comparative transcript profiling of a peach and its nectarine mutant at harvest reveals differences in gene expression related to storability
-
doi:10.1007/s11295-012-0549-9
-
Dagar A, Pons Puig C, Marti Ibanez C, Ziliotto F, Bonghi C, Crisosto CH, Friedman H, Lurie S, Granell A (2012) Comparative transcript profiling of a peach and its nectarine mutant at harvest reveals differences in gene expression related to storability. Tree Genet Genomes. doi: 10. 1007/s11295-012-0549-9.
-
(2012)
Tree Genet Genomes
-
-
Dagar, A.1
Pons Puig, C.2
Marti Ibanez, C.3
Ziliotto, F.4
Bonghi, C.5
Crisosto, C.H.6
Friedman, H.7
Lurie, S.8
Granell, A.9
-
15
-
-
3042748130
-
Comparative mapping and marker-assisted selection in Rosaceae fruit crops
-
doi:10.1073/pnas.0307937101
-
Dirlewanger E, Graziano E, Joobeur T, Garriga-Caldere F, Cosson P, Howad W, Arús P (2004) Comparative mapping and marker-assisted selection in Rosaceae fruit crops. P Natl Acad Sci USA 101(26): 9891-9896. doi: 10. 1073/pnas. 0307937101.
-
(2004)
P Natl Acad Sci USA
, vol.101
, Issue.26
, pp. 9891-9896
-
-
Dirlewanger, E.1
Graziano, E.2
Joobeur, T.3
Garriga-Caldere, F.4
Cosson, P.5
Howad, W.6
Arús, P.7
-
16
-
-
65349187578
-
Molecular genetic markers: discovery, applications, data storage and visualisation
-
Duran C, Appleby N, Edwards D, Batley J (2009) Molecular genetic markers: discovery, applications, data storage and visualisation. Curr Bioinform 4(1): 16-27.
-
(2009)
Curr Bioinform
, vol.4
, Issue.1
, pp. 16-27
-
-
Duran, C.1
Appleby, N.2
Edwards, D.3
Batley, J.4
-
17
-
-
84872664055
-
Genetic dissection of aroma volatile compounds from the essential oil of peach fruit: QTL analysis and identification of candidate genes using dense SNP maps
-
doi:10.1007/s11295-012-0546-z
-
Eduardo I, Chietera G, Pirona R, Pacheco I, Troggio M, Banchi E, Bassi D, Rossini L, Vecchietti A, Pozzi C (2012) Genetic dissection of aroma volatile compounds from the essential oil of peach fruit: QTL analysis and identification of candidate genes using dense SNP maps. Tree Genet Genomes. doi: 10. 1007/s11295-012-0546-z.
-
(2012)
Tree Genet Genomes
-
-
Eduardo, I.1
Chietera, G.2
Pirona, R.3
Pacheco, I.4
Troggio, M.5
Banchi, E.6
Bassi, D.7
Rossini, L.8
Vecchietti, A.9
Pozzi, C.10
-
18
-
-
33847364403
-
Gene expression associated with compatible viral diseases in grapevine cultivars
-
doi:10.1007/S10142-006-0031-6
-
Espinoza C, Vega A, Medina C, Schlauch K, Cramer G, Arce-Johnson P (2007) Gene expression associated with compatible viral diseases in grapevine cultivars. Funct Integr Genomics 7(2): 95-110. doi: 10. 1007/S10142-006-0031-6.
-
(2007)
Funct Integr Genomics
, vol.7
, Issue.2
, pp. 95-110
-
-
Espinoza, C.1
Vega, A.2
Medina, C.3
Schlauch, K.4
Cramer, G.5
Arce-Johnson, P.6
-
19
-
-
84875219958
-
Population structure and marker-trait associations for pomological traits in peach and nectarine cultivars
-
doi: 10. 1007/s11295-012-0553-0
-
Font i Forcada C, Oraguzie N, Igartua E, Moreno M, Gogorcena Y (2012) Population structure and marker-trait associations for pomological traits in peach and nectarine cultivars. Tree Genet Genomes 1-19. doi: 10. 1007/s11295-012-0553-0.
-
(2012)
Tree Genet Genomes
, pp. 1-19
-
-
Font i Forcada, C.1
Oraguzie, N.2
Igartua, E.3
Moreno, M.4
Gogorcena, Y.5
-
20
-
-
72449191730
-
Quantitative genetic bases of anthocyanin variation in grape (Vitis vinifera L. ssp. sativa) Berry: a quantitative trait locus to quantitative trait nucleotide integrated study
-
doi:10.1534/Genetics.109.103929
-
Fournier-Level A, Le Cunff L, Gomez C, Doligez A, Ageorges A, Roux C, Bertrand Y, Souquet JM, Cheynier V, This P (2009) Quantitative genetic bases of anthocyanin variation in grape (Vitis vinifera L. ssp. sativa) Berry: a quantitative trait locus to quantitative trait nucleotide integrated study. Genetics 183(3): 1127-1139. doi: 10. 1534/Genetics. 109. 103929.
-
(2009)
Genetics
, vol.183
, Issue.3
, pp. 1127-1139
-
-
Fournier-Level, A.1
Le Cunff, L.2
Gomez, C.3
Doligez, A.4
Ageorges, A.5
Roux, C.6
Bertrand, Y.7
Souquet, J.M.8
Cheynier, V.9
This, P.10
-
21
-
-
0019417156
-
Sequence specificity of methylation in higher-plant DNA
-
Gruenbaum Y, Navehmany T, Cedar H, Razin A (1981) Sequence specificity of methylation in higher-plant DNA. Nature 292(5826): 860-862.
-
(1981)
Nature
, vol.292
, Issue.5826
, pp. 860-862
-
-
Gruenbaum, Y.1
Navehmany, T.2
Cedar, H.3
Razin, A.4
-
22
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
doi:10.1038/Ng.807
-
Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, Schneeberger K, Spannagl M, Wang X, Yang L, Nasrallah ME, Bergelson J, Carrington JC, Gaut BS, Schmutz J, Mayer KFX, de Peer YV, Grigoriev IV, Nordborg M, Weigel D, Guo YL (2011) The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet 43(5): 476-481. doi: 10. 1038/Ng. 807.
-
(2011)
Nat Genet
, vol.43
, Issue.5
, pp. 476-481
-
-
Hu, T.T.1
Pattyn, P.2
Bakker, E.G.3
Cao, J.4
Cheng, J.F.5
Clark, R.M.6
Fahlgren, N.7
Fawcett, J.A.8
Grimwood, J.9
Gundlach, H.10
Haberer, G.11
Hollister, J.D.12
Ossowski, S.13
Ottilar, R.P.14
Salamov, A.A.15
Schneeberger, K.16
Spannagl, M.17
Wang, X.18
Yang, L.19
Nasrallah, M.E.20
Bergelson, J.21
Carrington, J.C.22
Gaut, B.S.23
Schmutz, J.24
Mayer, K.F.X.25
de Peer, Y.V.26
Grigoriev, I.V.27
Nordborg, M.28
Weigel, D.29
Guo, Y.L.30
more..
-
23
-
-
0002038824
-
Evaluation the browning potential of peaches [cultivar screening]
-
Kader AA, Chordas A (1984) Evaluation the browning potential of peaches [cultivar screening]. Calif Agric 38(3-4): 14-15.
-
(1984)
Calif Agric
, vol.38
, Issue.3-4
, pp. 14-15
-
-
Kader, A.A.1
Chordas, A.2
-
24
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide-sequences
-
Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide-sequences. J Mol Evol 16(2): 111-120.
-
(1980)
J Mol Evol
, vol.16
, Issue.2
, pp. 111-120
-
-
Kimura, M.1
-
25
-
-
69949122158
-
VarScan: variant detection in massively parallel sequencing of individual and pooled samples
-
doi:10.1093/Bioinformatics/Btp373
-
Koboldt DC, Chen K, Wylie T, Larson DE, McLellan MD, Mardis ER, Weinstock GM, Wilson RK, Ding L (2009) VarScan: variant detection in massively parallel sequencing of individual and pooled samples. Bioinformatics 25(17): 2283-2285. doi: 10. 1093/Bioinformatics/Btp373.
-
(2009)
Bioinformatics
, vol.25
, Issue.17
, pp. 2283-2285
-
-
Koboldt, D.C.1
Chen, K.2
Wylie, T.3
Larson, D.E.4
McLellan, M.D.5
Mardis, E.R.6
Weinstock, G.M.7
Wilson, R.K.8
Ding, L.9
-
26
-
-
79952698482
-
Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)
-
doi: 10. 1186/1471-2164-12-150
-
Kraus RHS, Kerstens HHD, van Hooft P, Crooijmans RPMA, van der Poel JJ, Elmberg J, Vignal A, Huang YH, Li N, Prins HHT, Groenen MAM (2011) Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos). BMC Genomics 12. doi: 10. 1186/1471-2164-12-150.
-
(2011)
BMC Genomics
, vol.12
-
-
Kraus, R.H.S.1
Kerstens, H.H.D.2
van Hooft, P.3
Crooijmans, R.P.M.A.4
van der Poel, J.J.5
Elmberg, J.6
Vignal, A.7
Huang, Y.H.8
Li, N.9
Prins, H.H.T.10
Groenen, M.A.M.11
-
27
-
-
77951732634
-
Identification of genes associated with bud dormancy release in Prunus persica by suppression subtractive hybridization
-
Leida C, Terol J, Martc G, Agustc M, LlcLcer G, Badenes ML, Rcos G (2010) Identification of genes associated with bud dormancy release in Prunus persica by suppression subtractive hybridization. Tree Physiol 30(5): 655-666.
-
(2010)
Tree Physiol
, vol.30
, Issue.5
, pp. 655-666
-
-
Leida, C.1
Terol, J.2
Martc, G.3
Agustc, M.4
LlcLcer, G.5
Badenes, M.L.6
Rcos, G.7
-
28
-
-
80052594616
-
Genome-wide analysis of the RING finger gene family in apple
-
doi:10.1007/S00438-011-0625-0
-
Li YZ, Wu BJ, Yu YL, Yang GD, Wu CG, Zheng CC (2011) Genome-wide analysis of the RING finger gene family in apple. Mol Genet Genomics 286(1): 81-94. doi: 10. 1007/S00438-011-0625-0.
-
(2011)
Mol Genet Genomics
, vol.286
, Issue.1
, pp. 81-94
-
-
Li, Y.Z.1
Wu, B.J.2
Yu, Y.L.3
Yang, G.D.4
Wu, C.G.5
Zheng, C.C.6
-
29
-
-
67649873095
-
Sequence and expression analysis of the C3HC4-type RING finger gene family in rice
-
doi:10.1016/J.Gene.2009.05.018
-
Ma K, Mao JH, Li XH, Zhang QF, Lian XM (2009) Sequence and expression analysis of the C3HC4-type RING finger gene family in rice. Gene 444(1-2): 33-45. doi: 10. 1016/J. Gene. 2009. 05. 018.
-
(2009)
Gene
, vol.444
, Issue.1-2
, pp. 33-45
-
-
Ma, K.1
Mao, J.H.2
Li, X.H.3
Zhang, Q.F.4
Lian, X.M.5
-
30
-
-
67651108806
-
The genetics of quantitative traits: challenges and prospects
-
doi:10.1038/Nrg2612
-
Mackay TFC, Stone EA, Ayroles JF (2009) The genetics of quantitative traits: challenges and prospects. Nat Rev Genet 10(8): 565-577. doi: 10. 1038/Nrg2612.
-
(2009)
Nat Rev Genet
, vol.10
, Issue.8
, pp. 565-577
-
-
Mackay, T.F.C.1
Stone, E.A.2
Ayroles, J.F.3
-
31
-
-
84872672684
-
High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.)
-
doi: 10. 1007/s11295-012-0522-7
-
Martínez-García PJ, Parfitt D, Ogundiwin E, Fass J, Chan H, Ahmad R, Lurie S, Dandekar A, Gradziel T, Crisosto C (2012a) High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.). Tree Genet Genomes 1-18. doi: 10. 1007/s11295-012-0522-7.
-
(2012)
Tree Genet Genomes
, pp. 1-18
-
-
Martínez-García, P.J.1
Parfitt, D.2
Ogundiwin, E.3
Fass, J.4
Chan, H.5
Ahmad, R.6
Lurie, S.7
Dandekar, A.8
Gradziel, T.9
Crisosto, C.10
-
32
-
-
84859612082
-
Influence of year and genetic factors on chilling injury susceptibility in peach (Prunus persica (L.) Batsch)
-
Martínez-García PJ, Cameron P, Parfitt D, Ogundiwin E, Fresnedo-Ramírez J, Dandekar A, Gradziel T, Crisosto C (2012b) Influence of year and genetic factors on chilling injury susceptibility in peach (Prunus persica (L.) Batsch). Euphytica 185(2): 267-280.
-
(2012)
Euphytica
, vol.185
, Issue.2
, pp. 267-280
-
-
Martínez-García, P.J.1
Cameron, P.2
Parfitt, D.3
Ogundiwin, E.4
Fresnedo-Ramírez, J.5
Dandekar, A.6
Gradziel, T.7
Crisosto, C.8
-
33
-
-
33644772171
-
Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition
-
doi:10.1534/Genetics.105.049916
-
Morton BR, Bi IV, McMullen MD, Gaut BS (2006) Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition. Genetics 172(1): 569-577. doi: 10. 1534/Genetics. 105. 049916.
-
(2006)
Genetics
, vol.172
, Issue.1
, pp. 569-577
-
-
Morton, B.R.1
Bi, I.V.2
McMullen, M.D.3
Gaut, B.S.4
-
34
-
-
53249109367
-
Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit
-
doi:10.1007/S11103-008-9378-5
-
Ogundiwin EA, Marti C, Forment J, Pons C, Granell A, Gradziel TM, Peace CP, Crisosto CH (2008) Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit. Plant Mol Biol 68(4-5): 379-397. doi: 10. 1007/S11103-008-9378-5.
-
(2008)
Plant Mol Biol
, vol.68
, Issue.4-5
, pp. 379-397
-
-
Ogundiwin, E.A.1
Marti, C.2
Forment, J.3
Pons, C.4
Granell, A.5
Gradziel, T.M.6
Peace, C.P.7
Crisosto, C.H.8
-
35
-
-
73449083763
-
A fruit quality gene map of Prunus
-
doi: 10. 1186/1471-2164-10-587
-
Ogundiwin EA, Peace CP, Gradziel TM, Parfitt DE, Bliss FA, Crisosto CH (2009) A fruit quality gene map of Prunus. BMC Genomics 10. doi: 10. 1186/1471-2164-10-587.
-
(2009)
BMC Genomics
, vol.10
-
-
Ogundiwin, E.A.1
Peace, C.P.2
Gradziel, T.M.3
Parfitt, D.E.4
Bliss, F.A.5
Crisosto, C.H.6
-
36
-
-
0033015046
-
Mining SNPs from EST databases
-
Picoult-Newberg L, Ideker TE, Pohl MG, Taylor SL, Donaldson MA, Nickerson DA, Boyce-Jacino M (1999) Mining SNPs from EST databases. Genome Res 9(2): 167-174.
-
(1999)
Genome Res
, vol.9
, Issue.2
, pp. 167-174
-
-
Picoult-Newberg, L.1
Ideker, T.E.2
Pohl, M.G.3
Taylor, S.L.4
Donaldson, M.A.5
Nickerson, D.A.6
Boyce-Jacino, M.7
-
37
-
-
8444234949
-
Effect of drought and rewatering on the metabolism of Lupinus albus organs
-
doi:10.1016/J.Jplph.2004.01.016
-
Pinheiro C, Passarinho JA, Ricardo CP (2004) Effect of drought and rewatering on the metabolism of Lupinus albus organs. J Plant Physiol 161(11): 1203-1210. doi: 10. 1016/J. Jplph. 2004. 01. 016.
-
(2004)
J Plant Physiol
, vol.161
, Issue.11
, pp. 1203-1210
-
-
Pinheiro, C.1
Passarinho, J.A.2
Ricardo, C.P.3
-
38
-
-
14844338302
-
Correlation between molecular markers and adaptively significant genetic variation in Bromus tectorum (Poaceae) an inbreeding annual grass
-
Ramakrishnan AP, Meyer SE, Waters J, Stevens MR, Coleman CE, Fairbanks DJ (2004) Correlation between molecular markers and adaptively significant genetic variation in Bromus tectorum (Poaceae) an inbreeding annual grass. Am J Bot 91(6): 797-803.
-
(2004)
Am J Bot
, vol.91
, Issue.6
, pp. 797-803
-
-
Ramakrishnan, A.P.1
Meyer, S.E.2
Waters, J.3
Stevens, M.R.4
Coleman, C.E.5
Fairbanks, D.J.6
-
39
-
-
33748672451
-
SNPeffect v.20: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs
-
doi:10.1093/Bioinformatics/Btl348
-
Reumers J, Maurer-Stroh S, Schymkowitz J, Rousseau F (2006) SNPeffect v. 20: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs. Bioinformatics 22(17): 2183-2185. doi: 10. 1093/Bioinformatics/Btl348.
-
(2006)
Bioinformatics
, vol.22
, Issue.17
, pp. 2183-2185
-
-
Reumers, J.1
Maurer-Stroh, S.2
Schymkowitz, J.3
Rousseau, F.4
-
40
-
-
0034649582
-
Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana
-
Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Blöcker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell LA, Mache R, Puigdomènech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Quétier F, Schäfer M, Müller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, Löhnert TH, Nordsiek G, Reichelt J, Scharfe M, Schön O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenwälder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse AC, Alcaraz JP, Cottet A, Casacuberta E, Monfort A, Argiriou A, Flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes HW, Mayer KF, Kaul S, Town CD, Koo HL, Tallon LJ, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii CY, Shea TP, Creasy TH, Haas B, Maiti R, Wu D, Peterson J, van Aken S, Pai G, Militscher J, Sellers P, Gill JE, Feldblyum TV, Preuss D, Lin X, Nierman WC, Salzberg SL, White O, Venter JC, Fraser CM, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S (2000) Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Nature 408(6814): 820-823.
-
(2000)
Nature
, vol.408
, Issue.6814
, pp. 820-823
-
-
Salanoubat, M.1
Lemcke, K.2
Rieger, M.3
Ansorge, W.4
Unseld, M.5
Fartmann, B.6
Valle, G.7
Blöcker, H.8
Perez-Alonso, M.9
Obermaier, B.10
Delseny, M.11
Boutry, M.12
Grivell, L.A.13
Mache, R.14
Puigdomènech, P.15
De Simone, V.16
Choisne, N.17
Artiguenave, F.18
Robert, C.19
Brottier, P.20
Wincker, P.21
Cattolico, L.22
Weissenbach, J.23
Saurin, W.24
Quétier, F.25
Schäfer, M.26
Müller-Auer, S.27
Gabel, C.28
Fuchs, M.29
Benes, V.30
Wurmbach, E.31
Drzonek, H.32
Erfle, H.33
Jordan, N.34
Bangert, S.35
Wiedelmann, R.36
Kranz, H.37
Voss, H.38
Holland, R.39
Brandt, P.40
Nyakatura, G.41
Vezzi, A.42
D'Angelo, M.43
Pallavicini, A.44
Toppo, S.45
Simionati, B.46
Conrad, A.47
Hornischer, K.48
Kauer, G.49
Löhnert, T.H.50
Nordsiek, G.51
Reichelt, J.52
Scharfe, M.53
Schön, O.54
Bargues, M.55
Terol, J.56
Climent, J.57
Navarro, P.58
Collado, C.59
Perez-Perez, A.60
Ottenwälder, B.61
Duchemin, D.62
Cooke, R.63
Laudie, M.64
Berger-Llauro, C.65
Purnelle, B.66
Masuy, D.67
de Haan, M.68
Maarse, A.C.69
Alcaraz, J.P.70
Cottet, A.71
Casacuberta, E.72
Monfort, A.73
Argiriou, A.74
Flores, M.75
Liguori, R.76
Vitale, D.77
Mannhaupt, G.78
Haase, D.79
Schoof, H.80
Rudd, S.81
Zaccaria, P.82
Mewes, H.W.83
Mayer, K.F.84
Kaul, S.85
Town, C.D.86
Koo, H.L.87
Tallon, L.J.88
Jenkins, J.89
Rooney, T.90
Rizzo, M.91
Walts, A.92
Utterback, T.93
Fujii, C.Y.94
Shea, T.P.95
Creasy, T.H.96
Haas, B.97
more..
-
41
-
-
0031707062
-
The paleontology of intergene retrotransposons of maize
-
SanMiguel P, Gaut BS, Tikhonov A, Nakajima Y, Bennetzen JL (1998) The paleontology of intergene retrotransposons of maize. Nat Genet 20(1): 43-45.
-
(1998)
Nat Genet
, vol.20
, Issue.1
, pp. 43-45
-
-
SanMiguel, P.1
Gaut, B.S.2
Tikhonov, A.3
Nakajima, Y.4
Bennetzen, J.L.5
-
42
-
-
0035173378
-
dbSNP: the NCBI database of genetic variation
-
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29(1): 308-311.
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.1
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
Smigielski, E.M.6
Sirotkin, K.7
-
43
-
-
3042686794
-
A comparison of methods for estimating the transition: transversion ratio from DNA sequences
-
doi:10.1016/J.Ympev.2004.01.013
-
Strandberg AKK, Salter LA (2004) A comparison of methods for estimating the transition: transversion ratio from DNA sequences. Mol Phylogenet Evol 32(2): 495-503. doi: 10. 1016/J. Ympev. 2004. 01. 013.
-
(2004)
Mol Phylogenet Evol
, vol.32
, Issue.2
, pp. 495-503
-
-
Strandberg, A.K.K.1
Salter, L.A.2
-
44
-
-
70350463618
-
Isolation and functional characterization of cold-regulated promoters, by digitally identifying peach fruit cold-induced genes from a large EST dataset
-
doi: 10. 1186/1471-2229-9-121
-
Tittarelli A, Santiago M, Morales A, Meisel LA, Silva H (2009) Isolation and functional characterization of cold-regulated promoters, by digitally identifying peach fruit cold-induced genes from a large EST dataset. BMC Plant Biol 9. doi: 10. 1186/1471-2229-9-121.
-
(2009)
BMC Plant Biol
, vol.9
-
-
Tittarelli, A.1
Santiago, M.2
Morales, A.3
Meisel, L.A.4
Silva, H.5
-
45
-
-
0036889096
-
Biodiversity assessment using markers for ecologically important traits
-
van Tienderen PH, de Haan AA, van der Linden CG, Vosman B (2002) Biodiversity assessment using markers for ecologically important traits. Trends Ecol Evol 17(12): 577-582.
-
(2002)
Trends Ecol Evol
, vol.17
, Issue.12
, pp. 577-582
-
-
van Tienderen, P.H.1
de Haan, A.A.2
van der Linden, C.G.3
Vosman, B.4
-
46
-
-
84860015620
-
Development and evaluation of a 9 K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm
-
doi:10.1371/journal.pone.0035668
-
Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, Wilhelm L, Troggio M, Sosinski B, Aranzana MJ, Arus P, Iezzoni A, Morgante M, Peace C (2012) Development and evaluation of a 9 K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm. PLoS ONE 7(4): e35668. doi: 10. 1371/journal. pone. 0035668.
-
(2012)
PLoS ONE
, vol.7
, Issue.4
-
-
Verde, I.1
Bassil, N.2
Scalabrin, S.3
Gilmore, B.4
Lawley, C.T.5
Gasic, K.6
Micheletti, D.7
Rosyara, U.R.8
Cattonaro, F.9
Vendramin, E.10
Main, D.11
Aramini, V.12
Blas, A.L.13
Mockler, T.C.14
Bryant, D.W.15
Wilhelm, L.16
Troggio, M.17
Sosinski, B.18
Aranzana, M.J.19
Arus, P.20
Iezzoni, A.21
Morgante, M.22
Peace, C.23
more..
-
47
-
-
0035983148
-
A review on SNP and other types of molecular markers and their use in animal genetics
-
doi:10.1051/Gse:2002009
-
Vignal A, Milan D, SanCristobal M, Eggen A (2002) A review on SNP and other types of molecular markers and their use in animal genetics. Genet Sel Evol 34(3): 275-305. doi: 10. 1051/Gse: 2002009.
-
(2002)
Genet Sel Evol
, vol.34
, Issue.3
, pp. 275-305
-
-
Vignal, A.1
Milan, D.2
SanCristobal, M.3
Eggen, A.4
-
48
-
-
33845186134
-
Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution
-
doi:10.1073/Pnas.0605618103
-
Vitte C, Bennetzen JL (2006) Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution. Proc Natl Acad Sci USA 103(47): 17638-17643. doi: 10. 1073/Pnas. 0605618103.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.47
, pp. 17638-17643
-
-
Vitte, C.1
Bennetzen, J.L.2
-
49
-
-
0001062055
-
The excess of transitions among nucleotide substitutions: new methods of estimating transition bias underscore its significance
-
doi:10.1016/0169-5347(96)10009-4
-
Wakeley J (1996) The excess of transitions among nucleotide substitutions: new methods of estimating transition bias underscore its significance. Trends Ecol Evol 11(4): 158-163. doi: 10. 1016/0169-5347(96)10009-4.
-
(1996)
Trends Ecol Evol
, vol.11
, Issue.4
, pp. 158-163
-
-
Wakeley, J.1
-
50
-
-
0032524383
-
Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
-
Wang DG, Fan JB, Siao CJ, Berno A, Young P, Sapolsky R, Ghandour G, Perkins N, Winchester E, Spencer J, Kruglyak L, Stein L, Hsie L, Topaloglou T, Hubbell E, Robinson E, Mittmann M, Morris MS, Shen NP, Kilburn D, Rioux J, Nusbaum C, Rozen S, Hudson TJ, Lipshutz R, Chee M, Lander ES (1998) Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280(5366): 1077-1082.
-
(1998)
Science
, vol.280
, Issue.5366
, pp. 1077-1082
-
-
Wang, D.G.1
Fan, J.B.2
Siao, C.J.3
Berno, A.4
Young, P.5
Sapolsky, R.6
Ghandour, G.7
Perkins, N.8
Winchester, E.9
Spencer, J.10
Kruglyak, L.11
Stein, L.12
Hsie, L.13
Topaloglou, T.14
Hubbell, E.15
Robinson, E.16
Mittmann, M.17
Morris, M.S.18
Shen, N.P.19
Kilburn, D.20
Rioux, J.21
Nusbaum, C.22
Rozen, S.23
Hudson, T.J.24
Lipshutz, R.25
Chee, M.26
Lander, E.S.27
more..
-
51
-
-
79951707329
-
Invited review: quantitative trait nucleotide determination in the era of genomic selection
-
doi:10.3168/jds.2010-3793
-
Weller JI, Ron M (2011) Invited review: quantitative trait nucleotide determination in the era of genomic selection. J Dairy Sci 94(3): 1082-1090. doi: 10. 3168/jds. 2010-3793.
-
(2011)
J Dairy Sci
, vol.94
, Issue.3
, pp. 1082-1090
-
-
Weller, J.I.1
Ron, M.2
-
52
-
-
34347360759
-
Unravelling enzymatic discoloration in potato through a combined approach of candidate genes, QTL, and expression analysis
-
doi:10.1007/S00122-007-0560-Y
-
Werij JS, Kloosterman B, Celis-Gamboa C, de Vos CHR, America T, Visser RGF, Bachem CWB (2007) Unravelling enzymatic discoloration in potato through a combined approach of candidate genes, QTL, and expression analysis. Theor Appl Genet 115(2): 245-252. doi: 10. 1007/S00122-007-0560-Y.
-
(2007)
Theor Appl Genet
, vol.115
, Issue.2
, pp. 245-252
-
-
Werij, J.S.1
Kloosterman, B.2
Celis-Gamboa, C.3
de Vos, C.H.R.4
America, T.5
Visser, R.G.F.6
Bachem, C.W.B.7
-
53
-
-
78249266582
-
Identification of putative stage-specific grapevine berry biomarkers and omics data integration into networks
-
doi:10.1104/Pp.110.160275
-
Zamboni A, Di Carli M, Guzzo F, Stocchero M, Zenoni S, Ferrarini A, Tononi P, Toffali K, Desiderio A, Lilley KS, Pe ME, Benvenuto E, Delledonne M, Pezzotti M (2010) Identification of putative stage-specific grapevine berry biomarkers and omics data integration into networks. Plant Physiol 154(3): 1439-1459. doi: 10. 1104/Pp. 110. 160275.
-
(2010)
Plant Physiol
, vol.154
, Issue.3
, pp. 1439-1459
-
-
Zamboni, A.1
Di Carli, M.2
Guzzo, F.3
Stocchero, M.4
Zenoni, S.5
Ferrarini, A.6
Tononi, P.7
Toffali, K.8
Desiderio, A.9
Lilley, K.S.10
Pe, M.E.11
Benvenuto, E.12
Delledonne, M.13
Pezzotti, M.14
-
54
-
-
33644530676
-
Role of ABA in integrating plant responses to drought and salt stresses
-
doi:10.1016/j.fcr.2005.08.018
-
Zhang J, Jia W, Yang J, Ismail AM (2006) Role of ABA in integrating plant responses to drought and salt stresses. Field Crop Res 97(1): 111-119. doi: 10. 1016/j. fcr. 2005. 08. 018.
-
(2006)
Field Crop Res
, vol.97
, Issue.1
, pp. 111-119
-
-
Zhang, J.1
Jia, W.2
Yang, J.3
Ismail, A.M.4
|