-
1
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R. C., Carey, V. J., Bates, D. M., Bolstad, B., Dettling, M., Dudoit, S., Ellis, B., Gautier, L., Ge, Y., Gentry, J., Hornik, K., Hothorn, T., Huber, W., Iacus, S., Irizarry, R., Leisch, F., Li, C., Maechler, M., Rossini, A. J., Sawitzki, G., Smith, C., Smyth, G., Tierney, L., Yang, J. Y., and Zhang, J. (2004) Bioconductor: open software development for computational biology and bioinformatics Genome Biol 5, R80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.24
Zhang, J.25
more..
-
2
-
-
77955938379
-
Transcriptomic insights into the physiology of Aspergillus niger approaching a specifi c growth rate of zero
-
Jorgensen, T. R., Nitsche, B. M., Lamers, G. E., Arentshorst, M., van den Hondel, C. A., and Ram, A. F. Transcriptomic insights into the physiology of Aspergillus niger approaching a specifi c growth rate of zero Appl Environ Microbiol 76, 5344-55.
-
Appl Environ Microbiol
, vol.76
, pp. 5344-55
-
-
Jorgensen, T.R.1
Nitsche, B.M.2
Lamers, G.E.3
Arentshorst, M.4
Van Den Hondel, C.A.5
Ram, A.F.6
-
3
-
-
33751076794
-
A new group of exo-acting family 28 glycoside hydrolases of Aspergillus niger that are involved in pectin degradation
-
DOI 10.1042/BJ20060703
-
Martens-Uzunova, E. S., Zandleven, J. S., Benen, J. A., Awad, H., Kools, H. J., Beldman, G., Voragen, A. G., Van den Berg, J. A., and Schaap, P. J. (2006) A new group of exo-acting family 28 glycoside hydrolases of Aspergillus niger that are involved in pectin degradation Biochem J 400, 43-52. (Pubitemid 44763818)
-
(2006)
Biochemical Journal
, vol.400
, Issue.1
, pp. 43-52
-
-
Martens-Uzunova, E.S.1
Zandleven, J.S.2
Benen, J.A.E.3
Awad, H.4
Kools, H.J.5
Beldman, G.6
Voragen, A.G.J.7
Van Den Berg, J.A.8
Schaap, P.J.9
-
4
-
-
84863304598
-
R: A language and environment for statistical computing
-
Team R.D.C., Vienna, Austria
-
Team, R. D. C. (2010) R: A language and environment for statistical computing. , R Foundation for Statistical Computing, Vienna, Austria.
-
(2010)
R Foundation for Statistical Computing
-
-
-
5
-
-
1342288026
-
Affy - Analysis of Affymetrix GeneChip data at the probe level
-
DOI 10.1093/bioinformatics/btg405
-
Gautier, L., Cope, L., Bolstad, B. M., and Irizarry, R. A. (2004) affy-analysis of Affymetrix GeneChip data at the probe level Bioinformatics 20, 307-15. (Pubitemid 38262761)
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 307-315
-
-
Gautier, L.1
Cope, L.2
Bolstad, B.M.3
Irizarry, R.A.4
-
7
-
-
33645274977
-
Quality assessment of affymetrix genechip data
-
Springer, New York
-
Bolstad, B. M., Collin, F., Brettschneider, J., Simpson, K., Cope, L., Irizarry, R. A., and Speed, T. P. (2005) Quality Assessment of Affymetrix GeneChip Data. in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor.", Springer, New York.
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
-
-
Bolstad, B.M.1
Collin, F.2
Brettschneider, J.3
Simpson, K.4
Cope, L.5
Irizarry, R.A.6
Speed, T.P.7
-
8
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article3
-
Smyth, G. K. (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments Stat Appl Genet Mol Biol 3, Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
9
-
-
72449150227
-
-
Gentleman, R., Carey, V., Huber, W., and Hahne, F. genefi lter: methods for fi ltering genes from microarray experiments .
-
Genefi Lter: Methods for Fi Ltering Genes from Microarray Experiments
-
-
Gentleman, R.1
Carey, V.2
Huber, W.3
Hahne, F.4
-
10
-
-
79958253275
-
-
Irizarry, R. A., Gautier, L., Huber, W., and Bolstad, B. (2006) makecdfenv: CDF Environment Maker .
-
(2006)
Makecdfenv: CDF Environment Maker
-
-
Irizarry, R.A.1
Gautier, L.2
Huber, W.3
Bolstad, B.4
-
11
-
-
12344280017
-
Summaries of affymetrix genechip probe level data
-
Irizarry, R. A., Bolstad, B. M., Collin, F., Cope, L. M., Hobbs, B., and Speed, T. P. (2003) Summaries of Affymetrix GeneChip probe level data Nucleic Acids Res 31, e15.
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
12
-
-
37649029846
-
DNA hybridization to mismatched templates: A chip study
-
Naef, F., Lim, D. A., Patil, N., and Magnasco, M. (2002) DNA hybridization to mismatched templates: a chip study Phys Rev E Stat Nonlin Soft Matter Phys 65, 040902.
-
(2002)
Phys Rev e Stat Nonlin Soft Matter Phys
, vol.65
, pp. 040902
-
-
Naef, F.1
Lim, D.A.2
Patil, N.3
Magnasco, M.4
-
14
-
-
77953095629
-
Independent fi ltering increases detection power for high-throughput experiments
-
Bourgon, R., Gentleman, R., and Huber, W. Independent fi ltering increases detection power for high-throughput experiments Proc Natl Acad Sci USA 107, 9546-51.
-
Proc Natl Acad Sci USA
, vol.107
, pp. 9546-9551
-
-
Bourgon, R.1
Gentleman, R.2
Huber, W.3
-
15
-
-
0023020183
-
The moderator-mediator variable distinction in social psychological research: Conceptual, strategic, and statistical considerations
-
Baron, R. M., and Kenny, D. A. (1986) The moderator-mediator variable distinction in social psychological research: conceptual, strategic, and statistical considerations J Pers Soc Psychol 51, 1173-82.
-
(1986)
J Pers Soc Psychol
, vol.51
, pp. 1173-1182
-
-
Baron, R.M.1
Kenny, D.A.2
-
16
-
-
70449115789
-
Co-expression tools for plant biology: Opportunities for hypothesis generation and caveats
-
Usadel, B., Obayashi, T., Mutwil, M., Giorgi, F. M., Bassel, G. W., Tanimoto, M., Chow, A., Steinhauser, D., Persson, S., and Provart, N. J. (2009) Co-expression tools for plant biology: opportunities for hypothesis generation and caveats Plant Cell Environ 32, 1633-51.
-
(2009)
Plant Cell Environ
, vol.32
, pp. 1633-1651
-
-
Usadel, B.1
Obayashi, T.2
Mutwil, M.3
Giorgi, F.M.4
Bassel, G.W.5
Tanimoto, M.6
Chow, A.7
Steinhauser, D.8
Persson, S.9
Provart, N.J.10
-
17
-
-
32644439684
-
Comparison of algorithms for the analysis of Affymetrix microarray data as evaluated by co-expression of genes in known operons
-
Harr, B., and Schlotterer, C. (2006) Comparison of algorithms for the analysis of Affymetrix microarray data as evaluated by co-expression of genes in known operons Nucleic Acids Res 34, e8.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Harr, B.1
Schlotterer, C.2
-
18
-
-
34547830867
-
Comparative analysis of microarray normalization procedures: Effects on reverse engineering gene networks
-
DOI 10.1093/bioinformatics/btm201
-
Lim, W. K., Wang, K., Lefebvre, C., and Califano, A. (2007) Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks Bioinformatics 23, i282-8. (Pubitemid 47244411)
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Lim, W.K.1
Wang, K.2
Lefebvre, C.3
Califano, A.4
-
20
-
-
57149094101
-
-
Springer, Verlag
-
Hahne, F., Huber, W., Gentleman, R., and Falcon, S. (2008) Bioconductor case studies , Springer Verlag.
-
(2008)
Bioconductor Case Studies
-
-
Hahne, F.1
Huber, W.2
Gentleman, R.3
Falcon, S.4
-
21
-
-
0242490780
-
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
-
DOI 10.1101/gr.1239303
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., and Ideker, T. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks Genome Res 13, 2498-504. (Pubitemid 37428274)
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
22
-
-
2942552459
-
An automated method for fi nding molecular complexes in large protein interaction networks
-
Bader, G. D., and Hogue, C. W. (2003) An automated method for fi nding molecular complexes in large protein interaction networks BMC Bioinformatics 4, 2.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
23
-
-
24044440971
-
BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
-
DOI 10.1093/bioinformatics/bti551
-
Maere, S., Heymans, K., and Kuiper, M. (2005) BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks Bioinformatics 21, 3448-9. (Pubitemid 41222459)
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
|