-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
2
-
-
0037007223
-
Structure of the RPA trimerization core and its role in the multistep DNA-binding mechanism of RPA
-
Bochkareva, E. et al. (2002) Structure of the RPA trimerization core and its role in the multistep DNA-binding mechanism of RPA. EMBO J., 21, 1855-1863.
-
(2002)
EMBO J
, vol.21
, pp. 1855-1863
-
-
Bochkareva, E.1
-
3
-
-
74549151848
-
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms
-
Boyer, M. et al. (2009) Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc. Natl Acad. Sci. USA, 106, 21848-21853.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 21848-21853
-
-
Boyer, M.1
-
4
-
-
0037007224
-
Structure of small protein B: The protein component of the tmRNA-SmpB system for ribosome rescue
-
Dong, G. et al. (2002) Structure of small protein B: the protein component of the tmRNA-SmpB system for ribosome rescue. EMBO J., 21, 1845-1854.
-
(2002)
EMBO J
, vol.21
, pp. 1845-1854
-
-
Dong, G.1
-
5
-
-
80055082271
-
Accelerated profile HMM searches
-
Eddy, S.R. (2011) Accelerated Profile HMM Searches. PLoS Comput. Biol., 7, e1002195.
-
(2011)
PLoS Comput. Biol
, vol.7
-
-
Eddy, S.R.1
-
6
-
-
10044222704
-
CLANS: A Java application for visualizing protein families based on pairwise similarity
-
Frickey, T. and Lupas, A. (2004) CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics, 20, 3702-3704.
-
(2004)
Bioinformatics
, vol.20
, pp. 3702-3704
-
-
Frickey, T.1
Lupas, A.2
-
7
-
-
66149100382
-
The 30-to-50 exonuclease activity of vaccinia virus DNA polymerase is essential and plays a role in promoting virus genetic recombination
-
Gammon, D.B. and Evans, D.H. (2009) The 30-to-50 exonuclease activity of vaccinia virus DNA polymerase is essential and plays a role in promoting virus genetic recombination. J. Virol., 83, 4236-4250.
-
(2009)
J. Virol
, vol.83
, pp. 4236-4250
-
-
Gammon, D.B.1
Evans, D.H.2
-
8
-
-
84863600778
-
Molecular genetic and biochemical characterization of the vaccinia virus I3 protein, the replicative single-stranded DNA binding protein
-
Greseth, M.D. et al. (2012) Molecular genetic and biochemical characterization of the vaccinia virus I3 protein, the replicative single-stranded DNA binding protein. J. Virol., 86, 6197-6209.
-
(2012)
J. Virol
, vol.86
, pp. 6197-6209
-
-
Greseth, M.D.1
-
9
-
-
0041737720
-
Crystal structure of the transfer-RNA domain of transfermessenger RNA in complex with SmpB
-
Gutmann, S. et al. (2003) Crystal structure of the transfer-RNA domain of transfermessenger RNA in complex with SmpB. Nature, 424, 699-703.
-
(2003)
Nature
, vol.424
, pp. 699-703
-
-
Gutmann, S.1
-
10
-
-
0037470236
-
The DNA binding domain of the gene 2.5 singlestranded DNA-binding protein of bacteriophage T7
-
Hyland, E.M. et al. (2003) The DNA binding domain of the gene 2.5 singlestranded DNA-binding protein of bacteriophage T7. J. Biol. Chem., 278, 7247-7256.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 7247-7256
-
-
Hyland, E.M.1
-
11
-
-
0035167322
-
Common origin of four diverse families of large eukaryotic DNA viruses
-
Iyer, L.M. et al. (2001) Common origin of four diverse families of large eukaryotic DNA viruses. J. Virol., 75, 11720-11734.
-
(2001)
J. Virol
, vol.75
, pp. 11720-11734
-
-
Iyer, L.M.1
-
12
-
-
33645076499
-
Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
-
Iyer, L.M. et al. (2006) Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Virus Res., 117, 156-184.
-
(2006)
Virus Res
, vol.117
, pp. 156-184
-
-
Iyer, L.M.1
-
13
-
-
0028018381
-
Acidic carboxyl-terminal domain of gene 2.5 protein of bacteriophage T7 is essential for protein-protein interactions
-
Kim, Y.T. and Richardson, C.C. (1994) Acidic carboxyl-terminal domain of gene 2.5 protein of bacteriophage T7 is essential for protein-protein interactions. J. Biol. Chem., 269, 5270-5278.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 5270-5278
-
-
Kim, Y.T.1
Richardson, C.C.2
-
14
-
-
77953692396
-
Origin and evolution of eukaryotic large nucleo-cytoplasmic DNA viruses
-
Koonin, E.V. and Yutin, N. (2010) Origin and evolution of eukaryotic large nucleo-cytoplasmic DNA viruses. Intervirology, 53, 284-292.
-
(2010)
Intervirology
, vol.53
, pp. 284-292
-
-
Koonin, E.V.1
Yutin, N.2
-
15
-
-
77951857386
-
MRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus
-
Legendre, M. et al. (2010) mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus. Genome Res., 20, 664-674.
-
(2010)
Genome Res
, vol.20
, pp. 664-674
-
-
Legendre, M.1
-
16
-
-
68549134924
-
Transcriptome analysis of Frog virus 3, the type species of the genus Ranavirus, family Iridoviridae
-
Majji, S. et al. (2009) Transcriptome analysis of Frog virus 3, the type species of the genus Ranavirus, family Iridoviridae. Virology, 391, 293-303.
-
(2009)
Virology
, vol.391
, pp. 293-303
-
-
Majji, S.1
-
17
-
-
33748754047
-
Essential residues in the C terminus of the bacteriophage T7 gene 2.5 single-stranded DNA-binding protein
-
Marintcheva, B. et al. (2006) Essential residues in the C terminus of the bacteriophage T7 gene 2.5 single-stranded DNA-binding protein. J. Biol. Chem., 281, 25831-25840.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 25831-25840
-
-
Marintcheva, B.1
-
18
-
-
0027479161
-
OB(oligonucleotide/oligosaccharide binding)-fold: Common structural and functional solution for non-homologous sequences
-
Murzin, A.G. (1993) OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences. EMBO J., 12, 861-867.
-
(1993)
EMBO J
, vol.12
, pp. 861-867
-
-
Murzin, A.G.1
-
19
-
-
84863142936
-
Displacement of the canonical single-stranded DNAbinding protein in the Thermoproteales
-
Paytubi, S. et al. (2012) Displacement of the canonical single-stranded DNAbinding protein in the Thermoproteales. Proc. Natl Acad. Sci. USA, 109, E398-E405.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
-
-
Paytubi, S.1
-
20
-
-
0031009811
-
Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined by multiwavelength X-ray diffraction on the selenomethionyl protein at 2.9-A resolution
-
Raghunathan, S. et al. (1997) Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined by multiwavelength X-ray diffraction on the selenomethionyl protein at 2.9-A resolution. Proc. Natl Acad. Sci. USA, 94, 6652-6657.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6652-6657
-
-
Raghunathan, S.1
-
21
-
-
0031949939
-
Characterization of the single-stranded DNA binding protein encoded by the vaccinia virus I3 gene
-
Rochester, S.C. and Traktman, P. (1998) Characterization of the single-stranded DNA binding protein encoded by the vaccinia virus I3 gene. J. Virol., 72, 2917-2926.
-
(1998)
J. Virol
, vol.72
, pp. 2917-2926
-
-
Rochester, S.C.1
Traktman, P.2
-
22
-
-
16344373015
-
Protein homology detection by HMM-HMM comparison
-
Sö ding, J. (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics 21 951-960.
-
(2005)
Bioinformatics
, vol.21
, pp. 951-960
-
-
Söding, J.1
-
23
-
-
0028225239
-
Crystal structure of the adenovirus DNA binding protein reveals a hook-on model for cooperative DNA binding
-
Tucker, P.A. et al. (1994) Crystal structure of the adenovirus DNA binding protein reveals a hook-on model for cooperative DNA binding. EMBO J., 13, 2994-3002.
-
(1994)
EMBO J
, vol.13
, pp. 2994-3002
-
-
Tucker, P.A.1
-
24
-
-
74249106002
-
The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins
-
Venclovas, C. andMargelevicius, M. (2009) The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins. Proteins, 77 (Suppl. 9), 81-88.
-
(2009)
Proteins
, vol.77
, Issue.SUPPL. 9
, pp. 81-88
-
-
Venclovas, C.1
Margelevicius, M.2
-
25
-
-
34547566446
-
ProSA-web: Interactive web service for the recognition of errors in three-dimensional structures of proteins
-
Wiederstein, M. and Sippl, M.J. (2007) ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Res., 35, W407-W410.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Wiederstein, M.1
Sippl, M.J.2
-
26
-
-
60749095404
-
Mutagenesis identifies the critical regions and amino acid residues of suid herpesvirus 1 DNA-binding protein required for DNA binding and strand invasion
-
Wu, S.L. et al. (2009) Mutagenesis identifies the critical regions and amino acid residues of suid herpesvirus 1 DNA-binding protein required for DNA binding and strand invasion. Virus Res., 140, 147-154.
-
(2009)
Virus Res
, vol.140
, pp. 147-154
-
-
Wu, S.L.1
-
27
-
-
72849113546
-
Microarray analysis of Paramecium bursaria chlorella virus 1 transcription
-
Yanai-Balser, G.M. et al. (2010) Microarray analysis of Paramecium bursaria chlorella virus 1 transcription. J. Virol., 84, 532-542.
-
(2010)
J. Virol
, vol.84
, pp. 532-542
-
-
Yanai-Balser, G.M.1
-
28
-
-
74549198854
-
Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution
-
Yutin, N. et al. (2009) Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution. Virol. J., 6, 223.
-
(2009)
Virol. J
, vol.6
, pp. 223
-
-
Yutin, N.1
|