-
1
-
-
34250341823
-
A higher-level phylogenetic classification of the Fungi
-
Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, et al. (2007) A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509-547.
-
(2007)
Mycological Research
, vol.111
, pp. 509-547
-
-
Hibbett, D.S.1
Binder, M.2
Bischoff, J.F.3
Blackwell, M.4
Cannon, P.F.5
-
2
-
-
32044471897
-
Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
-
Lutzoni F, Kauff F, Cox C, McLaughlin D, Celio G, et al. (2004) Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany 91: 1446-1480.
-
(2004)
American Journal of Botany
, vol.91
, pp. 1446-1480
-
-
Lutzoni, F.1
Kauff, F.2
Cox, C.3
McLaughlin, D.4
Celio, G.5
-
3
-
-
70350340838
-
The search for the fungal tree of life
-
McLaughlin DJ, Hibbett DS, Lutzoni F, Spatafora JW, Vilgalys R, (2009) The search for the fungal tree of life. Trends in Microbiology 17: 488-497.
-
(2009)
Trends in Microbiology
, vol.17
, pp. 488-497
-
-
McLaughlin, D.J.1
Hibbett, D.S.2
Lutzoni, F.3
Spatafora, J.W.4
Vilgalys, R.5
-
4
-
-
0023501273
-
Molecular versus morphological approaches to systematics
-
Hillis DM, (1987) Molecular versus morphological approaches to systematics. Annual Review of Ecology and Systematics 18: 23-42.
-
(1987)
Annual Review of Ecology and Systematics
, vol.18
, pp. 23-42
-
-
Hillis, D.M.1
-
5
-
-
0027521074
-
Phylogenetic relationships in Drosophila: a conflict between molecular and morphological data
-
Thomas RH, Hunt JA, (1993) Phylogenetic relationships in Drosophila: a conflict between molecular and morphological data. Molecular Biology and Evolution 10: 362-374.
-
(1993)
Molecular Biology and Evolution
, vol.10
, pp. 362-374
-
-
Thomas, R.H.1
Hunt, J.A.2
-
6
-
-
84871183825
-
War of the iguanas: Conflicting phylogenies, long branch attraction, and disparate rates of molecular and morphological evolution in iguanid lizards
-
Wiens JJ, Hollingsworth BD, (2000) War of the iguanas: Conflicting phylogenies, long branch attraction, and disparate rates of molecular and morphological evolution in iguanid lizards. Systematic Biology 49: 69-85.
-
(2000)
Systematic Biology
, vol.49
, pp. 69-85
-
-
Wiens, J.J.1
Hollingsworth, B.D.2
-
7
-
-
0035065311
-
Uninformative characters and apparent conflict between molecules and morphology
-
Lee MSY, (2001) Uninformative characters and apparent conflict between molecules and morphology. Molecular Biology and Evolution 18: 676-680.
-
(2001)
Molecular Biology and Evolution
, vol.18
, pp. 676-680
-
-
Lee, M.S.Y.1
-
8
-
-
4644371451
-
The role of morphological data in phylogeny reconstruction
-
Wiens JJ, (2004) The role of morphological data in phylogeny reconstruction. Systematic Biology 53: 653-661.
-
(2004)
Systematic Biology
, vol.53
, pp. 653-661
-
-
Wiens, J.J.1
-
9
-
-
4944236506
-
A molecular phylogeny and a new classification of parmelioid lichens containing Xanthoparmelia-type lichenan (Ascomycota: Lecanorales)
-
Blanco O, Crespo A, Elix JA, Hawksworth DL, Lumbsch HT, (2004) A molecular phylogeny and a new classification of parmelioid lichens containing Xanthoparmelia-type lichenan (Ascomycota: Lecanorales). Taxon 53: 959-975.
-
(2004)
Taxon
, vol.53
, pp. 959-975
-
-
Blanco, O.1
Crespo, A.2
Elix, J.A.3
Hawksworth, D.L.4
Lumbsch, H.T.5
-
10
-
-
36048965323
-
After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century
-
Hibbett DS, (2007) After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century. Mycological Research 111: 1001-1018.
-
(2007)
Mycological Research
, vol.111
, pp. 1001-1018
-
-
Hibbett, D.S.1
-
11
-
-
36049014495
-
Whatever happened to the pyrenomycetes and loculoascomycetes?
-
Lumbsch HT, Huhndorf SM, (2007) Whatever happened to the pyrenomycetes and loculoascomycetes? Mycological Research 111: 1064-1074.
-
(2007)
Mycological Research
, vol.111
, pp. 1064-1074
-
-
Lumbsch, H.T.1
Huhndorf, S.M.2
-
12
-
-
0031059425
-
Convergent evolution in invertebrates
-
Moore J, Willmer P, (1997) Convergent evolution in invertebrates. Biological Reviews 72: 1-60.
-
(1997)
Biological Reviews
, vol.72
, pp. 1-60
-
-
Moore, J.1
Willmer, P.2
-
15
-
-
79958827857
-
Parallel evolution and phenotypic divergence in lichenized fungi: a case study in the lichen-forming fungal family Graphidaceae (Ascomycota: Lecanoromycetes: Ostropales)
-
Rivas Plata E, Lumbsch HT, (2011) Parallel evolution and phenotypic divergence in lichenized fungi: a case study in the lichen-forming fungal family Graphidaceae (Ascomycota: Lecanoromycetes: Ostropales). Molecular Phylogenetics and Evolution 61: 45-63.
-
(2011)
Molecular Phylogenetics and Evolution
, vol.61
, pp. 45-63
-
-
Rivas, P.E.1
Lumbsch, H.T.2
-
16
-
-
33745028707
-
-
Sunderland: Sinauer Associates
-
Futuyama DJ (2005) Evolution. Sunderland: Sinauer Associates.
-
(2005)
Evolution
-
-
Futuyama, D.J.1
-
18
-
-
25444453808
-
Taxonomy and phylogeny of the xerophilic genus Wallemia (Wallemiomycetes and Wallemiales, cl. et ord. nov.)
-
Zalar P, de Hoog GS, Schroers HJ, Frank JM, Gunde-Cimerman N, (2005) Taxonomy and phylogeny of the xerophilic genus Wallemia (Wallemiomycetes and Wallemiales, cl. et ord. nov.). Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology 87: 311-328.
-
(2005)
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology
, vol.87
, pp. 311-328
-
-
Zalar, P.1
de Hoog, G.S.2
Schroers, H.J.3
Frank, J.M.4
Gunde-Cimerman, N.5
-
19
-
-
36348989587
-
Phylogeny of the genus Lophozia (Dumort.) Dumort. s. str. inferred from nuclear and chloroplast sequences ITS1-2 and TRNL-F
-
Vilnet AA, Milyutina IA, Konstantinova NA, Ignatov MS, Troitsky AV, (2007) Phylogeny of the genus Lophozia (Dumort.) Dumort. s. str. inferred from nuclear and chloroplast sequences ITS1-2 and TRNL-F. Russian Journal of Genetics 43: 1306-1313.
-
(2007)
Russian Journal of Genetics
, vol.43
, pp. 1306-1313
-
-
Vilnet, A.A.1
Milyutina, I.A.2
Konstantinova, N.A.3
Ignatov, M.S.4
Troitsky, A.V.5
-
20
-
-
79960419942
-
The tangled taxonomic history of Dictyococcus, Bracteacoccus and Pseudomuriella (Chlorophyceae, Chlorophyta) and their distinction based on a phylogenetic perspective
-
Fucikova K, Rada JC, Lewis LA, (2011) The tangled taxonomic history of Dictyococcus, Bracteacoccus and Pseudomuriella (Chlorophyceae, Chlorophyta) and their distinction based on a phylogenetic perspective. Phycologia 50: 422-429.
-
(2011)
Phycologia
, vol.50
, pp. 422-429
-
-
Fucikova, K.1
Rada, J.C.2
Lewis, L.A.3
-
21
-
-
84871248524
-
Unravelling the taxonomic knot of Bracteacoccus, Dictyococcus, Pseudomuriella, and Chromochloris (Chlorophyceae, Chlorophyta): A case of cryptic genera
-
Fucikova K, Lewis LA, (2011) Unravelling the taxonomic knot of Bracteacoccus, Dictyococcus, Pseudomuriella, and Chromochloris (Chlorophyceae, Chlorophyta): A case of cryptic genera. Journal of Phycology 47: S39-S39.
-
(2011)
Journal of Phycology
, vol.47
-
-
Fucikova, K.1
Lewis, L.A.2
-
22
-
-
6944255373
-
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
-
Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W, (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 101: 14812-14817.
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, pp. 14812-14817
-
-
Hebert, P.D.N.1
Penton, E.H.2
Burns, J.M.3
Janzen, D.H.4
Hallwachs, W.5
-
23
-
-
33847041452
-
Cryptic species as a window on diversity and conservation
-
Bickford D, Lohman DJ, Sodhi NS, Ng PKL, Meier R, et al. (2007) Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution 22: 148-155.
-
(2007)
Trends in Ecology & Evolution
, vol.22
, pp. 148-155
-
-
Bickford, D.1
Lohman, D.J.2
Sodhi, N.S.3
Ng, P.K.L.4
Meier, R.5
-
24
-
-
44049083411
-
DNA barcodes and cryptic species of skipper butterflies in the genus Perichares in Area de Conservacion Guanacaste, Costa Rica
-
Burns JM, Janzen DH, Hajibabaei M, Hallwachs W, Hebert PDN, (2008) DNA barcodes and cryptic species of skipper butterflies in the genus Perichares in Area de Conservacion Guanacaste, Costa Rica. Proceedings of the National Academy of Sciences of the United States of America 105: 6350-6355.
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, pp. 6350-6355
-
-
Burns, J.M.1
Janzen, D.H.2
Hajibabaei, M.3
Hallwachs, W.4
Hebert, P.D.N.5
-
25
-
-
77953550760
-
Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters
-
Crespo A, Perez-Ortega S, (2009) Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters. Anales del Jardín Botánico de Madrid 66: 71-81.
-
(2009)
Anales Del Jardín Botánico De Madrid
, vol.66
, pp. 71-81
-
-
Crespo, A.1
Perez-Ortega, S.2
-
26
-
-
67650489940
-
Cryptic species in ants (Hymenoptera: Formicidae) revisited: we need a change in the alpha-taxonomic approach
-
Seifert B, (2009) Cryptic species in ants (Hymenoptera: Formicidae) revisited: we need a change in the alpha-taxonomic approach. Myrmecological News 12: 149-166.
-
(2009)
Myrmecological News
, vol.12
, pp. 149-166
-
-
Seifert, B.1
-
27
-
-
67649216782
-
Cryptic species diversity should not be trivialised
-
Trontelj P, Fiser C, (2009) Cryptic species diversity should not be trivialised. Systematics and Biodiversity 7: 1-3.
-
(2009)
Systematics and Biodiversity
, vol.7
, pp. 1-3
-
-
Trontelj, P.1
Fiser, C.2
-
28
-
-
80755183248
-
Cryptic species in lichen-forming fungi
-
Crespo A, Lumbsch HT, (2010) Cryptic species in lichen-forming fungi. IMA Fungus 1: 167-170.
-
(2010)
IMA Fungus
, vol.1
, pp. 167-170
-
-
Crespo, A.1
Lumbsch, H.T.2
-
32
-
-
80054923596
-
Morphology-based phylogenetic binning of the lichen genera Graphis and Allographa (Ascomycota: Graphidaceae) using molecular site weight calibration
-
Berger SA, Stamatakis A, Lücking R, (2011) Morphology-based phylogenetic binning of the lichen genera Graphis and Allographa (Ascomycota: Graphidaceae) using molecular site weight calibration. Taxon 60: 1450-1457.
-
(2011)
Taxon
, vol.60
, pp. 1450-1457
-
-
Berger, S.A.1
Stamatakis, A.2
Lücking, R.3
-
33
-
-
84865274977
-
-
MycoKeys in press
-
Rivas Plata E, Parnmen S, Staiger B, Mangold A, Frisch A, et al. (2012) A molecular phylogeny of Graphidaceae (Ascomycota: Lecanoromycetes: Ostropales) including 437 species. MycoKeys in press.
-
(2012)
A molecular phylogeny of Graphidaceae (Ascomycota: Lecanoromycetes: Ostropales) including 437 species
-
-
Rivas, P.E.1
Parnmen, S.2
Staiger, B.3
Mangold, A.4
Frisch, A.5
-
34
-
-
84856907721
-
A new classification for the lichen family Graphidaceae s.lat. (Ascomycota: Lecanoromycetes: Ostropales)
-
Rivas-Plata E, Lücking R, Lumbsch HT, (2012) A new classification for the lichen family Graphidaceae s.lat. (Ascomycota: Lecanoromycetes: Ostropales). Fungal Diversity 52: 107-121.
-
(2012)
Fungal Diversity
, vol.52
, pp. 107-121
-
-
Rivas-Plata, E.1
Lücking, R.2
Lumbsch, H.T.3
-
35
-
-
38849120096
-
Molecular phylogeny suggests synonymy of Thelotremataceae within Graphidaceae (Ascomycota: Ostropales)
-
Mangold A, Martin MP, Lücking R, Lumbsch HT, (2008) Molecular phylogeny suggests synonymy of Thelotremataceae within Graphidaceae (Ascomycota: Ostropales). Taxon 57: 476-486.
-
(2008)
Taxon
, vol.57
, pp. 476-486
-
-
Mangold, A.1
Martin, M.P.2
Lücking, R.3
Lumbsch, H.T.4
-
36
-
-
78650924548
-
Phylogenetic position of the foliicolous genus Chroodiscus (Ostropales, Ascomycota) inferred from nuclear and mitochondrial ribosomal DNA sequences
-
Papong K, Corush J, Mangold A, Lucking R, Lumbsch HT, (2009) Phylogenetic position of the foliicolous genus Chroodiscus (Ostropales, Ascomycota) inferred from nuclear and mitochondrial ribosomal DNA sequences. Fungal Diversity 38: 147-153.
-
(2009)
Fungal Diversity
, vol.38
, pp. 147-153
-
-
Papong, K.1
Corush, J.2
Mangold, A.3
Lucking, R.4
Lumbsch, H.T.5
-
37
-
-
33847338302
-
Contributions towards a new systematics of the lichen family Thelotremataceae
-
Frisch A, Kalb K, Grube M, (2006) Contributions towards a new systematics of the lichen family Thelotremataceae. Bibliotheca Lichenologica 92: 1-539.
-
(2006)
Bibliotheca Lichenologica
, vol.92
, pp. 1-539
-
-
Frisch, A.1
Kalb, K.2
Grube, M.3
-
38
-
-
70350299458
-
A world-wide key to the thelotremoid Graphidaceae, excluding the Ocellularia-Myriotrema-Stegobolus clade
-
Rivas Plata E, Lücking R, Sipman HJM, Mangold A, Lumbsch HT, (2010) A world-wide key to the thelotremoid Graphidaceae, excluding the Ocellularia-Myriotrema-Stegobolus clade. Lichenologist 42: 139-185.
-
(2010)
Lichenologist
, vol.42
, pp. 139-185
-
-
Rivas Plata, E.1
Lücking, R.2
Sipman, H.J.M.3
Mangold, A.4
Lumbsch, H.T.5
-
40
-
-
0344307520
-
Thallic mycelial and cytological characters in ascomycete systematics
-
In: Hawksworth DL, editor, Plenum Press, New York
-
Jahns HM, Ott S (1994) Thallic mycelial and cytological characters in ascomycete systematics. In: Hawksworth DL, editor. Ascomycete Systematics Problems and Perspectives in the Nineties: NATO Advanced Science Institutes Series, Plenum Press, New York. 57-62.
-
(1994)
Ascomycete Systematics Problems and Perspectives in the Nineties: NATO Advanced Science Institutes Series
, pp. 57-62
-
-
Jahns, H.M.1
Ott, S.2
-
41
-
-
35148836940
-
-
10th edition: CAB International, Wallingford, Oxon
-
Kirk PM, Cannon PF, David JC, Stalpers JAe (2009) Ainsworth & Bisby's Dictionary of the Fungi. 10th edition: CAB International, Wallingford, Oxon. 655 p.
-
(2009)
Ainsworth & Bisby's Dictionary of the Fungi
, pp. 655
-
-
Kirk, P.M.1
Cannon, P.F.2
David, J.C.3
Stalpers, J.A.4
-
44
-
-
77958482189
-
Ascomycetes have faster evolutionary rates and larger species diversity than basidiomycetes
-
Wang HY, Lumbsch HT, Guo SY, Huang MR, Wei JC, (2010) Ascomycetes have faster evolutionary rates and larger species diversity than basidiomycetes. Science China, Life Sciences 53: 1163-1169.
-
(2010)
Science China, Life Sciences
, vol.53
, pp. 1163-1169
-
-
Wang, H.Y.1
Lumbsch, H.T.2
Guo, S.Y.3
Huang, M.R.4
Wei, J.C.5
-
45
-
-
0842322955
-
Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA
-
Funk DJ, Omland KE, (2003) Species-level paraphyly and polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Review of Ecology Evolution and Systematics 34: 397-423.
-
(2003)
Annual Review of Ecology Evolution and Systematics
, vol.34
, pp. 397-423
-
-
Funk, D.J.1
Omland, K.E.2
-
47
-
-
57349084667
-
A new lineage of lichenized basidiomycetes inferred from a two-gene phylogeny: The Lepidostromataceae with three species from the tropics
-
Ertz D, Lawrey JD, Sikaroodi M, Gillevet PM, Fischer E, et al. (2008) A new lineage of lichenized basidiomycetes inferred from a two-gene phylogeny: The Lepidostromataceae with three species from the tropics. American Journal of Botany 95: 1548-1556.
-
(2008)
American Journal of Botany
, vol.95
, pp. 1548-1556
-
-
Ertz, D.1
Lawrey, J.D.2
Sikaroodi, M.3
Gillevet, P.M.4
Fischer, E.5
-
48
-
-
84862337804
-
Lepidostroma vilgalysii, a new basidiolichen from the New World
-
Hodkinson BP, Uehling JK, Smith ME, (2012) Lepidostroma vilgalysii, a new basidiolichen from the New World. Mycological Progress 11: 827-833.
-
(2012)
Mycological Progress
, vol.11
, pp. 827-833
-
-
Hodkinson, B.P.1
Uehling, J.K.2
Smith, M.E.3
-
49
-
-
0025374564
-
Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species
-
Vilgalys R, Hester M, (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246.
-
(1990)
Journal of Bacteriology
, vol.172
, pp. 4238-4246
-
-
Vilgalys, R.1
Hester, M.2
-
50
-
-
0032714017
-
PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes
-
Zoller S, Scheidegger C, Sperisen C, (1999) PCR primers for the amplification of mitochondrial small subunit ribosomal DNA of lichen-forming ascomycetes. Lichenologist 31: 511-516.
-
(1999)
Lichenologist
, vol.31
, pp. 511-516
-
-
Zoller, S.1
Scheidegger, C.2
Sperisen, C.3
-
51
-
-
0032750944
-
Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit
-
Liu YJ, Whelen S, Hall BD, (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Molecular Biology and Evolution 16: 1799-1808.
-
(1999)
Molecular Biology and Evolution
, vol.16
, pp. 1799-1808
-
-
Liu, Y.J.1
Whelen, S.2
Hall, B.D.3
-
52
-
-
84871228362
-
-
Drummond A, Ashton B, Buxton S, Cheung M, Cooper A, et al. (2011) Geneious v5.4. Available from http://www.geneious.com/.
-
-
-
-
53
-
-
33750403801
-
RAxML-VI-HPC: Maximum Likelihood-based Phylogenetic Analyses with Thousands of Taxa and Mixed Models
-
Stamatakis A, (2006) RAxML-VI-HPC: Maximum Likelihood-based Phylogenetic Analyses with Thousands of Taxa and Mixed Models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
55
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F, (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
56
-
-
39149141072
-
AWTY (Are We There Yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
-
Nylander JAA, Wilgenbusch JC, Warren DL, Swofford DL, (2007) AWTY (Are We There Yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24: 581-583.
-
(2007)
Bioinformatics
, vol.24
, pp. 581-583
-
-
Nylander, J.A.A.1
Wilgenbusch, J.C.2
Warren, D.L.3
Swofford, D.L.4
-
57
-
-
0030203863
-
Treeview: an application to display phylogenetic trees on personal computers
-
Page RDM, (1996) Treeview: an application to display phylogenetic trees on personal computers. Computer Applied Biosciences 12: 357-358.
-
(1996)
Computer Applied Biosciences
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
58
-
-
0001938684
-
High performance thin layer chromatography (HPTLC), an improved technique for screening lichen substances
-
Arup U, Ekman S, Lindblom L, Mattsson J-E, (1993) High performance thin layer chromatography (HPTLC), an improved technique for screening lichen substances. Lichenologist 25: 61-71.
-
(1993)
Lichenologist
, vol.25
, pp. 61-71
-
-
Arup, U.1
Ekman, S.2
Lindblom, L.3
Mattsson, J.-E.4
-
60
-
-
0036139287
-
CONSEL: for assessing the confidence of phylogenetic tree selection
-
Shimodaira H, Hasegawa M, (2001) CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246-1247.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
62
-
-
0036205377
-
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt HA, Strimmer K, Vingron M, von Haeseler A, (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
von Haeseler, A.4
|