Methodological framework for projecting the potential loss of intraspecific genetic diversity due to global climate change

BMC Evolutionary Biology

Volumn 12, Issue 1, 2012, Pages

  Pfenninger, Markus ^a   Bálint, Miklós ^a,b   Pauls, Steffen U ^a  

^a GOETHE UNIVERSITY   (Germany)

^b BABE BOLYAI UNIVERSITY   (Romania)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; CADDISFLY; CLIMATE CHANGE; DATA SET; ECOLOGICAL MODELING; GENETIC DIFFERENTIATION; HABITAT LOSS; INTRASPECIFIC VARIATION; MOLECULAR ANALYSIS; PHYLOGEOGRAPHY; SNAIL; TERRESTRIAL ENVIRONMENT;

GASTROPODA; SMICRIDEA; SMICRIDEA MUCRONATA; STYLOMMATOPHORA; TRICHOPTERA; TROCHULUS VILLOSUS;

ANIMAL; ARGENTINA; ARTICLE; BIODIVERSITY; CHILE; CLASSIFICATION; CLIMATE CHANGE; CLUSTER ANALYSIS; ECOSYSTEM; FEASIBILITY STUDY; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; GROWTH, DEVELOPMENT AND AGING; HAPLOTYPE; INSECT; METHODOLOGY; PHYLOGENY; PHYLOGEOGRAPHY; REPRODUCIBILITY; SNAIL; SWITZERLAND;

ANIMALS; ARGENTINA; BIODIVERSITY; CHILE; CLIMATE CHANGE; CLUSTER ANALYSIS; ECOSYSTEM; FEASIBILITY STUDIES; GENETIC VARIATION; GEOGRAPHY; HAPLOTYPES; INSECTS; PHYLOGENY; PHYLOGEOGRAPHY; REPRODUCIBILITY OF RESULTS; SNAILS; SWITZERLAND;

MLCS; MLOWN;

EID: 84869885216     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-12-224     Document Type: Article

References (73)

1. Intergovernmental Panel on Climate Change, IPCC Fourth Assessment Report: Climate Change 2007 2007 http://www.ipcc.ch/publications-and-data/publications- ipcc-fourth-assessment-report-synthesis-report.htm
2. United Nations, Convention on Biological Diversity 1992 http://www.cbd.int/convention/text/
3. The role of molecular genetics in sculpting the future of integrative biogeography. Riddle BR, Dawson MN, Hadly EA, Hafner DJ, Hickerson MJ, Mantooth SJ, Yoder AD, Prog Phys Geogr 2008 32 173 202 10.1177/0309133308093822
4. Environmental change and the option value of genetic diversity. Jump AS, Marchant R, Penuelas J, Trends Plant Sci 2009 14 1 51 58 10.1016/j.tplants.2008. 10.002 19042147
5. The impact of global climate change on genetic diverstiy within populations and species. Pauls SU, Nowak C, Bálint M, Pfenninger M, Mol Ecol 2012 http://dx.doi.org/10.1111/mec.12152
6. Geographic patterns and environmental gradients-the central-marginal model in Drosophila revisited. Brussard PF, Annu Rev Ecol Syst 1984 15 25 64 10.1146/annurev.es.15.110184.000325
7. Range, population abundance and conservation. Lawton JH, Trends Ecol Evol 1993 8 11 409 413 10.1016/0169-5347(93)90043-O 21236213 (Pubitemid 2001538)
8. Spatial patterns of demography and genetic processes across the species' range: null hypotheses for landscape conservation genetics. Vucetich JA, Waite TA, Cons Genet 2003 4 5 639 645 10.1023/A:1025671831349 (Pubitemid 37216060)
9. Gaston KJ, The structure and dynamics of geographic ranges Oxford, UK: Oxford University Press 2003
10. Evolution and ecology of species range limits. Sexton JP, McIntyre PJ, Angert AL, Rice KJ, Ann Rev Ecol Evol Syst 2009 40 415 436 10.1146/annurev. ecolsys.110308.120317
11. Pielou EC, After the Ice Age: The Return of Life to the Glaciated North America Chicago, IL: University of Chicago Press 1991
12. Post-glacial colonization, drift, local selection and conservation value of populations: a northern perspective. Pamilo P, Savolainen O, Hereditas 1999 130 3 229 238 (Pubitemid 29423804)
13. The genetic legacy of the Quaternary ice ages. Hewitt G, Nature 2000 405 6789 907 913 10.1038/35016000 10879524 (Pubitemid 30435039)
14. Evolution of a species' range. Kirkpatrick M, Barton NH, Am Nat 1997 150 1 1 23 10.1086/286054 18811273 (Pubitemid 27413925)
15. Genetic models of adaptation and gene flow in peripheral populations. Garcia-Ramos G, Kirkpatrick M, Evolution 1997 51 1 21 28 10.2307/2410956
16. Consequences of range contractions and range shifts on molecular diversity. Arenas M, Ray N, Currat M, Excoffier L, Mol Biol Evol 29 1 207 218
17. Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Nee) in the face of climate change. Sork VL, Davis FW, Westfall R, Flint A, Ikegami M, Wang HF, Grivet D, Mol Ecol 2010 19 17 3806 3823 10.1111/j.1365-294X.2010.04726.x 20723054
18. Genetic consequences of climate change for northern plants. Alsos IG, Ehrich D, Thuiller W, Eidesen PB, Tribsch A, Schönswetter P, Lagaye C, Taberlet P, Brochmann C, Proc Roy Soc B: Biol Sci 2012 279 1735 2042 2051 10.1098/rspb.2011.2363
19. Cryptic biodiversity loss linked to global climate change. Balint M, Domisch S, Engelhardt CHM, Haase P, Lehrian S, Sauer J, Theissinger K, Pauls SU, Nowak C, Nature Climate Change 2011 1 6 313 318 10.1038/nclimate1191
20. Global warming will affect the genetic diversity and uniqueness of Lycaena helle populations. Habel JC, Rodder D, Schmitt T, Neve G, Glob Chang Biol 2011 17 1 194 205 10.1111/j.1365-2486.2010.02233.x
21. Modelling range shifts and assessing genetic diversity distribution of the montane aquatic mayfly Ameletus inopinatus in Europe under climate change scenarios. Taubmann J, Theissinger K, Feldheim KA, Laube I, Graf W, Haase P, Johannesen J, Pauls SU, Conserv Genet 2011 12 503 515 10.1007/s10592-010-0157-x
22. Forecasting changes in population genetic structure of alpine plants in response to global warming. Jay F, Manel S, Alvarez N, Durand EY, Thuiller W, Holderegger R, Taberlet P, Francois O, Mol Ecol 2012 21 10 2354 2368 10.1111/j.1365-294X.2012.05541.x 22512785
23. Second generation human haplotype map of over 3.1 million SNPs. Consortium IH, Nature 2007 449 851 861 10.1038/nature06258 17943122 (Pubitemid 47598626)
24. Adaptive evolutionary conservation: towards a unified concept for defining conservation units. Fraser DJ, Bernatchez L, Mol Ecol 2001 10 12 2741 2752 11903888 (Pubitemid 34115513)
25. Species and the diversity of natural groups. Shaw KL, Endless Forms: Species and Speciation Oxford: Oxford University Press, Howard DJ, Berlocher SH, 1998
26. Source or reservoir-the role of the Aegean for the diversity of potamid freshwater crabs (Crustacea: Brachyura). Jesse R, Klaus S, Grudinski M, Streit B, Pfenninger M, Mol Phylogenet Evol 2011 59 1 23 33 10.1016/j.ympev.2010.12.011 21216297
27. Taxonomic revision of Rhyacophila aquitanica (Trichoptera: Rhyacophilidae), based on molecular and morphological evidence and change of taxon status of Rhyacophila aquitanica ssp. carpathica to Rhyacophila carpathica stat. n. Bálint M, Botosaneau L, Ujivárosi L, Popescu O, Zootaxa 2009 2148 39 48
28. Population structure in two closely related, partially sympatric caddisflies in Eastern Europe: historic introgression, limited dispersal and cryptic diversity. Pauls SU, Theissinger K, Ujvárosi L, Bálint M, Haase P, J N Am Benthol Soc 2010 28 517 536
29. A cladistic-analysis of phenotypic associations with haplotypes inferred from restriction-endonuclease mapping or dna- sequencing.5. analysis of case-control sampling designs-alzheimers-disease and the apoprotein-e locus. Templeton AR, Genetics 1995 140 1 403 409 7635303
30. Accelerated species inventory on madagascar using coalescent-based models of species delineation. Monaghan MT, Wild R, Elliot M, Fujisawa T, Balke M, Inward DJ, Lees DC, Ranaivosolo R, Eggleton P, Barraclough TG, et al. Syst Biol 2009 58 3 298 311 10.1093/sysbio/syp027 20525585
31. Why sampling scheme matters: the effect of sampling scheme on landscape genetic results. Schwartz MK, McKelvey KS, Conserv Genet 2009 10 2 441 452 10.1007/s10592-008-9622-1
32. Sampling in ecology and evolution-bridging the gap between theory and practice. Albert CH, Yoccoz NG, Edwards TC, Graham CH, Zimmermann NE, Thuiller W, Ecography 33 6 1028 1037
33. Nei M, Molecular Evolutionary Genetics New York: Columbia University Press 1987
34. Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Gotelli NJ, Colwell RK, Ecol Lett 2001 4 4 379 391 10.1046/j.1461-0248.2001.00230.x (Pubitemid 32752218)
35. Magurran AE, Measuring biological diversity Oxford: Blackwell Publishing 2004
36. Why do snails have hairs? A Bayesian inference of character evolution. Pfenninger M, Hrabáková M, Steinke D, Dépraz A, BMC Evol Biol 2005 5 59 10.1186/1471-2148-5-59 16271138 (Pubitemid 41781683)
37. Uses and misuses of biocllimatic envelope modelling. Araújo MB, Peterson AT, Ecology 2012 93 1527 1539 10.1890/11-1930.1 22919900
38. Effects of sample size on the performance of species distribution models. Wisz MS, Hijmans RJ, Li J, Peterson AT, Graham CH, Guisan A, Div Dist 2008 14 763 773 10.1111/j.1472-4642.2008.00482.x
39. A case for incorporating phylogeography and landscape genetics into species distribution modelling approaches to improve climate adaptation and conservation planning. Scoble J, Lowe AJ, Div Dist 2010 16 3 343 353 10.1111/j.1472-4642.2010.00658.x
40. Sensitivity of predictive species distribution models to change in grain size. Guisan A, Graham CH, Elith J, Huettmann F, Group NSDM, Div Dist 2007 13 332 340 10.1111/j.1472-4642.2007.00342.x (Pubitemid 46633446)
41. Postglacial recolonization at a snail's pace (Trochulus villosus): confronting competing refugia hypotheses using model selection. Depraz A, Cordellier M, Hausser J, Pfenninger M, Mol Ecol 2008 17 10 2449 2462 10.1111/j.1365-294X.2008.03760.x 18422928 (Pubitemid 351623780)
42. DNA barcode data confirm new species and reveal cryptic diversity in Chilean Smicridea (Smicridea) (Trichoptera: Hydropsychidae). Pauls SU, Blahnik RJ, Zhou X, Wardwell TC, Holzenthal RW, J N Am Benthol Soc 2010 29 1058 1074 10.1899/09-108.1
43. Turner H, Kuiper J, Thew N, Bernasconi R, Rüetschi J, Wüthrich M, Gosterli M, Fauna Helvetica 2: Mollusca Neuchâtel: Centre Suisse de carthographie de la faune 1998
44. Studies of Neotropical Caddisflies, XXXIX: the Genus Smicridea in the Chilean Subregion (Trichoptera: Hydropsychidae). Flint OS Jr, Smithsonian Contributions to Zoology 1989 472 1 45
45. TCS: a computer program to estimate gene genealogies. Clement M, Posada D, Crandall KA, Mol Ecol 2000 9 10 1657 1659 10.1046/j.1365-294x.2000.01020.x 11050560
46. Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact. Pfenninger M, Posada D, Evolution 2002 56 9 1776 1788 12389722 (Pubitemid 35211729)
47. Colwell RK, EstimateS: Statistical estimation of species richness and shared species from samples. Version 8 2006 http://viceroy.eeb.uconn.edu/ estimates/
48. Very high resolution interpolated climate surfaces for global land areas. Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A, Int J Clim 2005 25 1956 1978
49. High resolution statistically downscaled future climate surfaces. Research Program on Climate Change, Agriculture and Food Security, http://ccafs-climate.org/
50. A Maximum Entropy Approach to Species Distribution Modeling. Phillips SJ, Dudk M, Schapire RE, Proceedings of the Twenty-First International Conference on Machine Learning 2004 655 662 (Pubitemid 40290865)
51. Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation. Phillips SJ, Dudk M, Ecography 2008 31 2 161 175 10.1111/j.0906-7590.2008.5203.x (Pubitemid 351457533)
52. A statistical explanation of MaxEnt for ecologists. Elith J, Phillips SJ, Hastie T, Dudk M, Chee YE, Yates CJ, Div Dist 2011 17 1 43 57 10.1111/j.1472-4642.2010.00725.x
53. A review of methods for the assessment of prediction errors in conservation presence/absence models. Fielding AH, Bell JF, Env Cons 1997 24 01 38 49 10.1017/S0376892997000088 (Pubitemid 27376840)
54. Centre Suisse de Cartographie de la Faune (CSCF), 2011 http://www.cscf.ch/
55. Kerney MP, Cameron RAD, Jungbluth JH, Die Landschnecken Nord- und Mitteleuropas Hamburg; Berlin: Paul Parey 1983
56. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Templeton AR, Mol Ecol 1998 7 4 381 397 10.1046/j.1365-294x.1998.00308.x 9627999 (Pubitemid 28226687)
57. Bayesian species delimitation using multilocus sequence data. Yang ZH, Rannala B, Proc Natl Acad Sci U S A 2010 107 20 9264 9269 10.1073/pnas. 0913022107 20439743
58. Inference of population structure from multilocus genotype data. Pritchard JK, Stephens M, Donnelly P, Genetics 2000 155 945 959 10835412 (Pubitemid 30397141)
59. AWclust: point-and-click software for non-parametric population structure analysis. Gao X, Starmer JD, BMC Bioinf 2008 9 77 10.1186/1471-2105-9-77 (Pubitemid 351298547)
60. PCA-based population structure inference with generic clustering algorithms. Lee C, Abdool A, Huang CH, BMC Bioinforma 2009 10 13 10.1186/1471-2105-10-13
61. Within-taxon niche structure: niche conservatism, divergence and predicted effects of climate change. Pearman PB, D'Amen M, Graham CH, Thuiller W, Zimmermann NE, Ecography 2010 33 6 990 1003 10.1111/j.1600-0587.2010.06443.x
62. Conservation of phylogeographic lineages under climate change. D'Amen M, Zimmermann NE, Pearman PB, Glob Ecol Biogeogr 2012 10.1111/j.1466-8238.2012. 00774.x
63. Assessing the effects of climate change on the distribution of pulmonate freshwater snail biodiversity. Cordellier M, Pfenninger A, Streit B, Pfenninger M, Mar Biol 2012 159 11 2519 2531 10.1007/s00227-012-1894-9
64. Species distribution models: ecological explanation and prediction across space and time. Elith J, Leathwick JR, Ann Rev Ecol Evol Syst 2009 40 677 697 10.1146/annurev.ecolsys.110308.120159
65. Changes in species interactions across a 2.5 km elevation gradient: effects on plant migration in response to climate change. Hillyer R, Silman MR, Global Change Biol 2010 16 12 3205 3214 10.1111/j.1365-2486.2010.02268.x
66. Contrasting responses of Peromyscus mice of Yosemite National Park to recent climate change. Yang DS, Conroy CJ, Moritz C, Global Change Biol 2011 17 8 2559 2566 10.1111/j.1365-2486.2011.02394.x
67. Adaptation to marginal habitats. Kawecki TJ, Ann Rev Ecol Evol Syst 2008 39 321 342 10.1146/annurev.ecolsys.38.091206.095622
68. Accounting for uncertainty in making species protection decisions. Prato T, Conserv Biol 2005 19 3 806 814 (Pubitemid 40764547)
69. Genetic population structure of an autumn emerging caddisfly with inherently low dispersal capacity and insights into its phylogeography. Lehrian S, Balint M, Haase P, Pauls SU, J N Am Benthol Soc 2009 29 1100 1118
70. Contrasting population genetic structure of two widespread aquatic insects in the Chilean high-slope rivers. Sabando MC, Vila I, Penaloza R, Veliz D, Marine and Freshwater Res 2011 62 1 10 10.1071/MF10105
71. Intraspecific range dynamics and niche evolution in Candidula land snail species. Pfenninger M, Nowak C, Magnin F, Biol J Linnean Soc 2007 90 303 317 10.1111/j.1095-8312.2007.00724.x (Pubitemid 46195142)
72. A species delimitation approach in the Trochulus sericeus/hispidus complex reveals two cryptic species within a sharp contact zone. Depraz A, Hausser J, Pfenninger M, BMC Evol Biol 2009 9 171 10.1186/1471-2148-9-171 19622149
73. A new Trichia species from Switzerland. Pfenninger M, Pfenninger A, Archiv für Molluskenkunde 2005 134 1 9 22173968