Argonautes compete for miR165/166 to regulate shoot apical meristem development

Current Opinion in Plant Biology

Volumn 15, Issue 6, 2012, Pages 652-658

  Zhang, Zhonghui ^a   Zhang, Xiuren ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGO1 PROTEIN, ARABIDOPSIS; AGO10 PROTEIN, ARABIDOPSIS; ARABIDOPSIS PROTEIN; ARGONAUTE PROTEIN; HD ZIP PROTEIN, ARABIDOPSIS; HD-ZIP PROTEIN, ARABIDOPSIS; HOMEODOMAIN PROTEIN; MICRORNA; PLANT RNA; RNA BINDING PROTEIN;

ARABIDOPSIS; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MERISTEM; METABOLISM; PLANT; PLANT CELL; PLANT GENE; PROTEIN TERTIARY STRUCTURE; REVIEW;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; ARGONAUTE PROTEINS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; HOMEODOMAIN PROTEINS; MERISTEM; MICRORNAS; PLANT CELLS; PLANT SHOOTS; PROTEIN STRUCTURE, TERTIARY; RNA, PLANT; RNA-BINDING PROTEINS; TRANSCRIPTION, GENETIC;

EID: 84870505179     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbi.2012.05.007     Document Type: Review

References (54)

1. Czech B., Hannon G.J. Small RNA sorting: matchmaking for Argonautes. Nat Rev Genet 2011, 12:19-31.
2. Wang Y., Juranek S., Li H., Sheng G., Wardle G.S., Tuschl T., Patel D.J. Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes. Nature 2009, 461:754-761.
3. Liu J., Carmell M.A., Rivas F.V., Marsden C.G., Thomson J.M., Song J.J., Hammond S.M., Joshua-Tor L., Hannon G.J. Argonaute2 is the catalytic engine of mammalian RNAi. Science 2004, 305:1437-1441.
4. Mi S., Cai T., Hu Y., Chen Y., Hodges E., Ni F., Wu L., Li S., Zhou H., Long C., et al. Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. Cell 2008, 133:116-127.
5. Wang H., Zhang X., Liu J., Kiba T., Woo J., Ojo T., Hafner M., Tuschl T., Chua N.H., Wang X.J. Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions. Plant J 2011, 67:292-304.
6. Mallory A., Vaucheret H. Form, function, and regulation of ARGONAUTE proteins. Plant Cell 2010, 22:3879-3889.
7. Takeda A., Iwasaki S., Watanabe T., Utsumi M., Watanabe Y. The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins. Plant Cell Physiol 2008, 49:493-500.
8. Wei W., Ba Z., Gao M., Wu Y., Ma Y., Amiard S., White C.I., Danielsen J.M., Yang Y.G., Qi Y. A role for small RNAs in DNA double-strand break repair. Cell 2012, 149:101-112.
9. Wang X.B., Jovel J., Udomporn P., Wang Y., Wu Q., Li W.X., Gasciolli V., Vaucheret H., Ding S.W. The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana. Plant Cell 2011, 23:1625-1638.
10. Zhang X., Zhao H., Gao S., Wang W.C., Katiyar-Agarwal S., Huang H.D., Raikhel N., Jin H. Arabidopsis Argonaute 2 regulates innate immunity via miRNA393(*)-mediated silencing of a Golgi-localized SNARE gene. MEMB12. Mol Cell 2011, 42:356-366.
11. Harvey J.J., Lewsey M.G., Patel K., Westwood J., Heimstadt S., Carr J.P., Baulcombe D.C. An antiviral defense role of AGO2 in plants. PLoS ONE 2011, 6:e14639.
12. Montgomery T.A., Howell M.D., Cuperus J.T., Li D., Hansen J.E., Alexander A.L., Chapman E.J., Fahlgren N., Allen E., Carrington J.C. Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell 2008, 133:128-141.
13. Havecker E.R., Wallbridge L.M., Hardcastle T.J., Bush M.S., Kelly K.A., Dunn R.M., Schwach F., Doonan J.H., Baulcombe D.C. The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell 2010, 22:321-334.
14. Olmedo-Monfil V., Duran-Figueroa N., Arteaga-Vazquez M., Demesa-Arevalo E., Autran D., Grimanelli D., Slotkin R.K., Martienssen R.A., Vielle-Calzada J.P. Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature 2010, 464:628-632.
15. Lynn K., Fernandez A., Aida M., Sedbrook J., Tasaka M., Masson P., Barton M.K. The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene. Development 1999, 126:469-481.
16. Moussian B., Schoof H., Haecker A., Jurgens G., Laux T. Role of the ZWILLE gene in the regulation of central shoot meristem cell fate during Arabidopsis embryogenesis. EMBO J 1998, 17:1799-1809.
17. Ariel F.D., Manavella P.A., Dezar C.A., Chan R.L. The true story of the HD-Zip family. Trends Plant Sci 2007, 12:419-426.
18. Mukherjee K., Burglin T.R. MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins. Plant Physiol 2006, 140:1142-1150.
19. Magnani E., Barton M.K. A per-ARNT-sim-like sensor domain uniquely regulates the activity of the homeodomain leucine zipper transcription factor REVOLUTA in Arabidopsis. Plant Cell 2011, 23:567-582.
20. Byrne M.E. Shoot meristem function and leaf polarity: the role of class III HD-ZIP genes. PLoS Genet 2006, 2:e89.
21. Prigge M.J., Otsuga D., Alonso J.M., Ecker J.R., Drews G.N., Clark S.E. Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell 2005, 17:61-76.
22. Talbert P.B., Adler H.T., Parks D.W., Comai L. The REVOLUTA gene is necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana. Development 1995, 121:2723-2735.
23. McConnell J.R., Emery J., Eshed Y., Bao N., Bowman J., Barton M.K. Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 2001, 411:709-713.
24. Green K.A., Prigge M.J., Katzman R.B., Clark S.E. CORONA, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis. Plant Cell 2005, 17:691-704.
25. Williams L., Grigg S.P., Xie M., Christensen S., Fletcher J.C. Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development 2005, 132:3657-3668.
26. Otsuga D., DeGuzman B., Prigge M.J., Drews G.N., Clark S.E. REVOLUTA regulates meristem initiation at lateral positions. Plant J 2001, 25:223-236.
27. Baima S., Possenti M., Matteucci A., Wisman E., Altamura M.M., Ruberti I., Morelli G. The arabidopsis ATHB-8 HD-zip protein acts as a differentiation-promoting transcription factor of the vascular meristems. Plant Physiol 2001, 126:643-655.
28. Kim Y.S., Kim S.G., Lee M., Lee I., Park H.Y., Seo P.J., Jung J.H., Kwon E.J., Suh S.W., Paek K.H., et al. HD-ZIP III activity is modulated by competitive inhibitors via a feedback loop in Arabidopsis shoot apical meristem development. Plant Cell 2008, 20:920-933.
29. Wenkel S., Emery J., Hou B.H., Evans M.M., Barton M.K. A feedback regulatory module formed by LITTLE ZIPPER and HD-ZIP III genes. Plant Cell 2007, 19:3379-3390.
30. Mallory A.C., Reinhart B.J., Jones-Rhoades M.W., Tang G., Zamore P.D., Barton M.K., Bartel D.P. MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region. EMBO J 2004, 23:3356-3364.
31. Liu Q., Yao X., Pi L., Wang H., Cui X., Huang H. The ARGONAUTE10 gene modulates shoot apical meristem maintenance and establishment of leaf polarity by repressing miR165/166 in Arabidopsis. Plant J 2009, 58:27-40.
32. Yao X., Wang H., Li H., Yuan Z., Li F., Yang L., Huang H. Two types of cis-acting elements control the abaxial epidermis-specific transcription of the MIR165a and MIR166a genes. FEBS Lett 2009, 583:3711-3717.
33. Barton M.K. Twenty years on: the inner workings of the shoot apical meristem, a developmental dynamo. Dev Biol 2010, 341:95-113.
34. Emery J.F., Floyd S.K., Alvarez J., Eshed Y., Hawker N.P., Izhaki A., Baum S.F., Bowman J.L. Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes. Curr Biol 2003, 13:1768-1774.
35. Kim J., Jung J.H., Reyes J.L., Kim Y.S., Kim S.Y., Chung K.S., Kim J.A., Lee M., Lee Y., Narry Kim V., et al. microRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems. Plant J 2005, 42:84-94.
36. Zhou G.K., Kubo M., Zhong R., Demura T., Ye Z.H. Overexpression of miR165 affects apical meristem formation, organ polarity establishment and vascular development in Arabidopsis. Plant Cell Physiol 2007, 48:391-404.
37. Jung J.H., Park C.M. MIR166/165 genes exhibit dynamic expression patterns in regulating shoot apical meristem and floral development in Arabidopsis. Planta 2007, 225:1327-1338.
38. Kidner C.A., Martienssen R.A. Spatially restricted microRNA directs leaf polarity through ARGONAUTE1. Nature 2004, 428:81-84.
39. Kidner C.A., Martienssen R.A. The role of ARGONAUTE1 (AGO1) in meristem formation and identity. Dev Biol 2005, 280:504-517.
40. Mallory A.C., Hinze A., Tucker M.R., Bouche N., Gasciolli V., Elmayan T., Lauressergues D., Jauvion V., Vaucheret H., Laux T. Redundant and specific roles of the ARGONAUTE proteins AGO1 and ZLL in development and small RNA-directed gene silencing. PLoS Genet 2009, 5:e1000646.
41. Zhu H., Hu F., Wang R., Zhou X., Sze S.H., Liou L.W., Barefoot A., Dickman M., Zhang X. Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development. Cell 2011, 145:242-256.
42. Tomari Y., Du T., Zamore P.D. Sorting of Drosophila small silencing RNAs. Cell 2007, 130:299-308.
43. Forstemann K., Horwich M.D., Wee L., Tomari Y., Zamore P.D. Drosophila microRNAs are sorted into functionally distinct argonaute complexes after production by dicer-1. Cell 2007, 130:287-297.
44. Steiner F.A., Hoogstrate S.W., Okihara K.L., Thijssen K.L., Ketting R.F., Plasterk R.H., Sijen T. Structural features of small RNA precursors determine Argonaute loading in Caenorhabditis elegans. Nat Struct Mol Biol 2007, 14:927-933.
45. Ji L., Liu X., Yan J., Wang W., Yumul R.E., Kim Y.J., Dinh T.T., Liu J., Cui X., Zheng B., et al. ARGONAUTE10 and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis. PLoS Genet 2011, 7:e1001358.
46. Tucker M.R., Hinze A., Tucker E.J., Takada S., Jurgens G., Laux T. Vascular signalling mediated by ZWILLE potentiates WUSCHEL function during shoot meristem stem cell development in the Arabidopsis embryo. Development 2008, 135:2839-2843.
47. Brodersen P., Sakvarelidze-Achard L., Bruun-Rasmussen M., Dunoyer P., Yamamoto Y.Y., Sieburth L., Voinnet O. Widespread translational inhibition by plant miRNAs and siRNAs. Science 2008, 320:1185-1190.
48. Bazzini A.A., Lee M.T., Giraldez A.J. Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish. Science 2012, 336:233-237.
49. Djuranovic S., Nahvi A., Green R. miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay. Science 2012, 336:237-240.
50. Carlsbecker A., Lee J.Y., Roberts C.J., Dettmer J., Lehesranta S., Zhou J., Lindgren O., Moreno-Risueno M.A., Vaten A., Thitamadee S., et al. Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature 2010, 465:316-321.
51. Chitwood D.H., Timmermans M.C. Small RNAs are on the move. Nature 2010, 467:415-419.
52. McConnell J.R., Barton M.K. Effect of mutations in the pinhead gene of Arabidopsis on the formation of shoot apical meristems. Dev Genet 1995, 16:358-366.
53. Tay Y., Kats L., Salmena L., Weiss D., Tan S., Ala U., Karreth F., Poliseno L., Provero P., Cunto F., et al. Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs. Cell 2011, 147:344-357.
54. Rubio-Somoza I., Weigel D., Franco-Zorilla J., Garci{dotless}óa J., Paz-Ares J. ceRNAs: miRNA target mimic mimics. Cell 2011, 147:143.