Dynamics of biological molecules irradiated by short x-ray pulses

Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics

Volumn 69, Issue 5, 2004, Pages 12-

  Hau Riege, Stefan P ^a   London, Richard A ^a   Szoke, Abraham ^a  

^a LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84856006636     PISSN: 1063651X     EISSN: None     Source Type: Journal    
DOI: 10.1103/PhysRevE.69.051906     Document Type: Article

References (30)

1. R. Neutze, W. Wouts, D. van der Spoel, E. Weckert, and J. Hajdu, Nature (London)NATUAS0028-083610.1038/35021099 406, 752 (2000).
2. R. Henderson, Q. Rev. Biophys.QURBAW0033-5835 28, 171 (1995).
3. J. Arthur, Linac Coherent Light Source (LCLS) Design Study Report No. SLAC-R-521, 1998 (unpublished), also available online at: http://www-ssrl.slac.stanford.edu/lcls/design_report/e-toc.html
4. J. C. Solem and G. F. Chapline, Opt. Eng.OPEGAR0091-3286 23, 193 (1984).
5. J. C. Solem and G. C. Baldwin, ScienceSCIEAS0036-8075 218, 229 (1982).
6. Ya. S. Derbenev, A. M. Kondratenko, and E. L. Saldin, Nucl. Instrum. Methods Phys. Res.NIMRD90167-508710.1016/0029-554X(82)90233-6 A193, 415 (1982).
7. J. B. Murphy and C. Pellegrini, J. Opt. Soc. Am. BJOBPDE0740-3224 2, 259 (1985).
8. R. F. Service, ScienceSCIEAS0036-807510.1126/science.298.5597.1356 298, 1356 (2002).
9. F. Richard, J. R. Schneider, D. Trines, and A. Wagner, TESLA Technical Design Report No. 2001-11, 2001 (unpublished), available at the web site http://tesla.desy.de/new_pages/TDR_CD /start.html.
10. G. Huldt, A. Szoke, and J. Hajdu, J. Struct. Biol.JSBIEM1047-847710.1016/j.jsb.2003.09.025 144, 219 (2003).
11. R. Gerchberg and W. Saxton, Optik (Jena)OTIKAJ0030-4026 35, 237 (1972).
12. S. P. Hau-Riege, H. Szoke, H. Chapman, A. Szoke, S. Marchesini, A. Noy, H. He, M. Howells, U. Weierstall, and J. C.H. Spence, Acta Cryst. A (to be published).
13. Z. Jurek, G. Faigel, and M. Tegze, Phys. Rev. BPRBMDO0163-1829 (to be published);
14. Z. Jurek, G. Oszlanyi, and G. Faigel, Europhys. Lett.EULEEJ0295-507565, 491 (2004).
15. E. J. McGuire, Phys. Rev.PHRVAO0031-899X10.1103/PhysRev.185.1 185, 1 (1969).
16. D. A. Verner, D. G. Yakovlev, I. M. Band, and M. B. Trzhaskovskaya, At. Data Nucl. Data TablesADNDAT0092-640X10.1006/adnd.1993.1022 55, 233 (1993).
17. B. Ziaja, A. Szoke, D. van der Spoel, and J. Hajdu, Phys. Rev. BPRBMDO0163-1829 66, 24?116 (2002).
18. B. L. Henke, E. M. Gullikson, and J. C. Davis, At. Data Nucl. Data TablesADNDAT0092-640X10.1006/adnd.1993.1013 54, 181 (1993).
19. M. A. Lennon, K. L. Bell, H. B. Gilbody, J. G. Hughes, A. E. Kingston, M. J. Murray, and F. J. Smith, J. Phys. Chem. Ref. DataJPCRBU0047-2689 17, 1285 (1988).
20. K. L. Bell, H. B. Gilbody, J. G. Hughes, A. E. Kingston, and F. J. Smith, J. Phys. Chem. Ref. DataJPCRBU0047-2689 12, 891 (1983).
21. Y.-K. Kim and M. E. Rudd, Phys. Rev. APLRAAN1050-294710.1103/PhysRevA.50.3954 50, 3954 (1983).
22. S. Chelkowski and A. D. Bandruk, J. Phys. BJPAPEH0953-407510.1088/0953-4075/28/23/004 28, L723 (1995).
23. B. Ziaja, A. Szoke, R. A. London, and J. Hajdu.
24. R. D. Richtmyer and K. W. Morton, Difference Methods for Initial-Value Problems, 2nd ed. (Krieger Publishing, Melbourne, 1994).
25. J. von Neumann and R. D. Richtmyer, J. Appl. Phys.JAPIAU0021-897910.1063/1.1699639 21, 232 (1950).
26. E. J. Caramana, M. J. Shahkov, and P. P. Whalen, J. Comput. Phys.JCTPAH0021-999110.1006/jcph.1998.5989 144, 70 (1998).
27. R. Courant, K. O. Friedrichs, and H. Lewy, Math. Ann.MAANA30025-5831 100, 32 (1928).
28. W. H. Press, B. P. Flannery, S. A. Teukolsky, and W. T. Vetterling, Numerical Recipes in C, 2nd Ed. (Cambridge University Press, Cambridge, 1993).
29. H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne, Nucleic Acids Res.NARHAD0305-104810.1093/nar/28.1.235 28, 235 (2000).
30. H. R. Griem, Principles of Plasma Spectroscopy (Cambridge University Press, Cambridge 1997), p. 167–172.