메뉴 건너뛰기




Volumn 444, Issue 1-2, 2009, Pages 33-45

Sequence and expression analysis of the C3HC4-type RING finger gene family in rice

Author keywords

C3HC4 type RING finger; cis Element; Hormone; Microarray; Oryza sativa; Stress

Indexed keywords

CIS ACTING ELEMENT; RING FINGER PROTEIN; RING FINGER PROTEIN C3HC4; UNCLASSIFIED DRUG;

EID: 67649873095     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2009.05.018     Document Type: Article
Times cited : (64)

References (52)
  • 1
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey T.L., and Elkan C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2 (1994) 28-36
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 2
    • 57649097190 scopus 로고    scopus 로고
    • Effects of brassinosteroids on the plant responses to environmental stresses
    • Bajguz A., and Hayat S. Effects of brassinosteroids on the plant responses to environmental stresses. Plant Physiol. Biochem. 47 (2009) 1-8
    • (2009) Plant Physiol. Biochem. , vol.47 , pp. 1-8
    • Bajguz, A.1    Hayat, S.2
  • 3
    • 37349121787 scopus 로고    scopus 로고
    • Jasmonate signalling network in Arabidopsis thaliana: crucial regulatory nodes and new physiological scenarios
    • Balbi V., and Devoto A. Jasmonate signalling network in Arabidopsis thaliana: crucial regulatory nodes and new physiological scenarios. New Phytol. 177 (2008) 301-318
    • (2008) New Phytol. , vol.177 , pp. 301-318
    • Balbi, V.1    Devoto, A.2
  • 4
    • 0036144763 scopus 로고    scopus 로고
    • Regulatory functions of ubiquitination in the immune system
    • Ben-Neriah Y. Regulatory functions of ubiquitination in the immune system. Nat. Immunol. 3 (2002) 20-26
    • (2002) Nat. Immunol. , vol.3 , pp. 20-26
    • Ben-Neriah, Y.1
  • 5
    • 0029866646 scopus 로고    scopus 로고
    • The galvanization of biology: a growing appreciation for the roles of zinc
    • Berg J.M., and Shi Y. The galvanization of biology: a growing appreciation for the roles of zinc. Science 271 (1996) 1081-1085
    • (1996) Science , vol.271 , pp. 1081-1085
    • Berg, J.M.1    Shi, Y.2
  • 6
    • 0029977716 scopus 로고    scopus 로고
    • The RING finger domain: a recent example of a sequence-structure family
    • Borden K.L., and Freemont P.S. The RING finger domain: a recent example of a sequence-structure family. Curr. Opin. Struct. Biol. 6 (1996) 395-401
    • (1996) Curr. Opin. Struct. Biol. , vol.6 , pp. 395-401
    • Borden, K.L.1    Freemont, P.S.2
  • 8
    • 40049099687 scopus 로고    scopus 로고
    • Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana
    • Cheung M.Y., et al. Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana. J. Exp. Bot. 58 (2007) 4147-4159
    • (2007) J. Exp. Bot. , vol.58 , pp. 4147-4159
    • Cheung, M.Y.1
  • 9
    • 0032535483 scopus 로고    scopus 로고
    • The ubiquitin-proteasome pathway: on protein death and cell life
    • Ciechanover A. The ubiquitin-proteasome pathway: on protein death and cell life. EMBO J. 17 (1998) 7151-7160
    • (1998) EMBO J. , vol.17 , pp. 7151-7160
    • Ciechanover, A.1
  • 10
    • 34250897234 scopus 로고    scopus 로고
    • Ubiquitin, hormones and biotic stress in plants
    • Dreher K., and Callis J. Ubiquitin, hormones and biotic stress in plants. Ann. Bot. (Lond.) 99 (2007) 787-822
    • (2007) Ann. Bot. (Lond.) , vol.99 , pp. 787-822
    • Dreher, K.1    Callis, J.2
  • 11
    • 26844479820 scopus 로고    scopus 로고
    • The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development
    • Fan J., Quan S., Orth T., Awai C., Chory J., and Hu J. The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development. Plant Physiol. 139 (2005) 231-239
    • (2005) Plant Physiol. , vol.139 , pp. 231-239
    • Fan, J.1    Quan, S.2    Orth, T.3    Awai, C.4    Chory, J.5    Hu, J.6
  • 12
    • 0027239790 scopus 로고
    • The RING finger. A novel protein sequence motif related to the zinc finger
    • Freemont P.S. The RING finger. A novel protein sequence motif related to the zinc finger. Ann. N. Y. Acad. Sci. 684 (1993) 174-192
    • (1993) Ann. N. Y. Acad. Sci. , vol.684 , pp. 174-192
    • Freemont, P.S.1
  • 13
    • 54449091448 scopus 로고    scopus 로고
    • GSDS: a gene structure display server
    • Guo A.Y., Zhu Q.H., Chen X., and Luo J.C. GSDS: a gene structure display server. YiChuan 29 (2007) 1023-1026
    • (2007) YiChuan , vol.29 , pp. 1023-1026
    • Guo, A.Y.1    Zhu, Q.H.2    Chen, X.3    Luo, J.C.4
  • 14
    • 0036015059 scopus 로고    scopus 로고
    • Biochemical evidence for ubiquitin ligase activity of the Arabidopsis COP1 interacting protein 8 (CIP8)
    • Hardtke C.S., Okamoto H., Stoop-Myer C., and Deng X.W. Biochemical evidence for ubiquitin ligase activity of the Arabidopsis COP1 interacting protein 8 (CIP8). Plant J. 30 (2002) 385-394
    • (2002) Plant J. , vol.30 , pp. 385-394
    • Hardtke, C.S.1    Okamoto, H.2    Stoop-Myer, C.3    Deng, X.W.4
  • 16
    • 0032918558 scopus 로고    scopus 로고
    • Plant cis-acting regulatory DNA elements (PLACE) database: 1999
    • Higo K., Ugawa Y., Iwamoto M., and Korenaga T. Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res. 27 (1999) 297-300
    • (1999) Nucleic Acids Res. , vol.27 , pp. 297-300
    • Higo, K.1    Ugawa, Y.2    Iwamoto, M.3    Korenaga, T.4
  • 17
    • 0028907874 scopus 로고
    • A family of proteins structurally and functionally related to the E6-AP ubiquitin-protein ligase
    • Huibregtse J.M., Scheffner M., Beaudenon S., and Howley P.M. A family of proteins structurally and functionally related to the E6-AP ubiquitin-protein ligase. Proc. Natl. Acad. Sci. U. S. A. 92 (1995) 5249
    • (1995) Proc. Natl. Acad. Sci. U. S. A. , vol.92 , pp. 5249
    • Huibregtse, J.M.1    Scheffner, M.2    Beaudenon, S.3    Howley, P.M.4
  • 18
    • 0032475896 scopus 로고    scopus 로고
    • Widespread occurrence of a highly conserved RING-H2 zinc finger motif in the model plant Arabidopsis thaliana
    • Jensen R.B., Jensen K.L., Jespersen H.M., and Skriver K. Widespread occurrence of a highly conserved RING-H2 zinc finger motif in the model plant Arabidopsis thaliana. FEBS Lett. 436 (1998) 283-287
    • (1998) FEBS Lett. , vol.436 , pp. 283-287
    • Jensen, R.B.1    Jensen, K.L.2    Jespersen, H.M.3    Skriver, K.4
  • 19
    • 0034266806 scopus 로고    scopus 로고
    • RING finger proteins: mediators of ubiquitin ligase activity
    • Joazeiro C.A., and Weissman A.M. RING finger proteins: mediators of ubiquitin ligase activity. Cell 102 (2000) 549-552
    • (2000) Cell , vol.102 , pp. 549-552
    • Joazeiro, C.A.1    Weissman, A.M.2
  • 20
    • 0035312840 scopus 로고    scopus 로고
    • The Arabidopsis HOS1 gene negatively regulates cold signal transduction and encodes a RING finger protein that displays cold-regulated nucleo-cytoplasmic partitioning
    • Lee H., Xiong L., Gong Z., Ishitani M., Stevenson B., and Zhu J.K. The Arabidopsis HOS1 gene negatively regulates cold signal transduction and encodes a RING finger protein that displays cold-regulated nucleo-cytoplasmic partitioning. Genes Dev. 15 (2001) 912-924
    • (2001) Genes Dev. , vol.15 , pp. 912-924
    • Lee, H.1    Xiong, L.2    Gong, Z.3    Ishitani, M.4    Stevenson, B.5    Zhu, J.K.6
  • 21
    • 34548025086 scopus 로고    scopus 로고
    • Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice
    • Liu K., et al. Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in rice. Planta 226 (2007) 1007-1016
    • (2007) Planta , vol.226 , pp. 1007-1016
    • Liu, K.1
  • 22
    • 34250620427 scopus 로고    scopus 로고
    • The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy
    • Liu Y., Koornneef M., and Soppe W.J. The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy. Plant Cell 19 (2007) 433-444
    • (2007) Plant Cell , vol.19 , pp. 433-444
    • Liu, Y.1    Koornneef, M.2    Soppe, W.J.3
  • 23
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(- Delta Delta C(T)) method
    • Livak K.J., and Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(- Delta Delta C(T)) method. Methods 25 (2001) 402-408
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 25
    • 0027394788 scopus 로고
    • Identification and preliminary characterization of a protein motif related to the zinc finger
    • Lovering R., et al. Identification and preliminary characterization of a protein motif related to the zinc finger. Proc. Natl. Acad. Sci. U. S. A. 90 (1993) 2112-2116
    • (1993) Proc. Natl. Acad. Sci. U. S. A. , vol.90 , pp. 2112-2116
    • Lovering, R.1
  • 26
    • 23044513879 scopus 로고    scopus 로고
    • Ethylene-mediated cross-talk between calcium-dependent protein kinase and MAPK signaling controls stress responses in plants
    • Ludwig A.A., et al. Ethylene-mediated cross-talk between calcium-dependent protein kinase and MAPK signaling controls stress responses in plants. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 10736-10741
    • (2005) Proc. Natl. Acad. Sci. U. S. A. , vol.102 , pp. 10736-10741
    • Ludwig, A.A.1
  • 27
    • 0034989296 scopus 로고    scopus 로고
    • Rma1, a novel type of RING finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase
    • Matsuda N., Suzuki T., Tanaka K., and Nakano A. Rma1, a novel type of RING finger protein conserved from Arabidopsis to human, is a membrane-bound ubiquitin ligase. J. Cell Sci. 114 (2001) 1949-1957
    • (2001) J. Cell Sci. , vol.114 , pp. 1949-1957
    • Matsuda, N.1    Suzuki, T.2    Tanaka, K.3    Nakano, A.4
  • 28
    • 0033783631 scopus 로고    scopus 로고
    • Several features of the GT-factor trihelix domain resemble those of the Myb DNA-binding domain
    • Nagano Y. Several features of the GT-factor trihelix domain resemble those of the Myb DNA-binding domain. Plant Physiol. 124 (2000) 491-494
    • (2000) Plant Physiol. , vol.124 , pp. 491-494
    • Nagano, Y.1
  • 29
    • 20444402692 scopus 로고    scopus 로고
    • Abscisic acid biosynthesis and catabolism
    • Nambara E., and Marion-Poll A. Abscisic acid biosynthesis and catabolism. Annu. Rev. Plant. Biol. 56 (2005) 165-185
    • (2005) Annu. Rev. Plant. Biol. , vol.56 , pp. 165-185
    • Nambara, E.1    Marion-Poll, A.2
  • 30
    • 0038372522 scopus 로고    scopus 로고
    • Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses
    • Narusaka Y., et al. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J. 34 (2003) 137-148
    • (2003) Plant J. , vol.34 , pp. 137-148
    • Narusaka, Y.1
  • 31
    • 11144232974 scopus 로고    scopus 로고
    • The ubiquitin ligase XBAT32 regulates lateral root development in Arabidopsis
    • Nodzon L.A., Xu W.H., Wang Y., Pi L.Y., Chakrabarty P.K., and Song W.Y. The ubiquitin ligase XBAT32 regulates lateral root development in Arabidopsis. Plant J. 40 (2004) 996-1006
    • (2004) Plant J. , vol.40 , pp. 996-1006
    • Nodzon, L.A.1    Xu, W.H.2    Wang, Y.3    Pi, L.Y.4    Chakrabarty, P.K.5    Song, W.Y.6
  • 32
    • 4444225070 scopus 로고    scopus 로고
    • Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor
    • Park H.C., et al. Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor. Plant Physiol. 135 (2004) 2150-2161
    • (2004) Plant Physiol. , vol.135 , pp. 2150-2161
    • Park, H.C.1
  • 33
    • 0030890267 scopus 로고    scopus 로고
    • Extragenic suppressors of the Arabidopsis det1 mutant identify elements of flowering-time and light-response regulatory pathways
    • Pepper A.E., and Chory J. Extragenic suppressors of the Arabidopsis det1 mutant identify elements of flowering-time and light-response regulatory pathways. Genetics 145 (1997) 1125-1137
    • (1997) Genetics , vol.145 , pp. 1125-1137
    • Pepper, A.E.1    Chory, J.2
  • 35
    • 0035958076 scopus 로고    scopus 로고
    • Isolation and molecular characterization of the COP1 gene homolog from rice, Oryza sativa L. subsp. Indica var. Pusa Basmati 1
    • Raghuvanshi S., Kelkar A., Khurana J.P., and Tyagi A.K. Isolation and molecular characterization of the COP1 gene homolog from rice, Oryza sativa L. subsp. Indica var. Pusa Basmati 1. DNA Res. 8 (2001) 73-79
    • (2001) DNA Res. , vol.8 , pp. 73-79
    • Raghuvanshi, S.1    Kelkar, A.2    Khurana, J.P.3    Tyagi, A.K.4
  • 36
    • 0041421192 scopus 로고    scopus 로고
    • AthPEX10, a nuclear gene essential for peroxisome and storage organelle formation during Arabidopsis embryogenesis
    • Schumann U., Wanner G., Veenhuis M., Schmid M., and Gietl C. AthPEX10, a nuclear gene essential for peroxisome and storage organelle formation during Arabidopsis embryogenesis. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 9626-9631
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 9626-9631
    • Schumann, U.1    Wanner, G.2    Veenhuis, M.3    Schmid, M.4    Gietl, C.5
  • 37
    • 19044378214 scopus 로고    scopus 로고
    • Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray
    • Seki M., et al. Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray. Funct. Integr. Genomics 2 (2002) 282-291
    • (2002) Funct. Integr. Genomics , vol.2 , pp. 282-291
    • Seki, M.1
  • 38
    • 0036679053 scopus 로고    scopus 로고
    • Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
    • Seki M., et al. Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J. 31 (2002) 279-292
    • (2002) Plant J. , vol.31 , pp. 279-292
    • Seki, M.1
  • 39
    • 0030300175 scopus 로고    scopus 로고
    • Ca2+-dependent protein kinases and stress signal transduction in plants
    • Sheen J. Ca2+-dependent protein kinases and stress signal transduction in plants. Science 274 (1996) 1900-1902
    • (1996) Science , vol.274 , pp. 1900-1902
    • Sheen, J.1
  • 40
    • 0034028259 scopus 로고    scopus 로고
    • Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways
    • Shinozaki K., and Yamaguchi-Shinozaki K. Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways. Curr. Opin. Plant Biol. 3 (2000) 217-223
    • (2000) Curr. Opin. Plant Biol. , vol.3 , pp. 217-223
    • Shinozaki, K.1    Yamaguchi-Shinozaki, K.2
  • 41
    • 0032497260 scopus 로고    scopus 로고
    • An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression
    • Shinwari Z.K., et al. An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression. Biochem. Biophys. Res. Commun. 250 (1998) 161-170
    • (1998) Biochem. Biophys. Res. Commun. , vol.250 , pp. 161-170
    • Shinwari, Z.K.1
  • 42
    • 3242665372 scopus 로고    scopus 로고
    • The ubiquitin 26S proteasome proteolytic pathway
    • Smalle J., and Vierstra R.D. The ubiquitin 26S proteasome proteolytic pathway. Annu. Rev. Plant Biol. 55 (2004) 555-590
    • (2004) Annu. Rev. Plant Biol. , vol.55 , pp. 555-590
    • Smalle, J.1    Vierstra, R.D.2
  • 43
    • 0344530352 scopus 로고    scopus 로고
    • PRT1 of Arabidopsis is a ubiquitin protein ligase of the plant N-end rule pathway with specificity for aromatic amino-terminal residues
    • Stary S., Yin X.J., Potuschak T., Schlogelhofer P., Nizhynska V., and Bachmair A. PRT1 of Arabidopsis is a ubiquitin protein ligase of the plant N-end rule pathway with specificity for aromatic amino-terminal residues. Plant Physiol. 133 (2003) 1360-1366
    • (2003) Plant Physiol. , vol.133 , pp. 1360-1366
    • Stary, S.1    Yin, X.J.2    Potuschak, T.3    Schlogelhofer, P.4    Nizhynska, V.5    Bachmair, A.6
  • 44
    • 35649009346 scopus 로고    scopus 로고
    • Ubiquitin ligases mediate growth and development by promoting protein death
    • Stone S.L., and Callis J. Ubiquitin ligases mediate growth and development by promoting protein death. Curr. Opin. Plant Biol. 10 (2007) 624-632
    • (2007) Curr. Opin. Plant Biol. , vol.10 , pp. 624-632
    • Stone, S.L.1    Callis, J.2
  • 46
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 47
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 48
    • 0035090171 scopus 로고    scopus 로고
    • Phytochrome-mediated control of COP1 gene expression in rice plants
    • Tsuge T., et al. Phytochrome-mediated control of COP1 gene expression in rice plants. Mol. Genet. Genomics 265 (2001) 43-50
    • (2001) Mol. Genet. Genomics , vol.265 , pp. 43-50
    • Tsuge, T.1
  • 49
    • 0027220882 scopus 로고
    • Ring finger motif of Arabidopsis thaliana COP1 defines a new class of zinc-binding domain
    • von Arnim A.G., and Deng X.W. Ring finger motif of Arabidopsis thaliana COP1 defines a new class of zinc-binding domain. J. Biol. Chem. 268 (1993) 19626-19631
    • (1993) J. Biol. Chem. , vol.268 , pp. 19626-19631
    • von Arnim, A.G.1    Deng, X.W.2
  • 50
    • 33947504480 scopus 로고    scopus 로고
    • Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance
    • Wang Y.S., et al. Rice XA21 binding protein 3 is a ubiquitin ligase required for full Xa21-mediated disease resistance. Plant Cell 18 (2006) 3635-3646
    • (2006) Plant Cell , vol.18 , pp. 3635-3646
    • Wang, Y.S.1
  • 51
    • 44949108257 scopus 로고    scopus 로고
    • Gibberellin metabolism and its regulation
    • Yamaguchi S. Gibberellin metabolism and its regulation. Annu. Rev. Plant Biol. 59 (2008) 225-251
    • (2008) Annu. Rev. Plant Biol. , vol.59 , pp. 225-251
    • Yamaguchi, S.1
  • 52
    • 34547339361 scopus 로고    scopus 로고
    • SDIR1 is a RING finger E3 ligase that positively regulates stress-responsive abscisic acid signaling in Arabidopsis
    • Zhang Y., et al. SDIR1 is a RING finger E3 ligase that positively regulates stress-responsive abscisic acid signaling in Arabidopsis. Plant Cell 19 (2007) 1912-1929
    • (2007) Plant Cell , vol.19 , pp. 1912-1929
    • Zhang, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.