Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined by multiwavelength x-ray diffraction on the selenomethionyl protein at 2.9-Å resolution

Proceedings of the National Academy of Sciences of the United States of America

Volumn 94, Issue 13, 1997, Pages 6652-6657

  Raghunathan, Srinivasan ^a   Ricard, Cynthia S ^a   Lohman, Timothy M ^a   Waksman, Gabriel ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

DNA replication; Helix destabilizing; X ray crystal structure

Indexed keywords

AMINO ACID; DIMER; DNA BINDING PROTEIN; OLIGOMER; PROTEIN; SINGLE STRANDED DNA;

AMINO ACID SEQUENCE; ARTICLE; CRYSTAL STRUCTURE; DNA BINDING; DNA REPLICATION; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; X RAY DIFFRACTION;

AMINO ACID SEQUENCE; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; DNA, SINGLE-STRANDED; DNA-BINDING PROTEINS; ESCHERICHIA COLI; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION;

ESCHERICHIA COLI;

EID: 0031009811     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.94.13.6652     Document Type: Article

References (54)

1. Sigal, N., Delius, H., Kornberg, T., Gefter, M. L. & Alberts, B. M. (1972) Proc. Natl. Acad. Sci. USA 69, 3537-3541.
2. Alberts, B. M. & Frey, L. (1970) Nature (London) 227, 1313-1318.
3. Meyer, R. R. & Laine, P. S. (1990) Microbiol. Rev. 54, 342-380.
4. Chase, J. W. & Williams, K. R. (1986) Annu. Rev. Biochem. 55, 103-136.
5. Lohman, T. M. & Ferrari, M. E. (1994) Annu. Rev. Biochem. 63, 527-570.
6. Lohman, T. M., Bujalowski, W. & Overman, L. B. (1988) Trends Biochem. Sci. 13, 250-255.
7. Williams, K. R., Murphy, J. B. & Chase, J. W. (1984) J. Biol. Chem. 259, 11804-11811.
8. Lohman, T. M. & Overman, L. B. (1985) J. Biol. Chem. 260, 3594-3603.
9. Bujalowski, W. & Lohman, T. M. (1986) Biochemistry 25, 7799-7802.
10. Griffith, J. D., Harris, L. D. & Register, J. (1984) Cold Spring Harbor Symp. Quant. Biol. 49, 553-559.
11. Bujalowski, W. & Lohman, T. M. (1989) J. Mol. Biol. 207, 249-268.
12. Bujalowski, W. & Lohman, T. M. (1989) J. Mol. Biol. 207, 269-288.
13. Krauss, G., Sindermann, H., Schomburg, U. & Maass, G. (1981) Biochemistry 20, 5346-5352.
14. Chrysogelos, S. & Griffith, J. (1982) Proc. Natl. Acad. Sci. USA 79, 5803- 5807.
15. Lohman, T. M., Overman, L. B. & Datta, S. (1986) J. Mol. Biol. 187, 603-615.
16. Bujalowski, W. & Lohman, T. M. (1987) J. Mol. Biol. 195, 897-907.
17. Sancar, A., Williams, K. R., Chase, J. W. & Rupp, W. D. (1981) Proc. Natl. Acad. Sci. USA 78, 4274-4278.
18. Williams, K. R., Spicer, E. K., LoPresti, M. B., Guggenheimer, R. A. & Chase, J. W. (1983) J. Biol. Chem. 258, 3346-3355.
19. Curth, U., Urbanke, C., Greipel, J., Gerberding, H., Tiranti, V. & Zeviani, M. (1994) Eur. J. Biochem. 221, 435-443.
20. Yang, C., Curth, U., Urbanke, C. & Kang, C. (1997) Nat. Struct. Biol. 4, 153-157.
21. Ollis, D., Brick, P., Abdel-Meguid, S. S., Murthy, K., Chase, J. W. & Steitz, T. A. (1983) J. Mol. Biol. 170, 797-801.
22. Monzingo, A. F. & Christiansen, C. (1983) J. Mol. Biol. 170, 801.
23. Hilgenfeld, R., Saenger, W., Schomburg, U. & Krauss, G. (1984) FEBS Lett. 170, 143-146.
24. Ng, J. D. & McPherson, A. (1989) J. Biomol. Struct. Dynam. 6, 1071-1076.
25. Thorn, J. M., Carr, P. D., Chase, J. W., Dixon, N. E. & Ollis, D. (1994) J. Mol. Biol. 240, 396-399.
26. Lohman, T. M., Green, J. M. & Beyer, R. S. (1986) Biochemistry 25, 21-25.
27. Yang, W., Hendrickson, W. A., Kalman, E. T. & Crouch, R. J. (1990) J. Biol. Chem. 265, 13553-13559.
28. Otwinowski, Z. (1993) in Proceedings of the CCP4 Study Weekend: Data Collection and Processing, eds. Sawyers, L., Isaacs, N. & Bailey, S. (SERC Daresbury Lab., Warrington, U.K.), pp. 56-62.
29. Terwilliger, T. C. & Eisenberg, D. (1983) Acta Crystallogr. A 39, 813-817.
30. Terwilliger, T. C. (1994) Acta Crystallogr. D 50, 11-16.
31. Hall, T. M. T., Porter, J. A., Beachy, P. A. & Leahy, D. J. (1995) Nature (London) 378, 212- 216.
32. Terwilliger, T. C., Kim, S.-H. & Eisenberg, D. (1987) Acta Crystallogr. A 43, 1-5.
33. Terwilliger, T. C. (1994) Acta Crystallogr. D 50, 17-23.
34. CCP4 (1994) Acta Crystallogr. D 50, 760-763.
35. Jones, T. A. & Thirup, S. (1986) EMBO J. 5, 819-822.
36. Read, R. (1986) Acta Crystallogr. A 42, 140-149.
37. Brünger, A. (1988) X-PLOR Manual (Yale Univ., New Haven, CT), Version 2.2.
38. Engh, R. A. & Huber, R. (1991) Acta Crystallogr. A 47, 392-400.
39. Brünger, A. T. (1988) J. Mol. Biol. 203, 803-816.
40. Ramachandran, G. N. & Sasisekharan, V. (1968) Adv. Protein Chem. 23, 283-437.
41. Murzin, A. G. (1993) EMBO J. 12, 861-867.
42. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
43. Janin, J. & Chothia, C. (1990) J. Biol. Chem. 265, 16027-16030.
44. Bujalowski, W. & Lohman, T. M. (1991) J. Biol. Chem. 266, 1616-1626.
45. Carlini, L. E. (1994) Ph.D. thesis (Pennsylvania State Univ., University Park).
46. Curth, U., Greipel, J., Urbanke, C. & Maass, G. (1993) Biochemistry 32, 2585- 2591.
47. Anderson, R. A. & Coleman, J. E. (1975) Biochemistry 14, 5485-5491.
48. Overman, L. B., Bujalowski, W. & Lohman, T. M. (1988) Biochemistry 27, 456-471.
49. Khamis, M. I., Casas-Finet, J. R., Maki, A. H., Murphy, J. B. & Chase, J. W. (1987) J. Biol. Chem. 262, 10938-10945.
50. Casas-Finet, J. R., Khamis, M. I., Maki, A. H. & Chase, J. W. (1987) FEBS Lett. 220, 347-352.
51. Merrill, B. M., Williams, K. R., Chase, J. W. & Konigsberg, W. H. (1984) J. Biol. Chem. 259, 10850-10856.
52. Nicholls, A., Sharp, K. A. & Honig, B. (1991) Protein Struct. Funct. Genet. 11, 281-296.
53. Bochkarev, A., Pfuetzner, R. A., Edwards, A. M. & Frappier, L. (1997) Nature (London) 385, 176-181.
54. Ruff, M., Krishnaswany, S., Boeglin, M., Poterszman, A., Mitschler, A., Podjarny, A., Rees, B., Thierry, J. C. & Moras, D. (1991) Science 252, 1682-1689.