Differentiation of Sparidae species by DNA sequence analysis, PCR-SSCP and IEF of sarcoplasmic proteins

Food Chemistry

Volumn 138, Issue 1, 2013, Pages 154-160

  Schiefenhövel, Karin ^a   Rehbein, Hartmut ^a  

^a FEDERAL RESEARCH INSTITUTE OF NUTRITION AND FOOD   (Germany)

Author keywords

DNA sequencing; Fish species identification; IEF; Parvalbumin; Sparidae; SSCP

Indexed keywords

DNA SEQUENCING; FISH SPECIES; IEF; PARVALBUMIN; SPARIDAE; SSCP;

COMMERCE; DNA SEQUENCES; ELECTROPHORESIS; FISH; PROTEINS;

POLYMERASE CHAIN REACTION;

ACANTHOPAGRUS BIFASCIATUS; ANIMAL TISSUE; ARGYROPS SPINIFER; ARTICLE; BOOPS BOOPS; DNA DETERMINATION; DNA SEQUENCE; FISH; ISOELECTRIC FOCUSING; LITHOGNATHUS MORMYRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PAGELLUS BOGARAVEO; PAGRUS CAERULEOSTICTUS; POLYMERASE CHAIN REACTION; SARCOPLASM; SINGLE STRAND CONFORMATION POLYMORPHISM; SPARIDAE; SPARUS AURATA; SPECIES DIFFERENCE; SPECIES IDENTIFICATION; SPONDYLIOSOMA CANTHARUS;

ANIMALS; FISH PROTEINS; FOOD CONTAMINATION; ISOELECTRIC FOCUSING; PERCIFORMES; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL; QUALITY CONTROL; SEAFOOD;

ACANTHOPAGRUS BIFASCIATUS; ARGYROPS SPINIFER; BOOPS BOOPS; LITHOGNATHUS MORMYRUS; PAGELLUS BOGARAVEO; SPARIDAE; SPARUS AURATA; SPONDYLIOSOMA CANTHARUS;

EID: 84869889580     PISSN: 03088146     EISSN: 18737072     Source Type: Journal    
DOI: 10.1016/j.foodchem.2012.10.057     Document Type: Article

References (31)

1. J.A. Alarcón, and M.C. Alvarez Genetic identification of sparid species by isozyme markers: Application to interspecific hybrids Aquaculture 173 1999 95 103
2. S.H. Arif, M. Jabeen, and A.-U. Hasnain Biochemical characterization and thermostable capacity of parvalbumins: The major fish-food allergens Journal of Food Biochemistry 31 2007 121 137
3. B. Basurco, A. Lovatelli, and B. Garcia Current status of Sparidae aquaculture M.A. Pavlidis, C.C. Mylonas, Sparidae biology and aquaculture of gilthead sea bream and other species 2011 Wiley-Blackwel 1 50
4. BLE (Federal Agency for Agriculture and Food) (2011). List of market names of products from fisheries and aquaculture. http://www.ble.de.
5. K.P. Campbell, D.H. MacLennan, and A.O. Jorgensen Staining of the Ca2+-binding proteins, calsequestrin, calmodulin, troponin C, and S-100, with the catonic carbocyanine dye "Stains-all" The Journal of Biological Chemistry 258 25 1983 11267 11273
6. Carpenter, K.E.; Niem, V.H. (2001). FAO Species Identification Guide for Fishery Purpose. The Living Marine Resources of the Western Central Pacific: Bony fishes part 3 (Menidae to Pomacentridae) (Vol. 5). Rome: Food and Agriculture Organization of the United Nations.
7. S.N. Chiba, Y. Iwatsuki, T. Yoshino, and N. Hanzawa Comprehensive phylogeny of the family sparidae (Perciformes: Teleostei) inferred from mitochondrial gene analysis Genes and Genetic Systems 84 2009 153 170
8. L. Cocolin, E. D́Agaro, M. Manzano, D. Lanari, and G. Comi Rapid PCR-RFLP method for the identification of marine fish fillets (Seabass, Seabream, Umbrine, and Dentex) Journal of Food Science 65 2000 1315 1317
9. R. De la Herrán, C. Ruiz Rejón, M. Ruiz Rejón, and M.A. Garrido-Ramos The molecular phylogeny of the Sparidae (Pisces, Perciformes) based on two satellite DNA families Heredity 87 2001 691 697
10. T.R. Downs, and W.W. Wilfinger Fluorimetric quantification of DNA in cells and tissues Analytical Biochemistry 131 1983 538 547
11. FAO statistics (2009). Available from < http://www.fao.org/fishery/ statistics/en > Accessed December 2011.
12. FAO (2010). FACT SHEET: The international fish trade and world fisheries. United Nations Food and Agriculture Organization. Available from < http://www.fao.org > Accessed November 2011.
13. Fischbase (2010). Available from < http://www.fishbase.org > Accessed March 2010.
14. L. Filonzi, S. Chiesa, M. Vaghi, and F. Nonnis Marzano Molecular barcoding reveals mislabelling of commercial fish products in Italy Food Research International 43 2010 1383 1388
15. B. Focant, P. Vandewalle, and F. Huriaux Expression of myofibrillar proteins and parvalbumin isoforms during the development of a flatfish, the common sole Solea solea: comparison with the turbot Scophthalmus maximus Comparative Biochemistry and Physiology 135B 2003 493 502
16. N. Girija, and H. Rehbein Comparison of parvalbumin patterns from different fish species by isoelectric focusing of muscle extracts Comparative Biochemistry and Physiology 91B 1988 723 728
17. R. Hanel, and C. Sturmbauer Multiple recurrent evolution of trophic types in Northeastern Atlantic and Mediterranean seabreams (Sparidae, Percoidei) Journal of Molecular Evolution 50 2000 276 283
18. R. Hanel, and C. Tsigenopoulos Phylogeny, evolution, and taxonomy of sparids with some notes on their ecology and biology M.A. Pavlidis, C.C. Mylonas, Sparidae biology and aquaculture of gilthead sea bream and other species 2011 Wiley-Blackwell 51 73
19. R. Hanner, S. Becker, N.V. Ivanova, and D. Steinke FISH-BOL and seafood identification: geographically dispersed case studies reveal systemic market substitution across Canada Mitochondrial DNA 22 S1 2011 106 122
20. J.L. Jacquet, and D. Pauly Trade secrets: Renaming and mislabelling of seafood Marine Policy 32 2008 309 318
21. C. Kruse Fæste Fish allergen detection B. Popping, C. Diaz-Amigo, K. Hoenicke, John Wiley & Sons Molecular biological and immunological techniques and applications for food chemists 2010 Wiley-VCH Weinheim 407 422
22. T.M. Orrell, K.E. Carpenter, J.A. Musick, and J.E. Graves Phylogenetic and biogeographic analysis of the Sparidae (Perciformes: Percoidei) from cytochrome b sequences Copeia 2002 3 2004 618 631
23. R.S. Rasmussen, and M.T. Morrissey DNA-based methods for the identification of commercial fish and seafood species Comprehensive Reviews Food Science Safety 7 2008 280 295
24. H. Rehbein Identification of the fish species of raw or cold-smoked salmon and salmon caviar by single-strand conformation polymorphism (SSCP) analysis European Food Research and Technology 220 2005 625 632
25. H. Rehbein, R. Kündiger, C. Pineiro, and R.I. Perez-Martin Fish muscle parvalbumins as marker proteins for native and urea isoelectric focusing Electrophoresis 21 2000 1458 1463
26. H. Rehbein, E. Müller-Hohe, and R. Hanel False fish-A report of difficulties to identify a "sole" Informationen aus der Fischereiforschung 56 2009 35 40
27. K. Schiefenhövel, and H. Rehbein Identification of barramundi (Lates calcarifer) and tilapia (Oreochromis spp.) fillets by DNA-and protein-analytical methods Journal of Consumer Protection and Food Safety 6 2010 203 214
28. E.R. Schoenman, J.A. Chiaro, A. Jones, L.D. Bastin, and D.J. Coughlin A comparative analysis of parvalbumin expression in pinfish (Lagodon rhomboids) and toadfish (Opsanus sp.) Comparative Biochemistry and Physiology 155A 2010 91 99
29. M.M. Smith, and P.C. Heemstra Smithś sea fishes 2003 Struik Publishers, Springer-Verlag
30. P.J.P. Whitehead, M.-L. Bauchot, J.-C. Hureau, J. Nielsen, and E. Tortonese Fishes of the North-eastern Atlantic and the Mediterranean Vol. II 1986 United Nations Educational, Scientific and Cultural Organization (Unesco)
31. C. Wolf, M. Burgener, P. Hübner, and J. Lüthy PCR-RFLP analysis of mitochondrial DANN: differentiation of fish species Lebensmittel- Wissenschaft & Technologie 33 2000 144 150