Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

Genome Research

Volumn 23, Issue 1, 2013, Pages 129-141

  Schadt, Eric E ^a   Banerjee, Onureena ^b   Fang, Gang ^c   Feng, Zhixing ^d,e   Wong, Wing H ^d   Zhang, Xuegong ^e   Kislyuk, Andrey ^b   Clark, Tyson A ^b   Luong, Khai ^b   Keren Paz, Alona ^a   Chess, Andrew ^a   Kumar, Vipin ^c   Chen Plotkin, Alice ^f   Sondheimer, Neal ^f   Korlach, Jonas ^b   Kasarskis, Andrew ^a  

^a MOUNT SINAI SCHOOL OF MEDICINE   (United States)

^b PACIFIC BIOSCIENCES   (United States)

^c University of Minnesota   (United States)

^d STANFORD UNIVERSITY   (United States)

^e TSINGHUA UNIVERSITY   (China)

^f UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

8 HYDROXYGUANINE; BACTERIAL DNA; DNA BASE; DNA METHYLTRANSFERASE; MITOCHONDRIAL DNA; PLASMID DNA;

ARTICLE; BRAIN TISSUE; CONDITIONAL RANDOM FIELD MODEL; CONTROLLED STUDY; DNA MODIFICATION; DNA SEQUENCE; ESCHERICHIA COLI; GENOME; HUMAN; INTERMETHOD COMPARISON; KINETICS; NONHUMAN; PERFORMANCE; PRIORITY JOURNAL; SINGLE MOLECULE REAL TIME TECHNOLOGY;

DNA, BACTERIAL; DNA, MITOCHONDRIAL; ESCHERICHIA COLI; GUANOSINE; HUMANS; KINETICS; OXIDATION-REDUCTION; SEQUENCE ANALYSIS, DNA;

ESCHERICHIA COLI;

EID: 84870939871     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.136739.111     Document Type: Article

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