-
1
-
-
84858374665
-
The amyloid state of proteins in human diseases
-
Eisenberg D, Jucker M (2012) The amyloid state of proteins in human diseases. Cell 148(6):1188-1203.
-
(2012)
Cell
, vol.148
, Issue.6
, pp. 1188-1203
-
-
Eisenberg, D.1
Jucker, M.2
-
2
-
-
33746377894
-
Protein misfolding, functional amyloid, and human disease
-
Chiti F, Dobson CM (2006) Protein misfolding, functional amyloid, and human disease. Annu Rev Biochem 75:333-366.
-
(2006)
Annu Rev Biochem
, vol.75
, pp. 333-366
-
-
Chiti, F.1
Dobson, C.M.2
-
3
-
-
84863987464
-
Inhibition of amyloid formation
-
Härd T, Lendel C (2012) Inhibition of amyloid formation. J Mol Biol 421(4-5):441-465.
-
(2012)
J Mol Biol
, vol.421
, Issue.4-5
, pp. 441-465
-
-
Härd, T.1
Lendel, C.2
-
4
-
-
79959887638
-
A diversity of assembly mechanisms of a generic amyloid fold
-
Eichner T, Radford SE (2011) A diversity of assembly mechanisms of a generic amyloid fold. Mol Cell 43(1):8-18.
-
(2011)
Mol Cell
, vol.43
, Issue.1
, pp. 8-18
-
-
Eichner, T.1
Radford, S.E.2
-
5
-
-
84860377014
-
Selective molecular recognition in amyloid growth and transmission and cross-species barriers
-
Ma B, Nussinov R (2012) Selective molecular recognition in amyloid growth and transmission and cross-species barriers. J Mol Biol 421(2-3):172-184.
-
(2012)
J Mol Biol
, vol.421
, Issue.2-3
, pp. 172-184
-
-
Ma, B.1
Nussinov, R.2
-
6
-
-
77951271571
-
Principles governing oligomer formation in amyloidogenic peptides
-
Straub JE, Thirumalai D (2010) Principles governing oligomer formation in amyloidogenic peptides. Curr Opin Struct Biol 20(2):187-195.
-
(2010)
Curr Opin Struct Biol
, vol.20
, Issue.2
, pp. 187-195
-
-
Straub, J.E.1
Thirumalai, D.2
-
7
-
-
57649148788
-
Structural classification of toxic amyloid oligomers
-
Glabe CG (2008) Structural classification of toxic amyloid oligomers. J Biol Chem 283(44):29639-29643.
-
(2008)
J Biol Chem
, vol.283
, Issue.44
, pp. 29639-29643
-
-
Glabe, C.G.1
-
8
-
-
79953245314
-
Amyloid structure: Conformational diversity and consequences
-
Toyama BH, Weissman JS (2011) Amyloid structure: Conformational diversity and consequences. Annu Rev Biochem 80:557-585.
-
(2011)
Annu Rev Biochem
, vol.80
, pp. 557-585
-
-
Toyama, B.H.1
Weissman, J.S.2
-
9
-
-
67650809307
-
Functional amyloids as natural storage of peptide hormones in pituitary secretory granules
-
Maji SK, et al. (2009) Functional amyloids as natural storage of peptide hormones in pituitary secretory granules. Science 325(5938):328-332.
-
(2009)
Science
, vol.325
, Issue.5938
, pp. 328-332
-
-
Maji, S.K.1
-
10
-
-
34249290108
-
Atomic structures of amyloid cross-beta spines reveal varied steric zippers
-
Sawaya MR, et al. (2007) Atomic structures of amyloid cross-beta spines reveal varied steric zippers. Nature 447(7143):453-457.
-
(2007)
Nature
, vol.447
, Issue.7143
, pp. 453-457
-
-
Sawaya, M.R.1
-
11
-
-
57649128935
-
Fibrils with parallel in-register structure constitute a major class of amyloid fibrils: Molecular insights from electron paramagnetic resonance spectroscopy
-
Margittai M, Langen R (2008) Fibrils with parallel in-register structure constitute a major class of amyloid fibrils: Molecular insights from electron paramagnetic resonance spectroscopy. Q Rev Biophys 41(3-4):265-297.
-
(2008)
Q Rev Biophys
, vol.41
, Issue.3-4
, pp. 265-297
-
-
Margittai, M.1
Langen, R.2
-
12
-
-
28444442999
-
3D structure of Alzheimer's amyloid-beta(1-42) fibrils
-
Lührs T, et al. (2005) 3D structure of Alzheimer's amyloid-beta(1-42) fibrils. Proc Natl Acad Sci USA 102(48):17342-17347.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.48
, pp. 17342-17347
-
-
Lührs, T.1
-
13
-
-
0031592945
-
Common core structure of amyloid fi brils by synchrotron X-ray diffraction
-
Sunde M, et al. (1997) Common core structure of amyloid fi brils by synchrotron X-ray diffraction. J Mol Biol 273(3):729-739.
-
(1997)
J Mol Biol
, vol.273
, Issue.3
, pp. 729-739
-
-
Sunde, M.1
-
14
-
-
33746784978
-
Analysis of amyloid fibril structure by scanning cysteine mutagenesis
-
Shivaprasad S, Wetzel R (2006) Analysis of amyloid fibril structure by scanning cysteine mutagenesis. Methods Enzymol 413:182-198.
-
(2006)
Methods Enzymol
, vol.413
, pp. 182-198
-
-
Shivaprasad, S.1
Wetzel, R.2
-
15
-
-
0032506114
-
Propagating structure of Alzheimer's beta-amyloid(10-35) is parallel beta-sheet with residues in exact register
-
Benzinger TL, et al. (1998) Propagating structure of Alzheimer's beta-amyloid(10-35) is parallel beta-sheet with residues in exact register. Proc Natl Acad Sci USA 95(23):13407-13412.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, Issue.23
, pp. 13407-13412
-
-
Benzinger, T.L.1
-
16
-
-
79953765150
-
Solid-state NMR studies of amyloid fibril structure
-
Tycko R (2011) Solid-state NMR studies of amyloid fibril structure. Annu Rev Phys Chem 62:279-299.
-
(2011)
Annu Rev Phys Chem
, vol.62
, pp. 279-299
-
-
Tycko, R.1
-
17
-
-
77952305367
-
Beta arcades: Recurring motifs in naturally occurring and disease-related amyloid fibrils
-
Kajava AV, Baxa U, Steven AC (2010) Beta arcades: Recurring motifs in naturally occurring and disease-related amyloid fibrils. FASEB J 24(5):1311-1319.
-
(2010)
FASEB J
, vol.24
, Issue.5
, pp. 1311-1319
-
-
Kajava, A.V.1
Baxa, U.2
Steven, A.C.3
-
18
-
-
84858663186
-
Antiparallel β-sheet architecture in Iowa-mutant β-amyloid fibrils
-
Qiang W, Yau WM, Luo Y, Mattson MP, Tycko R (2012) Antiparallel β-sheet architecture in Iowa-mutant β-amyloid fibrils. Proc Natl Acad Sci USA 109(12):4443-4448.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.12
, pp. 4443-4448
-
-
Qiang, W.1
Yau, W.M.2
Luo, Y.3
Mattson, M.P.4
Tycko, R.5
-
19
-
-
84860390157
-
In vivo and in vitro analyses of toxic mutants of HET-s: FTIR antiparallel signature correlates with amyloid toxicity
-
Berthelot K, Ta HP, Géan J, Lecomte S, Cullin C (2011) In vivo and in vitro analyses of toxic mutants of HET-s: FTIR antiparallel signature correlates with amyloid toxicity. J Mol Biol 412(1):137-152.
-
(2011)
J Mol Biol
, vol.412
, Issue.1
, pp. 137-152
-
-
Berthelot, K.1
Ta, H.P.2
Géan, J.3
Lecomte, S.4
Cullin, C.5
-
20
-
-
3943084181
-
Emerging principles of conformation-based prion inheritance
-
Chien P, Weissman JS, DePace AH (2004) Emerging principles of conformation-based prion inheritance. Annu Rev Biochem 73:617-656.
-
(2004)
Annu Rev Biochem
, vol.73
, pp. 617-656
-
-
Chien, P.1
Weissman, J.S.2
DePace, A.H.3
-
21
-
-
75349097530
-
A causative link between the structure of aberrant protein oligomers and their toxicity
-
Campioni S, et al. (2010) A causative link between the structure of aberrant protein oligomers and their toxicity. Nat Chem Biol 6(2):140-147.
-
(2010)
Nat Chem Biol
, vol.6
, Issue.2
, pp. 140-147
-
-
Campioni, S.1
-
22
-
-
12244249201
-
Self-propagating, molecular-level polymorphism in Alzheimer's beta amyloid fibrils
-
Petkova AT, et al. (2005) Self-propagating, molecular-level polymorphism in Alzheimer's beta amyloid fibrils. Science 307(5707):262-265.
-
(2005)
Science
, vol.307
, Issue.5707
, pp. 262-265
-
-
Petkova, A.T.1
-
23
-
-
33847662852
-
Soluble protein oligomers in neurodegeneration: Lessons from the Alzheimer's amyloid beta-peptide
-
Haass C, Selkoe DJ (2007) Soluble protein oligomers in neurodegeneration: Lessons from the Alzheimer's amyloid beta-peptide. Nat Rev Mol Cell Biol 8(2):101-112.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, Issue.2
, pp. 101-112
-
-
Haass, C.1
Selkoe, D.J.2
-
24
-
-
33846160381
-
Polymorphism in the intermediates and products of amyloid assembly
-
Kodali R, Wetzel R (2007) Polymorphism in the intermediates and products of amyloid assembly. Curr Opin Struct Biol 17(1):48-57.
-
(2007)
Curr Opin Struct Biol
, vol.17
, Issue.1
, pp. 48-57
-
-
Kodali, R.1
Wetzel, R.2
-
25
-
-
77952324067
-
Low molecular weight oligomers of amyloid peptides display beta-barrel conformations: A replica exchange molecular dynamics study in explicit solvent
-
De Simone A, Derreumaux P (2010) Low molecular weight oligomers of amyloid peptides display beta-barrel conformations: A replica exchange molecular dynamics study in explicit solvent. J Chem Phys 132(16):165103.
-
(2010)
J Chem Phys
, vol.132
, Issue.16
, pp. 165103
-
-
De Simone, A.1
Derreumaux, P.2
-
26
-
-
78649529340
-
β-Barrel topology of Alzheimer's β-amyloid ion channels
-
Jang H, et al. (2010) β-Barrel topology of Alzheimer's β-amyloid ion channels. J Mol Biol 404(5):917-934.
-
(2010)
J Mol Biol
, vol.404
, Issue.5
, pp. 917-934
-
-
Jang, H.1
-
27
-
-
69249239132
-
Antiparallel beta-sheet: A signature structure of the oligomeric amyloid beta-peptide
-
Cerf E, et al. (2009) Antiparallel beta-sheet: A signature structure of the oligomeric amyloid beta-peptide. Biochem J 421(3):415-423.
-
(2009)
Biochem J
, vol.421
, Issue.3
, pp. 415-423
-
-
Cerf, E.1
-
28
-
-
84861206757
-
Toxic fibrillar oligomers of amyloid-β have cross-β structure
-
Stroud JC, Liu C, Teng PK, Eisenberg D (2012) Toxic fibrillar oligomers of amyloid-β have cross-β structure. Proc Natl Acad Sci USA 109(20):7717-7722.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.20
, pp. 7717-7722
-
-
Stroud, J.C.1
Liu, C.2
Teng, P.K.3
Eisenberg, D.4
-
29
-
-
67650325176
-
The interplay of catalysis and toxicity by amyloid intermediates on lipid bilayers: Insights from type II diabetes
-
Hebda JA, Miranker AD (2009) The interplay of catalysis and toxicity by amyloid intermediates on lipid bilayers: Insights from type II diabetes. Annu Rev Biophys 38:125-152.
-
(2009)
Annu Rev Biophys
, vol.38
, pp. 125-152
-
-
Hebda, J.A.1
Miranker, A.D.2
-
30
-
-
77951975748
-
Structural conversion of neurotoxic amyloid-beta(1-42) oligomers to fibrils
-
Ahmed M, et al. (2010) Structural conversion of neurotoxic amyloid-beta(1-42) oligomers to fibrils. Nat Struct Mol Biol 17(5):561-567.
-
(2010)
Nat Struct Mol Biol
, vol.17
, Issue.5
, pp. 561-567
-
-
Ahmed, M.1
-
31
-
-
84863229747
-
Atomic view of a toxic amyloid small oligomer
-
Laganowsky A, et al. (2012) Atomic view of a toxic amyloid small oligomer. Science 335(6073):1228-1231.
-
(2012)
Science
, vol.335
, Issue.6073
, pp. 1228-1231
-
-
Laganowsky, A.1
-
32
-
-
78650982368
-
2-microglobulin forms three-dimensional domain-swapped amyloid fibrils with disulfide linkages
-
2-microglobulin forms three-dimensional domain-swapped amyloid fibrils with disulfide linkages. Nat Struct Mol Biol 18(1):49-55.
-
(2011)
Nat Struct Mol Biol
, vol.18
, Issue.1
, pp. 49-55
-
-
Liu, C.1
Sawaya, M.R.2
Eisenberg, D.3
-
33
-
-
67650500988
-
CHARMM: The biomolecular simulation program
-
Brooks BR, et al. (2009) CHARMM: The biomolecular simulation program. J Comput Chem 30(10):1545- 1614.
-
(2009)
J Comput Chem
, vol.30
, Issue.10
, pp. 1545-1614
-
-
Brooks, B.R.1
-
34
-
-
84867878408
-
Amyloid β-sheet mimics that antagonize protein aggregation and reduce amyloid toxicity
-
Cheng PN, Liu C, Zhao ML, Eisenberg D, Nowick JS (2012) Amyloid β-sheet mimics that antagonize protein aggregation and reduce amyloid toxicity. Nat Chem 4(11):927-933.
-
(2012)
Nat Chem
, vol.4
, Issue.11
, pp. 927-933
-
-
Cheng, P.N.1
Liu, C.2
Zhao, M.L.3
Eisenberg, D.4
Nowick, J.S.5
-
35
-
-
0037022563
-
Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation
-
Richardson JS, Richardson DC (2002) Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation. Proc Natl Acad Sci USA 99(5):2754-2759.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.5
, pp. 2754-2759
-
-
Richardson, J.S.1
Richardson, D.C.2
-
36
-
-
34247884335
-
Macrocyclic beta-sheet peptides that mimic protein quaternary structure through intermolecular beta-sheet interactions
-
Khakshoor O, Demeler B, Nowick JS (2007) Macrocyclic beta-sheet peptides that mimic protein quaternary structure through intermolecular beta-sheet interactions. J Am Chem Soc 129(17):5558-5569.
-
(2007)
J Am Chem Soc
, vol.129
, Issue.17
, pp. 5558-5569
-
-
Khakshoor, O.1
Demeler, B.2
Nowick, J.S.3
-
37
-
-
79955440719
-
Characteristics of amyloid-related oligomers revealed by crystal structures of macrocyclic β-sheet mimics
-
Liu C, et al. (2011) Characteristics of amyloid-related oligomers revealed by crystal structures of macrocyclic β-sheet mimics. J Am Chem Soc 133(17):6736-6744.
-
(2011)
J Am Chem Soc
, vol.133
, Issue.17
, pp. 6736-6744
-
-
Liu, C.1
-
38
-
-
84861563520
-
Direct observation of the interconversion of normal and toxic forms of α-synuclein
-
Cremades N, et al. (2012) Direct observation of the interconversion of normal and toxic forms of α-synuclein. Cell 149(5):1048-1059.
-
(2012)
Cell
, vol.149
, Issue.5
, pp. 1048-1059
-
-
Cremades, N.1
-
39
-
-
84859489661
-
Microcin amyloid fibrils A are reservoir of toxic oligomeric species
-
Shahnawaz M, Soto C (2012) Microcin amyloid fibrils A are reservoir of toxic oligomeric species. J Biol Chem 287(15):11665-11676.
-
(2012)
J Biol Chem
, vol.287
, Issue.15
, pp. 11665-11676
-
-
Shahnawaz, M.1
Soto, C.2
-
40
-
-
80053596817
-
Understanding the complex mechanisms of β2-microglobulin amyloid assembly
-
Eichner T, Radford SE (2011) Understanding the complex mechanisms of β2-microglobulin amyloid assembly. FEBS J 278(20):3868-3883.
-
(2011)
FEBS J
, vol.278
, Issue.20
, pp. 3868-3883
-
-
Eichner, T.1
Radford, S.E.2
-
41
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch W (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Crystsllogr 26:795-800.
-
(1993)
J Appl Crystsllogr
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
42
-
-
37549039510
-
A short history of SHELX
-
Sheldrick GM (2008) A short history of SHELX. Acta Crystallogr A 64(Pt 1):112-122.
-
(2008)
Acta Crystallogr A
, vol.64
, Issue.PART 1
, pp. 112-122
-
-
Sheldrick, G.M.1
-
43
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley P, Cowtan K (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1):2126-2132.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, Issue.PART 12 PART 1
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
44
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, et al. (2010) PHENIX: A comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66(Pt 2):213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, Issue.PART 2
, pp. 213-221
-
-
Adams, P.D.1
-
45
-
-
0034625060
-
Assembly of tau protein into Alzheimer paired helical filaments depends on a local sequence motif ((306)VQIVYK(311)) forming beta structure
-
von Bergen M, et al. (2000) Assembly of tau protein into Alzheimer paired helical filaments depends on a local sequence motif ((306)VQIVYK(311)) forming beta structure. Proc Natl Acad Sci USA 97(10):5129-5134.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.10
, pp. 5129-5134
-
-
Von Bergen, M.1
-
46
-
-
41149162020
-
Fibril growth kinetics reveal a region of beta2-microglobulin important for nucleation and elongation of aggregation
-
Platt GW, Routledge KE, Homans SW, Radford SE (2008) Fibril growth kinetics reveal a region of beta2-microglobulin important for nucleation and elongation of aggregation. J Mol Biol 378(1):251-263.
-
(2008)
J Mol Biol
, vol.378
, Issue.1
, pp. 251-263
-
-
Platt, G.W.1
Routledge, K.E.2
Homans, S.W.3
Radford, S.E.4
-
47
-
-
36749033116
-
Peptide conformation and supramolecular organization in amylin fibrils: Constraints from solid-state NMR
-
Luca S, Yau WM, Leapman R, Tycko R (2007) Peptide conformation and supramolecular organization in amylin fibrils: Constraints from solid-state NMR. Biochemistry 46(47):13505-13522.
-
(2007)
Biochemistry
, vol.46
, Issue.47
, pp. 13505-13522
-
-
Luca, S.1
Yau, W.M.2
Leapman, R.3
Tycko, R.4
-
48
-
-
47249110199
-
The fold of alpha-synuclein fibrils
-
Vilar M, et al. (2008) The fold of alpha-synuclein fibrils. Proc Natl Acad Sci USA 105(25):8637-8642.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.25
, pp. 8637-8642
-
-
Vilar, M.1
-
49
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, et al. (2007) Phaser crystallographic software. J Appl Cryst 40(Pt 4):658-674.
-
(2007)
J Appl Cryst
, vol.40
, Issue.PART 4
, pp. 658-674
-
-
McCoy, A.J.1
-
50
-
-
77957946297
-
-
Global Phasing Ltd, Cambridge, United Kingdom
-
Bricogne C, et al. (2009) Womack BUSTER, Version 2.8.0 (Global Phasing Ltd, Cambridge, United Kingdom).
-
(2009)
Womack BUSTER, Version 2.8.0
-
-
Bricogne, C.1
|