Whatever happened to the pyrenomycetes and loculoascomycetes?

Mycological Research

Volumn 111, Issue 9, 2007, Pages 1064-1074

  Lumbsch, H Thorsten ^a   Huhndorf, Sabine M ^a  

^a FIELD MUSEUM OF NATURAL HISTORY   (United States)

Author keywords

Ascoma types; Ascomycota; Chaetothyriomycetidae; Dothideomycetes; Lecanoromycetes; Lichen forming fungi; Phylogeny; Sordariales

Indexed keywords

FUNGUS; HYPOTHESIS TESTING; LICHEN; MOLECULAR ANALYSIS; PHYLOGENETICS; TAXONOMY;

ARTICLE; ASCOMYCETES; CLASSIFICATION; CYTOLOGY; GENETICS; LICHENS; PHYLOGENY; SORDARIALES;

ASCOMYCOTA; LICHENS; PHYLOGENY; SORDARIALES;

ASCOMYCOTA; DOTHIDEOMYCETES; FUNGI; LECANOROMYCETES; LOCULOASCOMYCETES; PYRENOMYCETES; SORDARIALES; SORDARIOMYCETES;

EID: 36049014495     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2007.04.004     Document Type: Article

References (113)

1. Andersson K., Eriksson O.E., and Landvik S. Boliniaceae transferred to the Sordariales (Ascomycota). Systema Ascomycetum 14 (1995) 1-16
2. Aptroot A. A monograph of the Pyrenulaceae (excluding Anthracothecium and Pyrenula) and the Requienellaceae, with notes on the Pleomassariaceae, the Trypetheliaceae and Mycomicrothelia (lichenized and non-lichenized ascomycetes). Bibliotheca Lichenologica 44 (1991) 1-178
3. Aptroot A. Aspects of the integration of the taxonomy of lichenized and non-lichenized pyrenocarpous ascomycetes. Lichenologist 30 (1998) 501-514
4. von Arx J.A., and Müller E. A re-evaluation of the bitunicate ascomycetes with keys to families and genera. Studies in Mycology 9 (1975) 1-159
5. Barr M.E. Perspectives in the Ascomycotina. Memoirs of the New York Botanical Garden 28 (1976) 1-8
6. Barr M.E. A classification of the Loculoascomycetes. Mycologia 71 (1979) 935-957
7. Barr M.E. The ascomycete connection. Mycologia 75 (1983) 1-13
8. Barr M.E. Prodromus to Class Loculoascomycetes (1987), M. E. Barr, Amherst, MA
9. Barr M.E., and Huhndorf S.M. Loculoascomycetes. In: McLaughlin D.J., McLaughlin E.G., and Lemke P.A. (Eds). The Mycota. Part A. vol. VII. Systematics and Evolution (2000), Springer-Verlag, Berlin 283-305
10. Berbee M.L. Loculoascomycete origins and evolution of filamentous ascomycete morphology based on 18S rRNA gene sequence data. Molecular Biology and Evolution 13 (1996) 462-470
11. Berbee M.L., and Taylor J.W. Two ascomycete classes based on fruiting body characters and ribosomal DNA sequences. Molecular Biology and Evolution 9 (1992) 278-284
12. Berbee M.L., and Taylor J.W. From 18S ribosomal sequence data to evolution of morphology among the fungi. Canadian Journal of Botany 73 Suppl 1 (1995) 677-683
13. Bhattacharya D., Lutzoni F., Reeb V., Simon D., Nason J., and Fernandez F. Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes. Molecular Biology and Evolution 17 (2000) 1971-1984
14. Breuss O. Thrombium. In: Nash T.H., Ryan B.D., Gries C., and Bungartz F. (Eds). Lichen Flora of the Greater Sonoran Desert Region. Vol. 1. Lichens Unlimited (2002), Arizona State University, Tempe 483-484
15. Chen W., Shearer C.A., and Crane J.L. Phylogeny of Ophioceras spp. based on morphological and molecular data. Mycologia 91 (1999) 84-94
16. del Prado R., Schmitt I., Kautz S., Palice Z., Lücking R., and Lumbsch H.T. Morphological and molecular evidence places the Trypetheliaceae in the Dothideomycetes. Mycological Research 110 (2006) 511-520
17. Dettman J.R., Harbinski F.M., and Taylor J.W. Ascospore morphology is a poor predictor of the phylogenetic relationships of Neurospora and Gelasinospora. Fungal Genetics and Biology 34 (2001) 49-61
18. Doppelbaur A.W. Studien zur Anatomie und Entwicklungsgeschichte einiger endolithischen pyrenocarpen Flechten. Planta 53 (1960) 246-292
19. Eriksson O.E. The families of bitunicate ascomycetes. Opera Botanica 60 (1981) 1-209
20. Eriksson O.E. Outline of Ascomycota. Myconet 12 (2006) 1-82
21. Eriksson O.E., and Hawksworth D.L. Outline of the ascomycetes - 1993. Systema Ascomycetum 12 (1993) 51-257
22. Eriksson O.E., and Winka K. Supraordinal taxa of Ascomycota. Myconet 1 (1997) 1-16
23. Eriksson O.E., Baral H.O., Currah R.S., Hansen K., Kurtzman C.P., Rambold G., and Laessøe T. Outline of Ascomycota - 2001. Myconet 7 (2001) 1-88
24. Fallah P.M., Shearer C.A., and Chen W. Ascovaginospora stellipala gen. et spec. nov. from sphagnum bogs. Mycologia 89 (1997) 812-818
25. Fries E. Systema Mycologicum Vol. II (1823), E. Maritius, Lund
26. Gargas A., and Taylor J.W. Phylogeny of discomycetes and early radiations of the apothecial Ascomycotina inferred from SSU rDNA sequence data. Experimental Mycology 19 (1995) 7-15
27. Grube M., Baloch E., and Lumbsch H.T. The phylogeny of Porinaceae (Ostropomycetidae) suggests a neotenic origin of perithecia in Lecanoromycetes. Mycological Research 108 (2004) 1111-1118
28. Hafellner J., and Kalb K. Studies in Trichotheliales ordo novus. Bibliotheca Lichenologica 58 (1995) 161-186
29. Hale M.E. A revision of the lichen family Thelotremataceae in Sri Lanka. Bulletin of the British Museum (Natural History), Botany Series 8 (1981) 227-332
30. Harris RC, 1975. A taxonomic revision of the genus Arthopyrenia Massal. s.lat. (Ascomycetes) in North America. Dissertation. Michigan State University.
31. Harris R.C. The family Trypetheliaceae (Loculoascomycetes: lichenized Melanommatales) in Amazonian Brazil. Suplementum Acta Amazonica 14 (1984) 55-80
32. Harris R.C. Some Florida Lichens (1990), Privately published by author, Bronx, NY
33. Harris R.C. A revision of Polymeridium (Muell. Arg.) R.C. Harris (Trypetheliaceae). Boletim do Museu Paraense 'Emilio Goeldi', série Botânica 7 (1991) 619-644
34. Harris R.C. More Florida Lichens: including the 10c tour of the pyrenolichens (1995), R. C. Harris, Bronx, NY
35. Harris R.C. A preliminary revision of Pseudopyrenula Müll. Arg. (lichenized Ascomycetes, Trypetheliaceae) with a redisposition of the names previously assigned to the genus. In: Glenn M.G., Harris R.C., Dirig R., and Cole M.S. (Eds). Lichenographia Thomsoniana: North American Lichenology in Honor of John W. Thomson (1998), Mycotaxon, Ithaca, NY 133-148
36. Hawksworth D.L., Kirk P.M., Sutton B.C., and Pegler D.N. Ainsworth & Bisby's Dictionary of the Fungi. 8th edn. (1995), CAB International, Wallingford
37. Henssen A. Studies in the developmental morphology of lichenized ascomycetes. In: Brown D.H., Hawksworth D.L., and Bailey R.H. (Eds). Lichenology: progress and problems (1976), Academic Press, London 107-138
38. Henssen A. Sagiolechia atlantica, eine neue Flechte von den Atlantischen Inseln (Ascomycotina, Ostropales). Bibliotheca Lichenologica 58 (1995) 123-136
39. Henssen A., and Jahns H.M. Lichenes (1973 ["1974"]), Georg Thieme Verlag, Stuttgart
40. Henssen A., and Lücking R. Morphology, anatomy, and ontogeny in the Asterothyriaceae (Ascomycota: Ostropales), a misunderstood group of lichenized fungi. Annales Botanici Fennici 39 (2002) 273-299
41. Henssen A., and Thor G. Developmental morphology of the 'Zwischengruppe' between Ascohymeniales and Ascoloculares. In: Hawksworth D.L. (Ed). Ascomycete Systematics: problems and perspectives in the nineties (1994), Plenum Press, New York 43-56
42. Höhnel F.v. Fragmente zur Mykologie III. Mitt., Nr. 92-155. Sitzungsberichte der Kaiserlichen Akademie der Wissenschaften Wien, Mathematisch-Naturwissenschaftliche Klasse, Abteilung 1 116 (1907) 615-647
43. Huhndorf S.M., Miller A.N., and Fernandez F.A. Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae redefined. Mycologia 96 (2004) 368-387
44. Jahns H.M. Untersuchungen zur Entwicklungsgeschichte der Cladoniaceen mit besonderer Berücksischtigung des Podetien-Problems. Nova Hedwigia 20 (1970) 1-177
45. Janex-Favre M. Recherches sur l'ontogénie, l'organisation et les asques de quelques pyrénolichens. Revue Bryologie et Lichénologie 37 (1970) 421-649
46. Janex-Favre M. Sur le développement et la structure des ascocarpes et la position systématique du mycobiont du lichen pyrénocarpe Arthopyrenia conoidea (Fr.). Zahlbr. Revue Bryologie et Lichénologie 37 (1970) 163-182
47. Kauff F., and Lutzoni F. Phylogeny of Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits. Molecular Phylogenetics and Evolution 25 (2002) 138-156
48. Kirk P.M., Cannon P.F., David J.C., and Stalpers J.A. Ainsworth & Bisby's; Dictionary of the Fungi. 9th edn. (2001), CAB International, Wallingford
49. Kurtzman C.P., and Robnett C.J. Orders and families of ascosporogenous yeasts and yeast-like taxa compared from ribosomal RNA sequence similarity. In: Hawksworth D.L. (Ed). Ascomycete Systematics: problems and perspectives in the nineties (1994), Plenum Press, New York 249-258
50. Landvik S., Eriksson O.E., and Berbee M.L. Neolecta - a fungal dinosaur? Evidence from beta-tubulin amino acid sequences. Mycologia 93 (2001) 1151-1163
51. Lee S., and Hanlin R.T. Phylogenetic relationships of Chaetomium and similar genera based on ribosomal DNA sequences. Mycologia 91 (1999) 434-442
52. Letrouit-Galinou M.A. Revision monographique du genre Laurera (lichens, Trypetheliacees). Revue Bryologique et Lichénologique 26 (1957) 207-264
53. Letrouit-Galinou M.A. Revision monographique du genre Laurera (lichens, Trypetheliacees). Revue Bryologique et Lichénologique 27 Suppl 1 (1958) 66-73
54. Letrouit-Galinou M.A. Recherches sur l'ontogenie et l'anatomie comparees des apothecies de quelques discolichens. Revue Bryologie et Lichénologie 34 (1966) 413-588
55. Liew E.C., Aptroot A., and Hyde K.D. Phylogenetic significance of the pseudoparaphyses in loculoascomycete taxonomy. Molecular Phylogenetics and Evolution 16 (2000) 392-402
56. Lindemuth R., Wirtz N., and Lumbsch H.T. Phylogenetic analysis of nuclear and mitochondrial sequence data supports that loculoascomycetes (Ascomycota) are not monophyletic. Mycological Research 105 (2001) 1176-1181
57. Liu Y.J., and Hall B.D. Body plan evolution of ascomycetes, as inferred from an RNA polymerase II, phylogeny. Proceedings of the National Academy of Sciences, USA 101 (2004) 4507-4512
58. Liu Y.J., Whelen S., and Hall B.D. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerase II subunit. Molecular Biology and Evolution 16 (1999) 1799-1808
59. Lücking R., Stuart B.L., and Lumbsch H.T. Phylogenetic relationships of Gomphillaceae and Asterothyriaceae: evidence from a combined Bayesian analysis of nuclear and mitochondrial sequences. Mycologia 96 (2004) 283-294
60. Lumbsch H.T. Die holarktischen Vertreter der Flechtengattung Diploschistes (Thelotremataceae). Journal of the Hattori Botanical Laboratory 66 (1989) 133-196
61. Lumbsch H.T. Systematic studies in the suborder Agyriineae (Lecanorales). Journal of the Hattori Botanical Laboratory 83 (1997) 1-73
62. Lumbsch H.T., and Lindemuth R. Major lineages of Dothideomycetes (Ascomycota) inferred by SSU and LSU rDNA sequences. Mycological Research 105 (2001) 901-908
63. Lumbsch H.T., Wirtz N., Lindemuth R., and Schmitt I. Higher level phylogenetic relationships of euascomycetes (Pezizomycotina) inferred from a combined analysis of nuclear and mitochondrial sequence data. Mycological Progress 1 (2002) 57-70
64. Lumbsch H.T., Schmitt I., Palice Z., Wiklund E., Ekman S., and Wedin M. Supraordinal phylogenetic relationships of Lecanoromycetes based on a Bayesian analysis of combined nuclear and mitochondrial sequences. Molecular Phylogenetics and Evolution 31 (2004) 822-832
65. Lumbsch H.T., Mangold A., Lücking R., García M.A., and Martín M.P. Phylogenetic position of the genera Nadvornikia and Pyrgillus (Ascomycota) based on molecular data. Symbolae Botanicae Upsalienses 34 1 (2004) 9-17
66. Lumbsch H.T., Lindemuth R., and Schmitt I. Evolution of filamentous ascomycetes inferred from LSU rDNA data. Plant Biology 2 (2000) 525-529
67. Lumbsch H.T., Schmitt I., Lindemuth R., Miller A., Mangold A., Fernandez F., and Huhndorf S. Performance of four ribosomal DNA regions to infer higher-level phylogenetic relationships of inoperculate euascomycetes (Leotiomyceta). Molecular Phylogenetics and Evolution 34 (2005) 512-524
68. Lundqvist N. Nordic Sordariaceae s. lat. Symbolae Botanicae Upsaliensis 20 (1972) 1-374
69. Luttrell E.S. Taxonomy of the pyrenomycetes. University of Missouri Studies 24 (1951) 1-120
70. Luttrell E.S. The ascostromatic ascomycetes. Mycologia 47 (1955) 511-532
71. Luttrell E.S. Loculoascomycetes. In: Ainsworth G.C., Sparrow F.K., and Sussman A.S. (Eds). The Fungi: An Advanced Treatise (1973), Academic Press, New York 135-219
72. Lutzoni F., Pagel M., and Reeb V. Major fungal lineages are derived from lichen symbiotic ancestors. Nature 411 (2001) 937-940
73. Lutzoni F., Kauff F., Cox C.J., McLaughlin D., Celio G., Dentinger B., Padamsee M., Hibbett D., James T.Y., Baloch E., Grube M., Reeb V., Hofstetter V., Schoch C., Arnold A.E., Miadlikowska J., Spatafora J., Johnson D., Hambleton S., Crockett M., Shoemaker R., Sung H., Lücking R., Lumbsch T., O'Donell K., Binder M., Diederich P., Ertz D., Gueidan C., Hansen K., Harris R.C., Hosaka K., Lim Y.W., Matheny B., Nishida H., Pfister D., Rogers J., Rossman A., Schmitt I., Sipman H., Stone J., Sugiyama J., Yahr R., and Vilgalys R. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany 91 (2004) 1446-1480
74. Martín M.P., LaGreca S., and Lumbsch H.T. Molecular phylogeny of Diploschistes inferred from ITS sequence data. Lichenologist 35 (2003) 27-32
75. Mayrhofer H. Monographie der Flechtengattung Thelenella. Bibliotheca Lichenologica 26 (1987) 1-106
76. Mayrhofer H., and Poelt J. Die Flechtengattung Microglaena sensu Zahlbruckner in Europa. Herzogia 7 (1985) 13-79
77. Miadlikowska J., and Lutzoni F. Phylogenetic classification of peltigeralean fungi (Peltigerales, Ascomycota). American Journal of Botany 91 (2004) 449-464
78. Miller A.N., and Huhndorf S.M. A natural classification of Lasiosphaeria based on nuclear LSU rDNA sequences. Mycological Research 108 (2004) 26-34
79. Miller A.N., and Huhndorf S.M. Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi). Molecular Phylogenetics and Evolution 35 (2005) 60-75
80. Morgan-Jones G., and Swinscow T.D.V. On the genus Microglaena Körb. Lichenologist 3 (1965) 42-54
81. Müller E., and von Arx J.A. Einige Aspekte zur Systematik pseudosphaerialer Ascomyceten. Berichte der Schweizerischen Botanischen Gesellschaft 60 2 (1950) 329-397
82. Müller E., and von Arx J.A. Die Gattungen der didymosporen Pyrenomyceten. Beiträge zur Kryptogamenflora der Schweiz 11 2 (1962) 1-922
83. Nannfeldt J.A. Studien über die Morphologie und Systematik der nicht-lichenisierten inoperculaten Discomyceten. Nova Acta Regiae Societatis Sci. Upsaliensis, ser. IV 8 (1932) 1-368
84. Pabst G. Cryptogamen-Flora (1876),, Griesbach, Gera
85. Parguey-Leduc A., and Janex-Favre M.C. The ascocarps of ascohymenial pyrenomycetes. In: Reynolds D.R. (Ed). Ascomycete Systematics: the luttrellian concept (1981), Springer-Verlag, New York 102-123
86. Rabenhorst L. Kryptogamen-Flora von Sachsen, der Oberlausitz, Thüringen und Nordböhmen mit Berücksichtigung der benachbarten Länder Vol. 2 (1870), . Kummer, Leipzig
87. Reeb V., Lutzoni F., and Roux C. Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. Molecular Phylogenetics and Evolution 32 (2004) 1036-1060
88. Reynolds D.R. Capnodiaceous sooty mold phylogeny. Canadian Journal of Botany 76 (1998) 2125-2130
89. Santesson R. Foliicolous lichens I. A revision of the taxonomy of the obligately foliicolous, lichenized fungi. Symbolae Botanicae Upsaliensis 12 1 (1952) 1-590
90. Schmitt I., Mueller G., and Lumbsch H.T. Ascoma morphology is homoplaseous and phylogenetically misleading in some pyrenocarpous lichens. Mycologia 97 (2005) 362-374
91. Sherwood M.A. The ostropalean fungi. Mycotaxon 5 (1977) 1-277
92. Silva-Hanlin D.M.W., and Hanlin R.T. Small subunit ribosomal RNA gene phylogeny of several loculoascomycetes and its taxonomic implications. Mycological Research 103 (1999) 153-160
93. Spatafora J.W. Ascomal evolution of filamentous ascomycetes - evidence from molecular data. Canadian Journal of Botany 73 Suppl 1 (1995) S811-S815
94. Spatafora J.W., and Blackwell M. Molecular systematics of unitunicate perithecial ascomycetes - the Clavicipitales-Hypocreales connection. Mycologia 85 (1993) 912-922
95. Spatafora J.W., and Blackwell M. Cladistic analysis of partial ssrDNA sequences among unitunicate perithecial ascomycetes and its implications on the evolution of centrum development. In: Hawksworth D.L. (Ed). Ascomycete Systematics: problems and perspectives in the nineties (1994), Plenum Press, New York 233-242
96. Spatafora J.W., Volkmann-Kohlmeyer B., and Kohlmeyer J. Independent terrestrial origins of the Halosphaeriales (marine Ascomycota). American Journal of Botany 85 (1998) 1569-1580
97. Spatafora J.W., Mitchell T.G., and Vilgalys R. Analysis of genes coding for small-subunit rRNA sequences in studying phylogenetics of dematiaceous fungal pathogens. Journal of Clinical Microbiology 33 (1995) 1322-1326
98. Staiger B., Kalb K., and Grube M. Phylogeny and phenotypic variation in the lichen family Graphidaceae (Ostropomycetidae, Ascomycota). Mycological Research 110 (2006) 765-772
99. Suh S.O., and Blackwell M. Molecular phylogeny of the cleistothecial fungi placed in Cephalothecaeae and Pseudeurotiaceae. Mycologia 91 (1999) 836-848
100. Swinscow T.D.V. Pyrenocarpous lichens: 6. Lichenologist 2 (1964) 276-283
101. Tehler A., Farris J.S., Lipscomb D.L., and Källersjö M. Phylogenetic analyses of the fungi based on large rDNA data sets. Mycologia 92 (2000) 459-474
102. Tehler A., Little D.P., and Farris J.S. The full-length phylogenetic tree from 1551 ribosomal sequences of chitinous fungi, Fungi. Mycological Research 107 (2003) 901-916
103. Tibell L. Caliciales. Flora Neotropica 69 (1996) 1-78
104. Tuckerman E. Lichens of the Hawaiian Islands. Proceedings of the American Academy of Arts and Sciences 7 (1867) 223-235
105. Untereiner W.A., Straus N.A., and Malloch D. A molecular-morphotaxonomic approach to the systematics of the Herpotrichiellaceae and allied black yeasts. Mycological Research 99 (1995) 897-913
106. Vězda A. Taxonomische Revision der Gattung Thelopsis Nyl. (lichenisierte Fungi). Folia Geobotanica et Phytotaxonomica, Praha 3 (1968) 363-406
107. Winka K, 2000. Phylogenetic relationships within the Ascomycota based on 18S rDNA sequences. PhD thesis, Umeå University.
108. Winka K., Ahlberg C., and Eriksson O.E. Are there lichenized Ostropales?. Lichenologist 30 (1998) 455-462
109. Winka K., Eriksson O.E., and Bång A. Molecular evidence for recognizing the Chaetothyriales. Mycologia 90 (1998) 822-830
110. Zahlbruckner A. Lichenes (Flechten). B. Spezieller Teil. In: Engler A., and Prantl K. (Eds). Die natürlichen Pflanzenfamilien. 2nd edn. Vol. 8 (1926), Engelmann, Leipzig 61-270
111. Zogg H. Die Hysteriaceae s.str. und Lophiaceae unter besonderer Berücksichtigung der mitteleuropäischen Formen. Beiträge zur Kryptogamenflora der Schweiz 11 3 (1962) 1-190
112. Zhang N., and Blackwell M. Molecular phylogeny of Melanospora and similar pyrenomycetous fungi. Mycological Research 106 (2002) 148-155
113. Zschacke H. Epigloeaceae, Verrucariaceae und Dermatocarpaceae. Rabenhorst's Kryptogamenflora von Deutschland, Österreich und der Schweiz 9 1,1 (1934) 44-695