A new lineage of lichenized basidiomycetes inferred from a two-gene phylogeny: The lepidostromataceae with three species from the tropics

American Journal of Botany

Volumn 95, Issue 12, 2008, Pages 1548-1556

  Ertz, Damien ^a   Lawrey, James D ^b   Sikaroodi, Masoumeh ^b   Gillevet, Patrick M ^b   Fischer, Eberhard ^c   Killmann, Dorothee ^c   Sérusiaux, Emmanuël ^d  

^a BOTANIC GARDEN MEISE   (Belgium)

^b GEORGE MASON UNIVERSITY   (United States)

^c University Koblenz Landau ^*  (Germany)

^d UNIVERSITY OF LIÈGE   (Belgium)

Author keywords

Africa; Agaricales; Atheliales; Basidiomycetes; Lepidostroma; Lichens; Multiclavula; Neotropics; rDNA sequence analyses; Symbiosis

Indexed keywords

BAYESIAN ANALYSIS; CLADISTICS; DNA; FUNGUS; LICHEN; MOLECULAR ANALYSIS; MORPHOLOGY; NEOTROPICAL REGION; NEW GENUS; PHYLOGENY; SOIL MICROORGANISM; SYMBIOSIS;

AFRICA; CENTRAL AMERICA; COSTA RICA; MEXICO [NORTH AMERICA]; NORTH AMERICA;

AGARICALES; ANTHOZOA; BASIDIOMYCOTA; CANTHARELLALES; FUNGI; MULTICLAVULA;

EID: 57349084667     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.0800232     Document Type: Article

References (57)

1. APTROOT, A., AND H. SIPMAN. 1991. New lichens and lichen records from New Guinea. Willdenowia 20: 221-256.
2. BINDER, M., AND D. S. HIBBETT. 2006. Molecular systematics and biological diversification of Boletales. Mycologia 98: 971-981
3. BINDER, M., D. S. HIBBETT, K.-H. LARSSON, E. LARSSON, E. LANGER, AND G. LANGER. 2005. The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes). Systematics and Biodiversity 3: 113-157.
4. BURGESS, N., J. D' AMICO HALES, E. UNDERWOOD, E. DINERSTEIN, D. OLSON, I. ITOUA, J. SCHIPPER, et al. 2004. Terrestrial ecoregions of Africa and Madagascar. A Conservation Assessment. Island Press, Washington, D.C., USA.
5. CHAVES, J. L., R. LÜCKING, H. J. M. SIPMAN, L. UMAÑA, AND E. NAVARRO. 2004. A first assessment of the ticolichen biodiversity inventory in Costa Rica: The genus Dictyonema (Polyporales: Atheliaceae). The Bryologist 107: 242-249.
6. CHRISTIANSEN, M. P. 1960. Danish resupinate fungi. Part II. Homobasidiomycetes. Dansk Botanisk Arkiv 19: 57-388.
7. CORNER, E. J. H. 1966. A monograph of cantharelloid fungi. Annals of Botany Memoir no. 2. Oxford University Press, London, UK.
8. CUNNINGHAM, C. W., H. ZHU, AND D. M. HILLIS. 1998. Best-fit maximum likelihood models for phylogenetic inference: Empirical tests with known phylogenies. Evolution 52: 978-987.
9. DIEDERICH, P., AND J. LAWREY. 2007. New lichenicolous, muscicolous, corticolous and lignicolous taxa of Burgoa s. l. and Marchandiomyces s. l. (anamorphic Basidiomycota), a new genus for Omphalina foliacea, and a catalogue and a key to the non-lichenized, bulbilliferous basidiomycetes. Mycological Progress 6: 61-80.
10. FISCHER, E., D. ERTZ, D. KILLMANN, AND E. SÉRUSIAUX. 2007. Two new species of Multiclavula (lichenized basidiomycetes) from savanna soils in Rwanda (East Africa). Botanical Journal of the Linnean Society 155: 457-465.
11. GARGAS, A., P. T. DEPRIEST, M. GRUBE, AND A. TEHLER. 1995. Multiple origins of lichen symbioses in fungi suggested by SSUrDNA phylogeny. Science 268: 1492-1495.
12. GARGAS, A., AND J. W. TAYLOR. 1992. Polymerase chain reaction (PCR) primers for amplifying and sequencing 18S rDNA from lichenized fungi. Mycologia 84: 589-592.
13. GRUBE, M., AND D. L. HAWKSWORTH. 2007. Trouble with lichen: The reevaluation and re-interpretation of thallus form and fruit body types in the molecular era. Mycological Research 111: 1116-1132.
14. st century. Mycological Research 111: 1001-1018.
15. HIBBETT, D. S., M. BINDER, J. F. BISCHOFF, M. BLACKWELL, P. F. CANNON, O. E. ERIKSSONE, S. HUHNDORFF, et al. 2007. A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509-547.
16. HIBBETT, D. S., AND R. G. THORN. 2001. Basidiomycota: Homobasidiomycetes. In D. J. McLauglin, E. G. McLauglin, and P. A. Lemke [eds.], The Mycota, vol. VII, part B, Systematics and evolution, 121-167. Springer-Verlag, Berlin, Germany.
17. HONEGGER, R. 1996. Mycobionts. In T. H. Nash III [ed.], The biology of lichens, 25-36. Cambridge University Press, Cambridge, UK.
18. JøRGENSEN, P. M. 1998. Acantholichen pannarioides, a new basidiolichen from South America. The Bryologist 101: 444-447.
19. JÜLICH, W. 1972. Monographie der Athelieae (Corticiaceae, Basidiomycetes). Willdenowia 7: 1-283.
20. KAUFF, F., AND F. LUTZONI. 2002. Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): Among and within order relationships based on nuclear ribosomal RNA small and large subunits. Molecular Phylogenetics and Evolution 25: 138-156.
21. LARSSON, K.-H. 2007. Re-thinking the classification of corticioid fungi. Mycological Research 111: 1040-1063.
22. LARSSON, K.-H., E. LARSSON, AND U. KÕ LJALG. 2004. High phylogenetic diversity among corticioid homobasidiomycetes. Mycological Research 108: 983-1002.
23. LARSSON, K.-H., E. PARMASTO, M. FISCHER, E. LANGER, K. K. NAKASONE, AND S. A. REDHEAD. 2006. Hymenochaetales: A molecular phylogeny for the hymenochaetoid clade. Mycologia 98: 926-936.
24. LAWREY, J. D., M. BINDER, P. DIEDERICH, M. CARMEN MOLINA, M. SIKAROODI, AND D. ERTZ. 2007. Phylogenetic diversity of lichen-associated homobasidiomycetes. Molecular Phylogenetics and Evolution 44: 778-789.
25. LAWREY, J. D., P. DIEDERICH, M. SIKAROODI, AND P. M. GILLEVET. 2008. Remarkable nutritional diversity of basidiomycetes in the Corticiales, including a new foliicolous species of Marchandiomyces (anamorphic Basidiomycota, Corticiaceae) from Australia. American Journal of Botany 95: 816-823.
26. LIÒ, P., AND N. GOLDMAN. 1998. Models of molecular evolution and phylogeny. Genome Research 8: 1233-1244.
27. LODGE, D. J., P. B. MATHENY, S. A. CANTRELL, J.-M. MONCALVO, R. VILGALYS, AND S. REDHEAD. 2006. Delineating the Hygrophoraceae: Character myths vs. gene trees. Mycological Society of America Annual Meeting Abstracts. Inoculum 57: 27.
28. LÜCKING, R. 2008. How many tropical lichens are there - really? IAL6 - American Bryological and Lichen Society joint meeting, Alisomar, California, USA, 2008. Abstracts available at http://www.lichenology.org/ IAL6_ABLS/scientific_program.jsp.
29. LUTZONI, F. 1997. Phylogeny of lichen- and non-lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets. Systematic Biology 46: 373-406.
30. LUTZONI, F., AND R. VILGALYS. 1995. Omphalina (Basidiomycota, Agaricales) as a model system for the study of coevolution in lichens. Cryptogamic Botany 5: 71-81.
31. MADDISON, D., AND W. MADDISON. 2002. MacClade version 4.03PPC: Analysis of phylogeny and character evolution. Sinauer, Sunderland, Massachusetts, USA.
32. MÄGDEFRAU, K., AND S. WINKLER. 1967. Lepidostroma terricolens n. g. n. sp., eine Basidiolichene der Sierra Nevada de Santa Marta (Kolumbien). Mitteilungen des Institute Colombo-Alemán. Investigaciones Científicas 1: 11-17.
33. MARTIN, G. W. 1940. Some tropical American "Clavarias" . Lilloa 5: 191-196.
34. MASON-GAMER, R. J., AND E. A. KELLOGG. 1996. Testing for phylogenetic conflict among molecular datasets in the tribe Triticeae (Gramineae). Systematic Biology 45: 524-545.
35. MATHENY, P. B., J. M. CURTIS, V. HOFSTETTER, M. C. AIME, J.-M. MONCALVO, Z.-W. GE, Z.-L. YANG, ET AL. 2006. Major clades of Agaricales: A multilocus phylogenetic overview. Mycologia 98: 982-995.
36. MONCALVO,J.-M., R. VILGALYS, S. A. REDHEAD, J. E. JOHNSON, T. Y. JAMES, M. C. AIME, V. HOFSTETTER, S. J. W. VERDUIN, E. LARSSON, T. J. BARONI, R. G. THORN, S. JACOBSSON, H. CLÉMENÇON, ANDO. K. MILLER Jr. 2002. One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution 23: 357-400.
37. NELSEN, M. P., R. LÜCKING, L. UMAÑ A, M. T. TREST, S. WILL-WOLF, J. L. CHAVES, AND A. GARGAS. 2007. Multiclavula ichthyiformis (Fungi: Basidiomycota: Cantharellales: Clavulinaceae), a remarkable new basidiolichen from Costa Rica. American Journal of Botany 94: 1289-1296.
38. OBERWINKLER, F. 1965. Primitive Basidiomyceten Revision einiger Formenkreise von Basidienpilzen mit plastischer Basidie. Sydowia (II) 19: 1-72.
39. OBERWINKLER, F. 1970. Die Gattungen der Basidiolichenen. Berichte der Deutschen Botanischen Gesellschaft 4: 139-169.
40. OBERWINKLER, F. 1984. Fungus-alga interactions in basidiolichens. Beiheft zur Nova Hedwigia 79: 739-774.
41. OBERWINKLER, F. 2001. Basidiolichens. In B. Hock [ed.], The Mycota, vol. IX, Fungal associations, 211-225. Springer-Verlag, Berlin, Germany.
42. PALICE, Z., I. SCHMITT, AND H. T. LUMBSCH. 2005. Molecular data confirm that Omphalina foliacea is a lichen-forming basidiomycete. Mycological Research 109: 447-451.
43. PETERSEN, R. H. 1967. Notes on Clavarioid fungi. VII. Redefinition of Clavaria vernalis - C. mucida complex. American Midland Naturalist 77: 205-221.
44. POELT, J. AND W. JÜLICH. 1969. Über die Beziehungen zweier corticioider Basidiomyceten zu Algen. Österreichische Botanische Zeitschrift 116: 400-410.
45. POELT, J., AND W. OBERMAYER. 1990. Lichinisierte Bulbillen als Diasporen bei der Basidiolichene Multiclavula vernalis spec. coll. Herzogia 8: 289-294.
46. POSADA, D., AND K. A. CRANDALL. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics (Oxford, England) 14: 817-818.
47. POSADA, D., AND K. A. CRANDALL. 2001. Selecting the best-fit model of nucleotide substitution. Systematic Biology 50: 580-601.
48. REDHEAD, S. A. 1984. Arrhenia and Rimbachia, expanded generic concepts, and a reevaluation of Leptoglossum with emphasis on muscicolous North American taxa. Canadian Journal of Botany 62: 865-892.
49. REDHEAD, S. A., F. LUTZONI, J.-M. MONCALVO, AND R. VILGALYS. 2002a. Phylogeny of agarics: Partial systematics solutions for core omphalinoid genera in the Agaricales (Euagarics). Mycotaxon 83: 19-57.
50. REDHEAD, S. A., J.-M. MONCALVO, R. VILGALYS, AND F. LUTZONI. 2002b. Phylogeny of agarics: Partial systematics solutions for bryophilous omphalinoid agarics outside of the Agaricales (Euagarics). Mycotaxon 82: 151-168.
51. REHNER, S. A., AND G. J. SAMUELS. 1994. Taxonomy and phylogeny of Gliocladium analysed from nuclear large subunit ribosomal DNA sequences. Mycological Research 98: 625-634.
52. RODRÍGUEZ, F., J. L. OLIVER, A. MARÍN, AND J. R. MEDINA. 1990. The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 142: 485-501.
53. RONQUIST, F., AND J. P. HUELSENBECK. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England) 19: 1572-1574.
54. SWOFFORD, D. L. 2002. PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer, Sunderland, Massachusetts, USA.
55. VILGALYS, R., AND M. HESTER. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246.
56. YANG, Z., N. GOLDMAN, AND A. FRIDAY. 1994. Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. Molecular Biology and Evolution 11: 316-324.
57. ZWICKL, D. J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, University of Texas, Austin, Texas, USA.