Correlation between molecular markers and adaptively significant genetic variation in Bromus tectorum (Poaceae), an inbreeding annual grass

American Journal of Botany

Volumn 91, Issue 6, 2004, Pages 797-803

  Ramakrishnan, Alisa P ^a,b   Meyer, Susan E ^a   Waters, Jennifer ^b   Stevens, Mikel R ^b   Coleman, Craig E ^b   Fairbanks, Daniel J ^b  

^a USDA FOREST SERVICE   (United States)

^b BRIGHAM YOUNG UNIVERSITY   (United States)

Author keywords

AFLP; Bromus tectorum; Cheatgrass; Genetic variation; Microsatellite; Molecular marker; Phenotypic variation; SSR

Indexed keywords

GENETIC MARKER; GENETIC VARIATION; GRASS; PHENOTYPE;

NORTH AMERICA; UNITED STATES;

BROMUS; BROMUS TECTORUM; POACEAE; USTILAGO; USTILAGO BULLATA;

EID: 14844338302     PISSN: 00029122     EISSN: 00029122     Source Type: Journal    
DOI: 10.3732/ajb.91.6.797     Document Type: Article

References (43)

1. BOTELLA, M. A., J. E. PARKER, L. N. FROST, P. D. BITTNER-EDDY, J. L. BEYNON, M. J. DANIELS, E. B. HOLUB, AND J. D. G. JONES. 1998. Three genes of the Arabidopsis RPP1 complex resistance locus recognize distinct Peronospora parasitica determinants. Plant Cell 10: 1847-1860.
2. BULT, C., M. KALLERSO, AND S. YOUNGBAE. 1992. Amplification and sequencing of 16/18S rDNA from gel-purified total plant DNA. Plant Molecular Biology Reporter-ISPMB 10: 273-284.
3. DICE, L. R. 1945. Measures of the amount of ecologic association between species. Ecology 26: 297-302.
4. EXCOFFIER, L., P. SMOUSE, AND J. QUATTRO. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
5. FORD-LLOYD, B. V., H. J. NEWBURY, M. T. JACKSON, AND P. S. VIRK. 2001. Genetic basis for co-adaptive gene complexes in rice (Oryza sativa L.) landraces. Heredity 87: 530-536.
6. GOLDING, G. B., AND C. STROBECK. 1980. Linkage disequilibrium in a finite population that is partially selfing. Genetics 94: 777-789.
7. GREEN, J. M., J. H. A. BARKER, E. J. P. MARSHALL, R. J. FROUD-WILLIAMS, N. C. B. PETERS, G. M. ARNOLD, K. DAWSON, AND A. KARP. 2001. Microsatellite analysis of the inbreeding grass weed Barren Brome (Anisantha sterilis) reveals genetic diversity at the within- and between-farm scales. Molecular Ecology 10: 1035-1045.
8. HEDRICK, P. W., AND L. HOLDEN. 1979. Hitch-hiking: an alternative to coadaptation for the barley and slender wild oat examples. Heredity 43: 79-86.
9. HAMRICK, J. L. 1989. Isozymes and the analysis of genetic structure in plant populations. In D. E. Soltis and P. S. Soltis [eds.], Isozymes in plant biology, vol. 4, 87-105. Dioscorides Press, Portland, Oregon, USA.
10. HAMRICK, J. L., M. J. W. GODT, D. A. MURAWSKI, AND M. D. LOVELESS. 1991. Correlations between species traits and allozyme diversity: implications for conservation biology. In D. A. Falk and K. E. Holsinger [eds.], Genetics and conservation of rare plants. Oxford University Press, New York, New York, USA.
11. HAMRICK, J. L., Y. B. LINHART, AND J. B. MITTON. 1979. Relationships between life history characteristics and electrophoretically detectable genetic variation in plants. Annual Review of Ecology and Systematics 10: 173-200.
12. KNAPP, E. E., AND K. J. RICE. 1998. Comparison of isozymes and quantitative traits for evaluating patterns of genetic variation in purple needlegrass (Nassella pulchra). Conservation Biology 12: 1031-1041.
13. LERCETEAU, E., AND A. E. SZMIDT. 1999. Properties of AFLP markers in inheritance and genetic diversity studies of Pinus sylvestris L. Heredity 82: 252-260.
14. LYNCH, M. 1990. The similarity index and DNA fingerprinting. Molecular Biology and Evolution 7: 478-484.
15. MACK, R. N. 1981. Invasion of Bromus tectorum L. into western North America: an ecological chronicle. Agro-Ecosystems 7: 145-165.
16. MAGUIRE, T. L., R. PEAKALL, AND P. SAENGER. 2002. Comparative analysis of genetic diversity in the mangrove species Avicennia marina (Forsk.) Vierh. (Avicenniaceae) detected by AFLPs and SSRs. Theoretical and Applied Genetics 104: 388-398.
17. MANTEL, N. A. 1967. The detection of disease clustering and a generalized regression approach. Cancer Research 27: 209-220.
18. MARIETTE, S., D. CHAGNE, C. LEZIER, P. PASTUSKA, A. RAFFIN, C. PLOMION, AND A. KREMER. 2001. Genetic diversity within and among Pinus pinaster populations: comparison between AFLP and microsatellite markers. Heredity 86: 469-479.
19. MARIETTE, S., V. LE CORRE, F. AUSTERLITZ, AND A. KREMER. 2002. Sampling within the genome for measuring within-population diversity: trade-offs between markers. Molecular Ecology 11: 1145-1156.
20. MCKONE, M. K. 1985. Reproductive biology of several bromegrasses (Bromus): breeding system, pattern of fruit maturation, and seed set. American Journal of Botany 72: 1334-1339.
21. MEYER, S. E., AND P. S. ALLEN. 1999. Ecological genetics of seed germination regulation in Bromus tectorum L. I. Phenotypic variance among and within populations. Oecologia 120: 27-34.
22. MEYER, S. E., P. S. ALLEN, AND J. BECKSTEAD. 1997. Seed germination regulation in Bromus tectorum (Poaceae) and its ecological significance. Oikos 78: 475-485.
23. MEYER, S. E., D. L. NELSON, AND S. CARLSON. In press. Ecological genetics of vernalization response in Bromus tectorum L. (Poaceae). Annals of Botany.
24. MEYER, S. E., D. L. NELSON, AND S. CLEMENT. 2001. Evidence for resistance polymorphism in the Bromus tectorum-Ustilago bullata pathosystem: implications for biocontrol. Canadian Journal of Plant Pathology 23: 19-27.
25. NEI, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York, New York, USA.
26. NEI, M., AND W. H. LI. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, USA 76: 5269-5273.
27. NOVAK, S. J., AND R. N. MACK. 2001. Tracing plant introduction and spread: genetic evidence from Bromus tectorum (cheatgrass). BioScience 51: 114-122.
28. NOVAK, S. J., R. N. MACK, AND D. E. SOLTIS. 1991. Genetic variation in Bromus tectorum (Poaceae): population differentiation in its North American range. American Journal Botany 78: 1150-1161.
29. O'HANLON, P. C., R. PEAKALL, AND D. T. BRIESE. 2000. A review of new PCR-based genetic markers and their utility to weed ecology. Weed Research 40: 239-254.
30. PEJIC, I., P. AJMONE-MARSAN, M. MORGANTE, V. KOZUMPLICK, P. CASTIGLIONI, G. TARAMINO, AND M. MOTTO. 1998. Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs and AFLPs. Theoretical and Applied Genetics 97: 1248-1255.
31. PILLEN, K., A. BINDER, B. KREUZKAM, L. RAMSAY, R.WAUGH, J. FORSTER, AND J. LEON. 2000. Mapping new EMBL-derived barley microsatellites and their use in differentiating German barley cultivars. Theoretical and Applied Genetics 101: 652-660.
32. QUINN, G. P., AND M. J. KEOUGH. 2002. Experimental design and data analysis for biologists. Cambridge University Press, New York, New York, USA.
33. RAMAKRISHNAN, A. P., C. E. COLEMAN, S. E.MEYER, AND D. J. FAIRBANKS. 2002. Microsatellite markers for Bromus tectorum (cheatgrass). Molecular Ecology Notes 2: 22-23.
34. RICE, K. J., AND R. N. MACK. 1991. Ecological genetics of Bromus tectorum I. A hierarchical analysis of phenotypic variation. Oecologia 88: 77-83.
35. SCHNEIDER, S., D. ROESSLI, AND L. EXCOFFIER. 2000. Arlequin: a software for population genetics data analysis, version 2.0. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland.
36. SNEATH, P. H. A., AND R. R. SOKAL. 1973. Numerical taxonomy: the principles and practice of numerical classification. W. H. Freeman, San Francisco, California, USA.
37. STEINGER, T., P. HALDIMANN, K. A. LEISS, AND H. MULLER-SCHARER. 2002. Does natural selection promote population divergence? A comparative analysis of population structure using amplified fragment length polymorphism markers and quantitative traits. Molecular Ecology 11: 2583-2590.
38. TEULAT, B., C. ALDAM, R. TREHIN, P. LEBRUN, J. H. A. BARKER, G. M. ARNOLD, A. KARP, L. BAUDOUIN, AND F. ROGNON. 2000. An analysis of genetic diversity in coconut (Cocos nucifera) populations from across the geographic range using sequence-tagged microsatellites (SSRs) and AFLPs. Theoretical and Applied Genetics 100: 764-771.
39. THUILLET, A., D. BRU, J. DAVID, P. ROUMET, S. SANTONI, P. SOURDILLE, AND T. BATAILLON. 2002. Direct estimation of mutation rate for 10 microsatellite loci in durum wheat, Triticum turgidum (L.) Thell. ssp. durum desf. Molecular Biology and Evolution 19: 122-125.
40. n microsatellite loci in chickpea (Cicer arietinum L.). Molecular Genetics and Genomics 265: 1097-1103.
41. VIRK, P., B. V. FORD-LLOYD, M. T. JACKSON, AND H. J. NEWBURY. 1996. Predicting quantitative variation within rice germplasm using molecular markers. Heredity 76: 296-304.
42. VIRK, P., H. J. NEWBURY, M. T. JACKSON, AND B. V. FORD-LLOYD. 2000. Are mapped markers more useful for assessing genetic diversity? Theoretical and Applied Genetics 100: 607-613.
43. VOS, P., R. HOGERS, M. BLEEKER, M. REIJANS, T. VAN DE LEE, M. HORNES, A. FRIJTERS, J. POT, J. PELEMAN, M. KUIPER, AND M. ZABEAU. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.