HD-ZIP III activity is modulated by competitive inhibitors via a feedback loop in Arabidopsis shoot apical meristem development

Plant Cell

Volumn 20, Issue 4, 2008, Pages 920-933

  Kim, Youn Sung ^a   Kim, Sang Gyu ^a   Lee, Minsun ^a   Lee, Ilha ^b   Park, Hye Young ^a   Pil, Joon Seo ^a   Jung, Jae Hoon ^a   Kwon, Eun Jung ^a   Se, Won Suh ^a   Paek, Kyung Hee ^c   Park, Chung Mo ^a  

^a Seoul National University   (South Korea)

^b Seoul National University   (South Korea)

^c Korea University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS;

ARABIDOPSIS PROTEIN; HD ZIP PROTEIN, ARABIDOPSIS; HD-ZIP PROTEIN, ARABIDOPSIS; HOMEODOMAIN PROTEIN; MESSENGER RNA;

ARABIDOPSIS; ARTICLE; CHEMISTRY; DIMERIZATION; DRUG EFFECT; FEEDBACK SYSTEM; GENETICS; GROWTH, DEVELOPMENT AND AGING; IN SITU HYBRIDIZATION; MERISTEM; PHYSIOLOGY; SCANNING ELECTRON MICROSCOPY; TWO HYBRID SYSTEM;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; DIMERIZATION; FEEDBACK; HOMEODOMAIN PROTEINS; IN SITU HYBRIDIZATION; MERISTEM; MICROSCOPY, ELECTRON, SCANNING; RNA, MESSENGER; TWO-HYBRID SYSTEM TECHNIQUES;

EID: 48549097247     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.107.057448     Document Type: Article

References (51)

1. Baima, S., Nobili, F., Sessa, G., Lucchetti, S., Ruberti, I., and Morelli, G. (1995). The expression of the ATHB-8 homeobox gene is restricted to provascular cells in Arabidopsis thaliana. Development 121: 4171-4182.
2. Benezra, R., Davis, R.L., Lockshon, D., Turner, D.L., and Weintraub, H. (1990). The protein ID: A negative regulator of helix-loop-helix DNA binding proteins. Cell 61: 49-59.
3. Bowman, J.L. (2004). Class III HD-ZIP gene regulation, the golden fleece of ARGONAUTE activity? Bioessays 26: 938-942.
4. Brand, U., Fletcher, J.C., Hobe, M., Meyerowitz, E.M., and Simon, R. (2000). Dependence of stem cell fate in Arabidopsis on a feedback loop regulated by CLV3 activity. Science 289: 617-619.
5. Byrne, M.E. (2006). Shoot meristem function and leaf polarity: The role of class III HD-ZIP genes. PLoS Genet. 2: 785-790.
6. Carraro, N., Peaucelle, A., Laufs, P., and Traas, J. (2006). Cell differentiation and organ initiation at the shoot apical meristem. Plant Mol. Biol. 60: 811-826.
7. Crosson, S., and Moffat, K. (2002). Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch. Plant Cell 14: 1067-1075.
8. Emery, J.F., Floyd, S.K., Alvarez, J., Eshed, Y., Hawker, N.P., Izhaki, A., Baum, S.F., and Bowman, J.L. (2003). Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes. Curr. Biol. 13: 1768-1774.
9. Eshed, Y., Baum, S.F., and Bowman, J.L. (1999). Distinct mechanisms promote polarity establishment in carpels of Arabidopsis. Cell 99: 199-209.
10. Eshed, Y., Baum, S.F., Perea, J.V., and Bowman, J.L. (2001). Establishment of polarity in lateral organs of plants. Curr. Biol. 11: 1251-1260.
11. Golz, J.F. (2006). Signalling between the shoot apical meristem and developing lateral organs. Plant Mol. Biol. 60: 889-903.
12. Green, K.A., Prigge, M.J., Katzman, R.B., and Clark, S.E. (2005). CORONA, a member of the class III homeodomain-leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis. Plant Cell 17: 691-704.
13. Hyun, Y., and Lee, I. (2006). KIDARI, encoding a non-DNA binding bHLH protein, represses light signal transduction in Arabidopsis thaliana. Plant Mol. Biol. 61: 283-296.
14. Jackson, D. (1991). In situ hybridization in plants. In Molecular Plant Pathology: A Practical Approach, D.J. Bowles, S.J. Gurr, and M. McPherson, eds (London: Oxford University Press), pp. 157-181.
15. Juarez, M.T., Kui, J.S., Thomas, J., Heller, B.A., and Timmermans, M.C. (2004). MicroRNA-mediated repression of rolled leaf1 specifies maize leaf polarity. Nature 428: 84-88.
16. Jung, J.-H., and Park, C.-M. (2007). MIR165/166 genes exhibit dynamic expression patterns in regulating shoot apical meristem and floral development in Arabidopsis. Planta 225: 1327-1338.
17. Karimi, M., Inze, D., and Depicker, A. (2002). GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 5: 193-195.
18. Kerstetter, R.A., Bollman, K., Tayler, R.A., Bomblies, K., and Poethig, R.S. (2001). KANADI regulates organ polarity in Arabidopsis. Nature 411: 706-709.
19. Kidner, C.A., and Martienssen, R.A. (2004). Spatially restricted micro-RNA directs leaf polarity through ARGONAUTE1. Nature 428: 81-84.
20. Kim, J., Jung, J.H., Reyes, J.L., Kim, Y.S., Kim, S.Y., Chung, K.S., Kim, J.A., Lee, M., Lee, Y., Narry Kim, V., Chua, N.H., Park, C.M. (2005). MicroRNA-directed cleavage of ATHB15 mRNA regulates vascular development in Arabidopsis inflorescence stems. Plant J. 42: 84-94.
21. Kim, Y.S., Kim, S.G., Park, J.E., Park, H.Y., Lim, M.H., Chua, N.-H., and Park, C.-M. (2006). A membrane-bound NAC transcription factor regulates cell division in Arabidopsis. Plant Cell 18: 3132-3144.
22. Klein, T.M., Wolf, E.D., Wu, R., and Sanford, J.C. (1987). High velocity microprojectiles for delivering nucleic acids into living cells. Nature 327: 70-73.
23. Klemm, J.D., Schreiber, S.L., and Crabtree, G.R. (1998). Dimerization as a regulatory mechanism in signal transduction. Annu. Rev. Immunol. 16: 569-592.
24. Kost, B., Spielhofer, P., and Chua, N.-H. (1998). A GFP-mouse talin fusion protein labels plant actin filaments in vivo and visualizes the actin cytoskeleton in growing pollen tubes. Plant J. 16: 393-401.
25. Li, H., Xu, L., Wang, H., Yuan, Z., Cao, X., Yang, Z., Zhang, D., Xu, Y., and Huang, H. (2005). The putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and microRNA165/166 in Arabidopsis leaf development. Plant Cell 17: 2157-2171.
26. Liu, Y.G., Mitsukawa, N., Oosumi, T., and Whittier, R.F. (1995). Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8: 457-463.
27. Llave, C., Xie, Z., Kasschau, K.D., and Carrington, J.C. (2002). Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056.
28. McConnell, J.R., and Barton, M.K. (1998). Leaf polarity and meristem formation in Arabidopsis. Development 125: 2935-2942.
29. McConnell, J.R., Emery, J., Eshed, Y., Bao, N., Bowman, J.L., and Barton, M.K. (2001). Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411: 709-713.
30. Mukherjee, K., and Bürglin, T.R. (2006). MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins. Plant Physiol. 140: 1142-1150.
31. Nogueira, F.T.S., Madi, S., Chitwood, D.H., Juarez, M.T., and Timmermans, M.C.P. (2007). Two small regulatory RNAs establish opposing fates of a developmental axis. Genes Dev. 21: 750-755.
32. Okamuro, J.K., den Boer, B.G., Lotys-Prass, C., Szeto, W., and Jofuku, K.D. (1996). Flowers into shoots: photo and hormonal control of a meristem identity switch in Arabidopsis. Proc. Natl. Acad. Sci. USA 93: 13831-13836.
33. Olesen, K., Johannesen, P.K., Hoffmann, L., Sorensen, S.B., Gjermansen, C., and Hansen, J. (2000). The pYC plasmids, a series of cassette-based yeast plasmid vectors providing means of counter-selection. Yeast 16: 1035-1043.
34. Otsuga, D., DeGuzman, B., Prigge, M.J., Drews, G.N., and Clark, S.E. (2001). REVOLUTA regulates meristem initiation at lateral positions. Plant J. 25: 223-236.
35. Perk, J., Iavarone, A., and Benezra, R. (2005). ID family of helix-loop-helix proteins in cancer. Nat. Rev. Cancer 5: 603-614.
36. Ponting, C.P., and Aravind, L. (1999). START: A lipid-binding domain in StAR, HD-ZIP and signaling proteins. Trends Biochem. Sci. 24: 130-132.
37. Prigge, M.J., Otsuga, D., Alonso, J.M., Ecker, J.R., Drews, G.N., and Clark, S.E. (2005). Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell 17: 61-76.
38. Reinhardt, D., Frenz, M., Mandel, T., and Kuhlemeier, C. (2005). Microsurgical and laser ablation analysis of leaf positioning and dorsoventral patterning in tomato. Development 132: 15-26.
39. Ruberti, I., Sessa, G., Lucchetti, S., and Morelli, G. (1991). A novel class of plant proteins containing a homeodomain with a closely linked leucine zipper motif. EMBO J. 10: 1787-1791.
40. Ruzionova, M.B., and Benezra, R. (2003). ID proteins in development, cell cycle and cancer. Trends Cell Biol. 13: 410-418.
41. Sessa, G., Steindler, C., Morelli, G., and Ruberti, I. (1998). The Arabidopsis Athb-8, -9, and -14 are members of a small gene family coding for highly related HD-ZIP proteins. Plant Mol. Biol. 38: 609-622.
42. Siegfried, K.R., Eshed, Y., Baum, S.F., Ostuga, D., Drews, G.N., and Bowman, J.L. (1999). Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Development 126: 4117-4128.
43. Talbert, P.B., Adler, H.T., Parks, D.W., and Comai, L. (1995). The REVOLUTA gene is necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana. Development 121: 2723-2735.
44. Vaucheret, H., Vazquez, F., Crété, P., and Bartel, D.P. (2004). The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev. 18: 1187-1197.
45. Villanueva, J.M., Broadhvest, J., Hauser, B.A., Meister, R.J., Schneitz, K., and Gasser, C.S. (1999). INNER NO OUTER regulates abaxial-adaxial patterning in Arabidopsis ovules. Genes Dev. 13: 3160-3169.
46. Weigel, D., et al. (2000). Activation tagging in Arabidopsis. Plant Physiol. 122: 1003-1013.
47. Wenkel, S., Emercy, J., Hou, B., Evans, M.M.S., and Barton, M.K. (2007). A feedback regulatory module formed by LITTLE ZIPPER and HD-ZIPIII genes. Plant Cell 19: 3379-3390.
48. Williams, L., and Fletcher, J.C. (2005). Stem cell regulation in the Arabidopsis shoot apical meristem. Curr. Opin. Plant Biol. 8: 582-586.
49. Williams, L., Grigg, S.P., Xie, M., Christensen, S., and Fletcher, J.C. (2005). Regulation of Arabidopsis shoot apical meristem and lateral organ formation by microRNA miR166g and its AtHD-ZIP target genes. Development 132: 3657-3668.
50. Zhong, R., and Ye, Z.H. (2004). amphivasal vascular bundle 1, a gain-of-function mutation of the IFL1/REV gene, is associated with alterations in the polarity of leaves, stems and carpels. Plant Cell Physiol. 45: 369-385.
51. Zuo, J., Niu, Q.-W., and Chua, N.-H. (2000). An estrogen receptor-based transactivator XVE mediates highly inducible gene expression in transgenic plants. Plant J. 24: 265-273.