Distance dependency and minimum amino acid alphabets for decoy scoring potentials

Journal of Computational Chemistry

Volumn 34, Issue 1, 2013, Pages 10-20

  Pape, Susanne ^a   Hoffgaard, Franziska ^b   Dür, Mirjam ^c   Hamacher, Kay ^d  

^a UNIVERSITY OF ERLANGEN NUREMBERG   (Germany)

^b TU DORTMUND UNIVERSITY   (Germany)

^c UNIVERSITY OF TRIER   (Germany)

^d DARMSTADT UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

amino acid interactions; linear programming; optimization; protein structure; structure threading

Indexed keywords

ALPHABET SIZE; AMINO ACID INTERACTIONS; DISTANCE INFORMATION; FOLD RECOGNITION; LINEAR PROGRAMS; MOLECULAR BIOPHYSICS; NATIVE STRUCTURES; PROTEIN STRUCTURES; STRUCTURE PREDICTION; TERTIARY STRUCTURES;

AMINO ACIDS; KNOWLEDGE BASED SYSTEMS; LINEAR PROGRAMMING; MOLECULAR BIOLOGY; OPTIMIZATION; PARAMETERIZATION; PROTEINS;

STRUCTURAL OPTIMIZATION;

AMINO ACID; PROTEIN;

ARTICLE; CHEMISTRY; MOLECULAR DYNAMICS; PROTEIN CONFORMATION;

AMINO ACIDS; MOLECULAR DYNAMICS SIMULATION; PROTEIN CONFORMATION; PROTEINS;

EID: 84870053874     PISSN: 01928651     EISSN: 1096987X     Source Type: Journal    
DOI: 10.1002/jcc.23099     Document Type: Article

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