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Volumn 13, Issue 1, 2012, Pages

The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger

Author keywords

Aspergillus niger; Endoplasmic reticulum; Glucoamylase; HacA; Protein expression; Secretion; Transcriptome; Unfolded protein response

Indexed keywords

GLUCAN 1,4 ALPHA GLUCOSIDASE; TRANSCRIPTOME;

EID: 84870862525     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-701     Document Type: Article
Times cited : (47)

References (61)
  • 1
    • 38349002470 scopus 로고    scopus 로고
    • Genetic engineering of filamentous fungi-progress, obstacles and future trends
    • 10.1016/j.biotechadv.2007.12.001, 18201856
    • Meyer V. Genetic engineering of filamentous fungi-progress, obstacles and future trends. Biotechnol Adv 2008, 26(2):177-185. 10.1016/j.biotechadv.2007.12.001, 18201856.
    • (2008) Biotechnol Adv , vol.26 , Issue.2 , pp. 177-185
    • Meyer, V.1
  • 2
    • 79951771512 scopus 로고    scopus 로고
    • Aspergillus as a multi-purpose cell factory: current status and perspectives
    • 3040820, 21088867
    • Meyer V, Wu B, Ram AF. Aspergillus as a multi-purpose cell factory: current status and perspectives. Biotechnol Lett 2010, 33(3):469-476. 3040820, 21088867.
    • (2010) Biotechnol Lett , vol.33 , Issue.3 , pp. 469-476
    • Meyer, V.1    Wu, B.2    Ram, A.F.3
  • 5
    • 77955557873 scopus 로고    scopus 로고
    • Expression and export: recombinant protein production systems for Aspergillus
    • 10.1007/s00253-010-2672-6, 20532762
    • Fleissner A, Dersch P. Expression and export: recombinant protein production systems for Aspergillus. Appl Microbiol Biotechnol 2010, 87(4):1255-1270. 10.1007/s00253-010-2672-6, 20532762.
    • (2010) Appl Microbiol Biotechnol , vol.87 , Issue.4 , pp. 1255-1270
    • Fleissner, A.1    Dersch, P.2
  • 7
    • 77955445449 scopus 로고    scopus 로고
    • Quantitative iTRAQ secretome analysis of Aspergillus niger reveals novel hydrolytic enzymes
    • 10.1021/pr100148j, 20545367
    • Adav SS, Li AA, Manavalan A, Punt P, Sze SK. Quantitative iTRAQ secretome analysis of Aspergillus niger reveals novel hydrolytic enzymes. J Proteome Res 2010, 9(8):3932-3940. 10.1021/pr100148j, 20545367.
    • (2010) J Proteome Res , vol.9 , Issue.8 , pp. 3932-3940
    • Adav, S.S.1    Li, A.A.2    Manavalan, A.3    Punt, P.4    Sze, S.K.5
  • 8
    • 77957907451 scopus 로고    scopus 로고
    • An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data
    • 10.1186/1471-2164-11-584, 3091731, 20959013
    • Braaksma M, Martens-Uzunova ES, Punt PJ, Schaap PJ. An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data. BMC Genomics 2010, 11:584. 10.1186/1471-2164-11-584, 3091731, 20959013.
    • (2010) BMC Genomics , vol.11 , pp. 584
    • Braaksma, M.1    Martens-Uzunova, E.S.2    Punt, P.J.3    Schaap, P.J.4
  • 9
    • 79959214917 scopus 로고    scopus 로고
    • Proteomic analysis of the secretory response of Aspergillus niger to D-maltose and D-xylose
    • 10.1371/journal.pone.0020865, 3117840, 21698107
    • de Oliveira JM, van Passel MW, Schaap PJ, de Graaff LH. Proteomic analysis of the secretory response of Aspergillus niger to D-maltose and D-xylose. PLoS One 2011, 6(6):e20865. 10.1371/journal.pone.0020865, 3117840, 21698107.
    • (2011) PLoS One , vol.6 , Issue.6
    • de Oliveira, J.M.1    van Passel, M.W.2    Schaap, P.J.3    de Graaff, L.H.4
  • 10
    • 77950948619 scopus 로고    scopus 로고
    • The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate
    • 10.1186/1475-2859-9-23, 2874515, 20406453
    • Lu X, Sun J, Nimtz M, Wissing J, Zeng AP, Rinas U. The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate. Microb Cell Fact 2010, 9:23. 10.1186/1475-2859-9-23, 2874515, 20406453.
    • (2010) Microb Cell Fact , vol.9 , pp. 23
    • Lu, X.1    Sun, J.2    Nimtz, M.3    Wissing, J.4    Zeng, A.P.5    Rinas, U.6
  • 11
    • 84861115944 scopus 로고    scopus 로고
    • D-xylose concentration-dependent Hydrolase Expression Profiles and the Role of CreA and XlnR in A. niger
    • 10.1128/AEM.07772-11, 3346484, 22344641
    • Mach-Aigner AR, Omony J, Jovanovic B, van Boxtel AJ, de Graaff LH. D-xylose concentration-dependent Hydrolase Expression Profiles and the Role of CreA and XlnR in A. niger. Appl Environ Microbiol 2012, 78(9):3145-3155. 10.1128/AEM.07772-11, 3346484, 22344641.
    • (2012) Appl Environ Microbiol , vol.78 , Issue.9 , pp. 3145-3155
    • Mach-Aigner, A.R.1    Omony, J.2    Jovanovic, B.3    van Boxtel, A.J.4    de Graaff, L.H.5
  • 12
    • 33749643211 scopus 로고    scopus 로고
    • Database mining and transcriptional analysis of genes encoding inulin-modifying enzymes of Aspergillus niger
    • Yuan XL, Goosen C, Kools H, van der Maarel MJ, van den Hondel CA, Dijkhuizen L, Ram AF. Database mining and transcriptional analysis of genes encoding inulin-modifying enzymes of Aspergillus niger. Microbiology 2006, 152(Pt 10):3061-3073.
    • (2006) Microbiology , vol.152 , Issue.PART 10 , pp. 3061-3073
    • Yuan, X.L.1    Goosen, C.2    Kools, H.3    van der Maarel, M.J.4    van den Hondel, C.A.5    Dijkhuizen, L.6    Ram, A.F.7
  • 13
    • 0035022080 scopus 로고    scopus 로고
    • Regulation of the amylolytic and (hemi-)cellulolytic genes in Aspergilli
    • 10.2323/jgam.47.1, 12483563
    • Tsukagoshi N, Kobayashi T, Kato M. Regulation of the amylolytic and (hemi-)cellulolytic genes in Aspergilli. J Gen Appl Microbiol 2001, 47(1):1-19. 10.2323/jgam.47.1, 12483563.
    • (2001) J Gen Appl Microbiol , vol.47 , Issue.1 , pp. 1-19
    • Tsukagoshi, N.1    Kobayashi, T.2    Kato, M.3
  • 14
    • 0033490112 scopus 로고    scopus 로고
    • Surfing the Sec61 channel: bidirectional protein translocation across the ER membrane
    • Romisch K. Surfing the Sec61 channel: bidirectional protein translocation across the ER membrane. J Cell Sci 1999, 112(Pt 23):4185-4191.
    • (1999) J Cell Sci , vol.112 , Issue.PART 23 , pp. 4185-4191
    • Romisch, K.1
  • 15
    • 77952583297 scopus 로고    scopus 로고
    • Protein quality control in the ER: the recognition of misfolded proteins
    • 10.1016/j.semcdb.2010.03.006, 20347046
    • Maattanen P, Gehring K, Bergeron JJ, Thomas DY. Protein quality control in the ER: the recognition of misfolded proteins. Semin Cell Dev Biol 2010, 21(5):500-511. 10.1016/j.semcdb.2010.03.006, 20347046.
    • (2010) Semin Cell Dev Biol , vol.21 , Issue.5 , pp. 500-511
    • Maattanen, P.1    Gehring, K.2    Bergeron, J.J.3    Thomas, D.Y.4
  • 16
    • 77954266383 scopus 로고    scopus 로고
    • Genomics of protein folding in the endoplasmic reticulum, secretion stress and glycosylation in the Aspergilli
    • Geysens S, Whyteside G, Archer DB. Genomics of protein folding in the endoplasmic reticulum, secretion stress and glycosylation in the Aspergilli. Fungal Genet Biol 2009, 46(1):S121-S140.
    • (2009) Fungal Genet Biol , vol.46 , Issue.1
    • Geysens, S.1    Whyteside, G.2    Archer, D.B.3
  • 17
    • 1842787878 scopus 로고    scopus 로고
    • The transcription factor HACA mediates the unfolded protein response in Aspergillus niger, and up-regulates its own transcription
    • 10.1007/s00438-003-0965-5, 14730445
    • Mulder HJ, Saloheimo M, Penttila M, Madrid SM. The transcription factor HACA mediates the unfolded protein response in Aspergillus niger, and up-regulates its own transcription. Mol Genet Genomics 2004, 271(2):130-140. 10.1007/s00438-003-0965-5, 14730445.
    • (2004) Mol Genet Genomics , vol.271 , Issue.2 , pp. 130-140
    • Mulder, H.J.1    Saloheimo, M.2    Penttila, M.3    Madrid, S.M.4
  • 18
    • 34347206863 scopus 로고    scopus 로고
    • Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger
    • 10.1186/1471-2164-8-158, 1894978, 17561995
    • Guillemette T, van Peij NN, Goosen T, Lanthaler K, Robson GD, van den Hondel CA, Stam H, Archer DB. Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger. BMC Genomics 2007, 8:158. 10.1186/1471-2164-8-158, 1894978, 17561995.
    • (2007) BMC Genomics , vol.8 , pp. 158
    • Guillemette, T.1    van Peij, N.N.2    Goosen, T.3    Lanthaler, K.4    Robson, G.D.5    van den Hondel, C.A.6    Stam, H.7    Archer, D.B.8
  • 19
    • 84855217145 scopus 로고    scopus 로고
    • The cargo and the transport system: secreted proteins and protein secretion in Trichoderma reesei (Hypocrea jecorina)
    • Saloheimo M, Pakula TM. The cargo and the transport system: secreted proteins and protein secretion in Trichoderma reesei (Hypocrea jecorina). Microbiology 2012, 158(Pt 1):46-57.
    • (2012) Microbiology , vol.158 , Issue.PART 1 , pp. 46-57
    • Saloheimo, M.1    Pakula, T.M.2
  • 20
    • 0037323934 scopus 로고    scopus 로고
    • Activation mechanisms of the HAC1-mediated unfolded protein response in filamentous fungi
    • 10.1046/j.1365-2958.2003.03363.x, 12581366
    • Saloheimo M, Valkonen M, Penttila M. Activation mechanisms of the HAC1-mediated unfolded protein response in filamentous fungi. Mol Microbiol 2003, 47(4):1149-1161. 10.1046/j.1365-2958.2003.03363.x, 12581366.
    • (2003) Mol Microbiol , vol.47 , Issue.4 , pp. 1149-1161
    • Saloheimo, M.1    Valkonen, M.2    Penttila, M.3
  • 21
    • 0035966269 scopus 로고    scopus 로고
    • XBP1 mRNA Is Induced by ATF6 and Spliced by IRE1 in Response to ER Stress to Produce a Highly Active Transcription Factor
    • 10.1016/S0092-8674(01)00611-0, 11779464
    • Yoshida H, Matsui T, Yamamoto A, Okada T, Mori K. XBP1 mRNA Is Induced by ATF6 and Spliced by IRE1 in Response to ER Stress to Produce a Highly Active Transcription Factor. Cell 2001, 107(7):881-891. 10.1016/S0092-8674(01)00611-0, 11779464.
    • (2001) Cell , vol.107 , Issue.7 , pp. 881-891
    • Yoshida, H.1    Matsui, T.2    Yamamoto, A.3    Okada, T.4    Mori, K.5
  • 22
    • 0033562966 scopus 로고    scopus 로고
    • Stress signaling from the lumen of the endoplasmic reticulum: coordination of gene transcriptional and translational controls
    • 10.1101/gad.13.10.1211, 10346810
    • Kaufman RJ. Stress signaling from the lumen of the endoplasmic reticulum: coordination of gene transcriptional and translational controls. Genes Dev 1999, 13(10):1211-1233. 10.1101/gad.13.10.1211, 10346810.
    • (1999) Genes Dev , vol.13 , Issue.10 , pp. 1211-1233
    • Kaufman, R.J.1
  • 23
    • 60549083506 scopus 로고    scopus 로고
    • Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway
    • 10.1186/1471-2164-10-44, 2639373, 19166577
    • Jorgensen TR, Goosen T, Hondel CA, Ram AF, Iversen JJ. Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway. BMC Genomics 2009, 10:44. 10.1186/1471-2164-10-44, 2639373, 19166577.
    • (2009) BMC Genomics , vol.10 , pp. 44
    • Jorgensen, T.R.1    Goosen, T.2    Hondel, C.A.3    Ram, A.F.4    Iversen, J.J.5
  • 25
    • 70350496788 scopus 로고    scopus 로고
    • Microbial glucoamylases: characteristics and applications
    • 10.1080/07388550903136076, 19708824
    • Kumar P, Satyanarayana T. Microbial glucoamylases: characteristics and applications. Crit Rev Biotechnol 2009, 29(3):225-255. 10.1080/07388550903136076, 19708824.
    • (2009) Crit Rev Biotechnol , vol.29 , Issue.3 , pp. 225-255
    • Kumar, P.1    Satyanarayana, T.2
  • 26
    • 0027568439 scopus 로고
    • Glucoamylase Overexpression in Aspergillus niger - Molecular Genetic-Analysis of Strains Containing Multiple Copies of the glaA-gene
    • 10.1007/BF01969381, 8513339
    • Verdoes JC, Punt PJ, Schrickx JM, Vanverseveld HW, Stouthamer AH, Vandenhondel CAMJJ. Glucoamylase Overexpression in Aspergillus niger - Molecular Genetic-Analysis of Strains Containing Multiple Copies of the glaA-gene. Transgenic Res 1993, 2(2):84-92. 10.1007/BF01969381, 8513339.
    • (1993) Transgenic Res , vol.2 , Issue.2 , pp. 84-92
    • Verdoes, J.C.1    Punt, P.J.2    Schrickx, J.M.3    Vanverseveld, H.W.4    Stouthamer, A.H.5    Vandenhondel, C.A.M.J.J.6
  • 27
    • 0027941161 scopus 로고
    • Evaluation of Molecular and Genetic Approaches to Generate Glucoamylase Overproducing Strains of Aspergillus niger
    • 10.1016/0168-1656(94)90052-3, 7765235
    • Verdoes JC, Vandiepeningen AD, Punt PJ, Debets AJM, Stouthamer AH, Vandenhondel CAMJJ. Evaluation of Molecular and Genetic Approaches to Generate Glucoamylase Overproducing Strains of Aspergillus niger. J Biotechnol 1994, 36(2):165-175. 10.1016/0168-1656(94)90052-3, 7765235.
    • (1994) J Biotechnol , vol.36 , Issue.2 , pp. 165-175
    • Verdoes, J.C.1    Vandiepeningen, A.D.2    Punt, P.J.3    Debets, A.J.M.4    Stouthamer, A.H.5    Vandenhondel, C.A.M.J.J.6
  • 29
    • 80053493512 scopus 로고    scopus 로고
    • New resources for functional analysis of omics data for the genus Aspergillus
    • 10.1186/1471-2164-12-486, 3217955, 21974739
    • Nitsche BM, Crabtree J, Cerqueira GC, Meyer V, Ram AF, Wortman JR. New resources for functional analysis of omics data for the genus Aspergillus. BMC Genomics 2011, 12:486. 10.1186/1471-2164-12-486, 3217955, 21974739.
    • (2011) BMC Genomics , vol.12 , pp. 486
    • Nitsche, B.M.1    Crabtree, J.2    Cerqueira, G.C.3    Meyer, V.4    Ram, A.F.5    Wortman, J.R.6
  • 33
    • 44149100746 scopus 로고    scopus 로고
    • Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles
    • 10.1007/s00438-008-0332-7, 2413074, 18320228
    • Yuan XL, van der Kaaij RM, van den Hondel CAMJJ, Punt PJ, van der Maarel MJEC, Dijkhuizen L, Ram AFJ. Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles. Mol Genet Genomics 2008, 279(6):545-561. 10.1007/s00438-008-0332-7, 2413074, 18320228.
    • (2008) Mol Genet Genomics , vol.279 , Issue.6 , pp. 545-561
    • Yuan, X.L.1    van der Kaaij, R.M.2    van den Hondel, C.A.M.J.J.3    Punt, P.J.4    van der Maarel, M.J.E.C.5    Dijkhuizen, L.6    Ram, A.F.J.7
  • 34
    • 0242581693 scopus 로고    scopus 로고
    • The effects of drugs inhibiting protein secretion in the filamentous fungus Trichoderma reesei - Evidence for down-regulation of genes that encode secreted proteins in the stressed cells
    • 10.1074/jbc.M302372200, 12941955
    • Pakula TM, Laxell M, Huuskonen A, Uusitalo J, Saloheimo M, Penttila M. The effects of drugs inhibiting protein secretion in the filamentous fungus Trichoderma reesei - Evidence for down-regulation of genes that encode secreted proteins in the stressed cells. J Biol Chem 2003, 278(45):45011-45020. 10.1074/jbc.M302372200, 12941955.
    • (2003) J Biol Chem , vol.278 , Issue.45 , pp. 45011-45020
    • Pakula, T.M.1    Laxell, M.2    Huuskonen, A.3    Uusitalo, J.4    Saloheimo, M.5    Penttila, M.6
  • 35
    • 0037327305 scopus 로고    scopus 로고
    • Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes
    • 10.1105/tpc.007609, 141221, 12566592
    • Martinez IM, Chrispeels MJ. Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes. Plant Cell 2003, 15(2):561-576. 10.1105/tpc.007609, 141221, 12566592.
    • (2003) Plant Cell , vol.15 , Issue.2 , pp. 561-576
    • Martinez, I.M.1    Chrispeels, M.J.2
  • 36
    • 84864366831 scopus 로고    scopus 로고
    • Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress
    • Carvalho ND, Jørgensen TR, Arentshorst M, Nitsche BM, Hondel CA, Archer DB, Ram AF. Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress. BMC Genomics 2012, 30(13):350.
    • (2012) BMC Genomics , vol.30 , Issue.13 , pp. 350
    • Carvalho, N.D.1    Jørgensen, T.R.2    Arentshorst, M.3    Nitsche, B.M.4    Hondel, C.A.5    Archer, D.B.6    Ram, A.F.7
  • 37
    • 0030604713 scopus 로고    scopus 로고
    • Solution structure of the granular starch binding domain of glucoamylase from Aspergillus niger by nuclear magnetic resonance spectroscopy
    • 10.1006/jmbi.1996.0374, 8683599
    • Sorimachi K, Jacks AJ, Le Gal-Coeffet MF, Williamson G, Archer DB, Williamson MP. Solution structure of the granular starch binding domain of glucoamylase from Aspergillus niger by nuclear magnetic resonance spectroscopy. J Mol Biol 1996, 259(5):970-987. 10.1006/jmbi.1996.0374, 8683599.
    • (1996) J Mol Biol , vol.259 , Issue.5 , pp. 970-987
    • Sorimachi, K.1    Jacks, A.J.2    Le Gal-Coeffet, M.F.3    Williamson, G.4    Archer, D.B.5    Williamson, M.P.6
  • 38
    • 79951483232 scopus 로고    scopus 로고
    • Structure of the catalytic domain of glucoamylase from Aspergillus niger
    • Lee J, Paetzel M. Structure of the catalytic domain of glucoamylase from Aspergillus niger. Acta Crystallogr Sect F Struct Biol Cryst Commun 2011, 67(Pt 2):188-192.
    • (2011) Acta Crystallogr Sect F Struct Biol Cryst Commun , vol.67 , Issue.PART 2 , pp. 188-192
    • Lee, J.1    Paetzel, M.2
  • 39
    • 3042572562 scopus 로고    scopus 로고
    • Zinc-dependent dimerization of the folding catalyst, protein disulfide isomerase
    • 10.1110/ps.04716104, 2279941, 15169950
    • Solovyov A, Gilbert HF. Zinc-dependent dimerization of the folding catalyst, protein disulfide isomerase. Protein Sci 2004, 13(7):1902-1907. 10.1110/ps.04716104, 2279941, 15169950.
    • (2004) Protein Sci , vol.13 , Issue.7 , pp. 1902-1907
    • Solovyov, A.1    Gilbert, H.F.2
  • 41
    • 33750499961 scopus 로고    scopus 로고
    • Calcium gradients and the Golgi
    • Dolman NJ, Tepikin AV. Calcium gradients and the Golgi. Cell Calcium 2006, 40(5-6):505-512.
    • (2006) Cell Calcium , vol.40 , Issue.5-6 , pp. 505-512
    • Dolman, N.J.1    Tepikin, A.V.2
  • 42
    • 15944374827 scopus 로고    scopus 로고
    • Ca2+-regulated exocytosis and SNARE function
    • 10.1016/j.tem.2005.02.002, 15808803
    • Stojilkovic SS. Ca2+-regulated exocytosis and SNARE function. Trends Endocrinol Metab 2005, 16(3):81-83. 10.1016/j.tem.2005.02.002, 15808803.
    • (2005) Trends Endocrinol Metab , vol.16 , Issue.3 , pp. 81-83
    • Stojilkovic, S.S.1
  • 43
    • 68949128587 scopus 로고    scopus 로고
    • Function and biogenesis of iron-sulphur proteins
    • 10.1038/nature08301, 19675643
    • Lill R. Function and biogenesis of iron-sulphur proteins. Nature 2009, 460(7257):831-838. 10.1038/nature08301, 19675643.
    • (2009) Nature , vol.460 , Issue.7257 , pp. 831-838
    • Lill, R.1
  • 44
    • 68949170348 scopus 로고    scopus 로고
    • Metalloproteins and metal sensing
    • 10.1038/nature08300, 19675642
    • Waldron KJ, Rutherford JC, Ford D, Robinson NJ. Metalloproteins and metal sensing. Nature 2009, 460(7257):823-830. 10.1038/nature08300, 19675642.
    • (2009) Nature , vol.460 , Issue.7257 , pp. 823-830
    • Waldron, K.J.1    Rutherford, J.C.2    Ford, D.3    Robinson, N.J.4
  • 45
    • 84859724704 scopus 로고    scopus 로고
    • Transcriptional and proteomic analysis of the Aspergillus fumigatusΔprtT protease-deficient mutant
    • 10.1371/journal.pone.0033604, 3326020, 22514608
    • Hagag S, Kubitschek-Barreira P, Neves GW, Amar D, Nierman W, Shalit I, Shamir R, Lopes-Bezerra L, Osherov N. Transcriptional and proteomic analysis of the Aspergillus fumigatusΔprtT protease-deficient mutant. PLoS One 2012, 7(4):e33604. 10.1371/journal.pone.0033604, 3326020, 22514608.
    • (2012) PLoS One , vol.7 , Issue.4
    • Hagag, S.1    Kubitschek-Barreira, P.2    Neves, G.W.3    Amar, D.4    Nierman, W.5    Shalit, I.6    Shamir, R.7    Lopes-Bezerra, L.8    Osherov, N.9
  • 46
    • 77953634766 scopus 로고    scopus 로고
    • Iron-dependent remodeling of fungal metabolic pathways associated with ferrichrome biosynthesis
    • 10.1128/AEM.00659-10, 2893484, 20435771
    • Mercier A, Labbe S. Iron-dependent remodeling of fungal metabolic pathways associated with ferrichrome biosynthesis. Appl Environ Microbiol 2010, 76(12):3806-3817. 10.1128/AEM.00659-10, 2893484, 20435771.
    • (2010) Appl Environ Microbiol , vol.76 , Issue.12 , pp. 3806-3817
    • Mercier, A.1    Labbe, S.2
  • 47
    • 40649120516 scopus 로고    scopus 로고
    • Response to iron deprivation in Saccharomyces cerevisiae
    • 10.1128/EC.00354-07, 2224162, 17993568
    • Philpott CC, Protchenko O. Response to iron deprivation in Saccharomyces cerevisiae. Eukaryot Cell 2008, 7(1):20-27. 10.1128/EC.00354-07, 2224162, 17993568.
    • (2008) Eukaryot Cell , vol.7 , Issue.1 , pp. 20-27
    • Philpott, C.C.1    Protchenko, O.2
  • 48
    • 84864320453 scopus 로고    scopus 로고
    • Metabolic remodeling in iron-deficient fungi
    • 10.1016/j.bbamcr.2012.01.012, 22306284
    • Philpott CC, Leidgens S, Frey AG. Metabolic remodeling in iron-deficient fungi. Biochim Biophys Acta 2012, 1823(9):1509-1520. 10.1016/j.bbamcr.2012.01.012, 22306284.
    • (2012) Biochim Biophys Acta , vol.1823 , Issue.9 , pp. 1509-1520
    • Philpott, C.C.1    Leidgens, S.2    Frey, A.G.3
  • 49
    • 77956905091 scopus 로고    scopus 로고
    • AT-1 is the ER membrane acetyl-CoA transporter and is essential for cell viability
    • 2939804, 20826464
    • Jonas MC, Pehar M, Puglielli L. AT-1 is the ER membrane acetyl-CoA transporter and is essential for cell viability. J Cell Sci 2010, 123(Pt 19):3378-3388. 2939804, 20826464.
    • (2010) J Cell Sci , vol.123 , Issue.PART 19 , pp. 3378-3388
    • Jonas, M.C.1    Pehar, M.2    Puglielli, L.3
  • 50
    • 0024256003 scopus 로고
    • Genetic analysis and the construction of master strains for assignment of genes to six linkage groups in Aspergillus niger
    • 10.1007/BF00521266, 3224384
    • Bos CJ, Debets AJ, Swart K, Huybers A, Kobus G, Slakhorst SM. Genetic analysis and the construction of master strains for assignment of genes to six linkage groups in Aspergillus niger. Curr Genet 1988, 14(5):437-443. 10.1007/BF00521266, 3224384.
    • (1988) Curr Genet , vol.14 , Issue.5 , pp. 437-443
    • Bos, C.J.1    Debets, A.J.2    Swart, K.3    Huybers, A.4    Kobus, G.5    Slakhorst, S.M.6
  • 52
    • 0028027806 scopus 로고
    • On Line Growth Measurements in Bioreactors by Titrating Metabolic Proton-Exchange
    • Iversen JJL, Thomsen JK, Cox RP. On Line Growth Measurements in Bioreactors by Titrating Metabolic Proton-Exchange. Appl Microbiol Biotechnol 1994, 42(2-3):256-262.
    • (1994) Appl Microbiol Biotechnol , vol.42 , Issue.2-3 , pp. 256-262
    • Iversen, J.J.L.1    Thomsen, J.K.2    Cox, R.P.3
  • 53
    • 84855906047 scopus 로고    scopus 로고
    • The use of open source bioinformatics tools to dissect transcriptomic data
    • 10.1007/978-1-61779-501-5_19, 22183662
    • Nitsche BM, Ram AF, Meyer V. The use of open source bioinformatics tools to dissect transcriptomic data. Methods Mol Biol 2012, 835:311-331. 10.1007/978-1-61779-501-5_19, 22183662.
    • (2012) Methods Mol Biol , vol.835 , pp. 311-331
    • Nitsche, B.M.1    Ram, A.F.2    Meyer, V.3
  • 55
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3
    • Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004, 3:Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 56
    • 0001677717 scopus 로고
    • Controlling the False Discovery Rate - a Practical and Powerful Approach to Multiple Testing
    • Benjamini Y, Hochberg Y. Controlling the False Discovery Rate - a Practical and Powerful Approach to Multiple Testing. J Roy Stat Soc B 1995, 57(1):289-300.
    • (1995) J Roy Stat Soc B , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 57
    • 33747019547 scopus 로고    scopus 로고
    • Centering, scaling, and transformations: improving the biological information content of metabolomics data
    • 10.1186/1471-2164-7-142, 1534033, 16762068
    • van den Berg RA, Hoefsloot HC, Westerhuis JA, Smilde AK, van der Werf MJ. Centering, scaling, and transformations: improving the biological information content of metabolomics data. BMC Genomics 2006, 7:142. 10.1186/1471-2164-7-142, 1534033, 16762068.
    • (2006) BMC Genomics , vol.7 , pp. 142
    • van den Berg, R.A.1    Hoefsloot, H.C.2    Westerhuis, J.A.3    Smilde, A.K.4    van der Werf, M.J.5
  • 59
    • 0002386913 scopus 로고
    • On the interpretation of X2 from contingency tables, and the calculation of P
    • Fisher RA. On the interpretation of X2 from contingency tables, and the calculation of P. J Roy Stat Soc B 1922, 85(1):87-94.
    • (1922) J Roy Stat Soc B , vol.85 , Issue.1 , pp. 87-94
    • Fisher, R.A.1
  • 60
    • 18744366950 scopus 로고    scopus 로고
    • Cross-species microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora
    • 10.1007/s00438-005-1118-9, 15778868
    • Nowrousian M, Ringelberg C, Dunlap JC, Loros JL, Kuck U. Cross-species microarray hybridization to identify developmentally regulated genes in the filamentous fungus Sordaria macrospora. Mol Genet Genomics 2005, 273(2):137-149. 10.1007/s00438-005-1118-9, 15778868.
    • (2005) Mol Genet Genomics , vol.273 , Issue.2 , pp. 137-149
    • Nowrousian, M.1    Ringelberg, C.2    Dunlap, J.C.3    Loros, J.L.4    Kuck, U.5
  • 61
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • 10.1093/nar/29.9.e45, 55695, 11328886
    • Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001, 29(9):e45. 10.1093/nar/29.9.e45, 55695, 11328886.
    • (2001) Nucleic Acids Res , vol.29 , Issue.9
    • Pfaffl, M.W.1


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