Conservation of phylogeographic lineages under climate change

Global Ecology and Biogeography

Volumn 22, Issue 1, 2013, Pages 93-104

  D'Amen, Manuela ^a   Zimmermann, Niklaus E ^a   Pearman, Peter B ^a  

^a SWISS FEDERAL RESEARCH INSTITUTE WSL   (Switzerland)

Author keywords

Africa; Biodiversity; Gap analysis; Genetic diversity; Global warming; Mammals; Phylogeography; Protected areas; Species distribution models

Indexed keywords

BIODIVERSITY; CLIMATE CHANGE; ENVIRONMENTAL CHANGE; GLOBAL WARMING; MAMMAL; NATURE CONSERVATION; NICHE; PHYLOGEOGRAPHY; PROTECTED AREA;

AFRICA;

MAMMALIA;

EID: 84870908854     PISSN: 1466822X     EISSN: 14668238     Source Type: Journal    
DOI: 10.1111/j.1466-8238.2012.00774.x     Document Type: Article

References (57)

1. Allouche, O., Tsoar, A. & Kadmon, R. (2006) Assessing the accuracy of species distribution models: prevalence, kappa and the true skill statistic (TSS). Journal of Applied Ecology, 43, 1223-1232.
2. Alpers, D.L., Van Vuuren, B.J., Arctander, P. & Robinson, T.J. (2004) Population genetics of the roan antelope (Hippotragus equinus) with suggestions for conservation. Molecular Ecology, 13, 1771-1784.
3. Araújo, M.B. & Guisan, A. (2006) Five (or so) challenges for species distribution modelling. Journal of Biogeography, 33, 1677-1688.
4. Araújo, M.B. & New, M. (2006) Ensemble forecasting of species distributions. Trends in Ecology and Evolution, 22, 42-47.
5. Araújo, M.B., Cabeza, M., Thuiller, W., Hannah, L. & Williams, P.H. (2004) Would climate change drive species out of reserves? An assessment of existing reserve-selection methods. Global Change Biology, 10, 1618-1626.
6. Araújo, M.B., Pearson, R.G. & Thuiller, W. (2005) Validation of species-climate impact models under climate change. Global Change Biology, 11, 1504-1513.
7. Ballard, J.W.O. & Whitlock, M.C. (2004) The incomplete natural history of mitochondria. Molecular Ecology, 13, 729-744.
8. Beaumont, L.J., Pitman, A., Perkins, S., Zimmermann, N.E., Yoccoz, N.G. & Thuiller, W. (2011) Impacts of climate change on the world's most exceptional ecoregions. Proceedings of the National Academy of Sciences USA, 108, 2306-2311.
9. Belsley, D.A., Kuh, E. & Welsch, R.E. (1980) Regression diagnostics: identifying influential data and sources of collinearity. John Wiley and Sons, New York.
10. Bonin, A., Nicole, F., Pompanon, F., Miaud, C. & Taberlet, P. (2007) Population adaptive index: a new method to help measure intraspecific genetic diversity and prioritize populations for conservation. Conservation Biology, 21, 697-708.
11. Brown, D.M., Brenneman, R.A., Koepfli, K.-P., Pollinger, J.P., Milá, B., Georgiadis, N.J., Louis, E.E., Grether, G.F., Jacobs, D.K. & Wayne, R.K. (2007) Extensive population genetic structure in the giraffe. BMC Biology, 5, 57. doi:10.1186/1741-7007-5-57.
12. Charruau, P., Fernandes, C., Orozco-Terwengel, P., Peters, J., Hunter, L., Ziaie, H., Jourabchian, A., Jowkar, H., Schaller, G., Ostrowski, S., Vercammen, P., Grange, T., Schlötterer, C., Kotze, A., Geigl, E.-M., Walzer, C. & Burger, P.A. (2011) Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolates. Molecular Ecology, 20, 706-724.
13. Crandall, K.A., Bininda-Emonds, O.R.P., Mace, G.M. & Wayne, R.K. (2000) Considering evolutionary processes in conservation biology. Trends in Ecology and Evolution, 15, 290-295.
14. D'Amen, M., Bombi, P., Pearman, P.B., Schmatz, D.R., Zimmermann, N.E. & Bologna, M.A. (2011) Will climate change reduce the efficacy of protected areas for amphibian conservation in Italy? Biological Conservation, 144, 989-997.
15. East, R. (1998) Antelope specialist group report. IUCN, Gland, Switzerland.
16. Elith, J., Graham, C.H., Anderson, R.P. etal. (2006) Novel methods improve prediction of species' distributions from occurrence data. Ecography, 29, 129-151.
17. Elith, J., Leathwick, J.R. & Hastie, T. (2008) A working guide to boosted regression trees. Journal of Animal Ecology, 77, 802-813.
18. Ennos, R.A., French, G.C. & Hollingsworth, P.M. (2005) Conserving taxonomic complexity. Trends in Ecology Evolution, 20, 164-168.
19. Fennessy, J. & Brown, D. (2010) Giraffa camelopardalis. IUCN 2010. IUCN Red List of threatened species. Version 2010.4. Available at: http://www.iucnredlist.org (accessed May 2011).
20. Fielding, A.H. & Bell, J.F. (1997) A review of methods for the assessment of prediction errors in conservation presence/absence models. Environmental Conservation, 24, 38-49.
21. Friedman, J., Hastie, T. & Tibshirani, R. (2000) Additive logistic regression: a statistical view of boosting. Annals of Statistics, 28, 337-374.
22. Groves, C.P. & Bell, C.H. (2004) New investigations on the taxonomy of the zebras genus Equus, subgenus Hippotigris. Mammalian Biology, 69, 182-196.
23. Groves, C.P. & Grubb, P. (2000) Do Loxodonta cyclotis and L. africana interbreed? Elephant, 2, 4-7.
24. Grubb, P., Groves, C.P., Dudley, J.P. & Shoshani, J. (2000) Living African elephants belong to two species: Loxodonta africana (Blumenbach, 1797) and Loxodonta cyclotis (Matschie, 1900). Elephant, 2, 1-4.
25. Guisan, A. & Zimmermann, N.E. (2000) Predictive habitat distribution models in ecology. Ecological Modelling, 135, 147-186.
26. Hannah, L., Midgley, G.F., Lovejoy, T.E., Bond, W.J., Bush, M., Lovett, J.C., Scott, D. & Woodward, F. (2002) Conservation of biodiversity in a changing climate. Conservation Biology, 16, 264-268.
27. Harley, E.H., Baumgarten, I., Cunningham, J. & O'Ryan, C. (2005) Genetic variation and population structure in remnant populations of black rhinoceros, Diceros bicornis, in Africa. Molecular Ecology, 14, 2981-2990.
28. Hijmans, R.J., Cameron, S.E., Parra, J.L., Jones, P.G. & Jarvis, A. (2005) Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology, 25, 1965-1978.
29. Hoffmann, A.A. & Sgrò, C.M. (2011) Climate change and evolutionary adaptation. Nature, 470, 479-485.
30. IUCN (2010) IUCN Red List of threatened species. Version 2010.4. Available at: http://www.iucnredlist.org (accessed March 2011).
31. IUCN and UNEP-WCMC (2010) The world database on protected areas (WDPA): annual release. UNEP-WCMC, Cambridge, UK. Available at: http://www.wdpa.org (accessed July 2010).
32. Jennings, M.D. (2000) Gap analysis: concepts, methods, and recent results. Landscape Ecology, 15, 5-20.
33. Kearney, M., Porter, W.P., Williams, C., Ritchie, S. & Hoffmann, A.A. (2009) Integrating biophysical models and evolutionary theory to predict climatic impacts on species' ranges: the dengue mosquito Aedes aegipti in Australia. Functional Ecology, 23, 528-538.
34. Lorenzen, E.D., Simonsen, B.T., Kat, P.W., Arctander, P. & Siegismund, H.R. (2006) Hybridization between subspecies of waterbuck (Kobus ellipsiprymnus) in zones of overlap with limited introgression. Molecular Ecology, 15, 3787-3799.
35. Lorenzen, E.D., De Neergaard, R., Arctander, P. & Siegismund, H.R. (2007) Phylogeography, hybridization and Pleistocene refugia of the kob antelope (Kobus kob). Molecular Ecology, 16, 3241-3252.
36. Lynch, M. & Lande, R. (1993) Evolution and extinction in response to environmental change. Biotic interactions and global change (ed. by P.M. Kareiva, J.G. Kingsolver and R.B. Huey), pp. 234-250. Sinauer, Sunderland, MA.
37. Mace, G.M. (2004) The role of taxonomy in species conservation. Philosophical Transactions of the Royal Society B: Biological Sciences, 359, 711-719.
38. McMahon, S.M., Harrison, S.P., Armbruster, W.S., Bartlein, P.J., Beale, C.M., Edwards, M.E., Kattge, J., Midgley, G., Morin, X. & Prentice, I.C. (2011) Improving assessment and modelling of climate change impacts on global terrestrial biodiversity. Trends in Ecology and Evolution, 26, 249-259.
39. Meier, E.S., Lischke, H., Schmatz, D.R. & Zimmermann, N.E. (2011) Climate, competition and connectivity affect future migration and ranges of European trees. Global Ecology and Biogeography, 21, 164-178.
40. Moodley, Y. & Harley, E.H. (2005) Population structuring in mountain zebras (Equus zebra): the molecular consequences of divergent demographic histories. Conservation Genetics, 6, 953-968.
41. Murphy, H.T. & Lovett-Doust, J. (2007) Accounting for regional niche variation in habitat suitability models. Oikos, 116, 99-110.
42. Muwanika, V.B., Nyakaana, S., Siegismund, H.R. & Arctander, P. (2003) Phylogeography and population structure of the common warthog (Phacochoerus africanus) inferred from variation in mitochondrial DNA sequences and microsatellite loci. Heredity, 91, 361-372.
43. Novellie, P., Lloyd, P.H. & Joubert, E. (1992) Mountain zebras. Zebras, asses and horses: an action plan for the conservation of wild equids (ed. by P. Duncan), pp. 6-9. IUCN, Gland, Switzerland.
44. Nowak, R. (1999) Perissodactyla; Equidae. Walker's mammals of the world, Vol. 2, 6th edn (ed. by R. Nowak), pp. 1020-1021. The Johns Hopkins University Press, Baltimore, MD.
45. O'Brien, S.J., Wildt, D., Goldman, D., Merril, C.R. & Bush, M. (1983) The cheetah is depauperate in genetic variation. Science, 221, 459-462.
46. Parmesan, C. & Yohe, G. (2003) A globally coherent fingerprint of climate change impacts across natural systems. Nature, 421, 37-42.
47. Pearman, P.B., D'Amen, M., Graham, C.H., Thuiller, W. & Zimmermann, N.E. (2010) Within-taxon niche structure: niche conservatism, divergence and predicted effects of climate change. Ecography, 33, 990-1003.
48. Peterson, A.T. (2011) Ecological niche conservatism: a time-structured review of evidence. Journal of Biogeography, 38, 817-827.
49. Pfenninger, M., Nowak, C. & Magnin, F. (2007) Intraspecific range dynamics and niche evolution in Candidula land snail species. Biological Journal of the Linnean Society, 90, 303-317.
50. R Development Core Team (2010) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
51. Ramirez, J. & Jarvis, A. (2008) High resolution statistically downscaled future climate surfaces. International Centre for Tropical Agriculture, CIAT, Cali, Colombia. Available at: http://www.ccafs-climate.org/ (accessed March 2011).
52. Ridgeway, G. (2006) Generalized boosted models: a guide to the gbm package. R vignette.[unpublished PDF document]. Available at: http://cran.r-project.org/web/packages/gbm/vignettes/gbm.pdf (accessed March 2011).
53. Rohland, N., Reich, D., Mallick, S., Meyer, M., Green, R.E., Georgiadis, N.J., Roca, A.L. & Hofreiter, M. (2010) Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants. PLoS Biology, 8, 12, e1000564.
54. Stevens, G.C. (1989) The latitudinal gradient in geographical range: how so many species coexist in the tropics. The American Naturalist, 133, 240-256.
55. Stockwell, D.R.B. & Peterson, A.T. (2002) Controlling bias in biodiversity data. Predicting species occurrences: issues of scale and accuracy (ed. by J.M. Scott, P.J. Heglund and M.L. Morrison), pp. 537-546. Island Press, Washington, DC.
56. Thuiller, W., Lavergne, S., Roquet, C., Boulangeat, I., Lafourcade, B. & Araujo, M.B. (2011) Consequences of climate change on the tree of life in Europe. Nature, 470, 531-534.
57. Whitehouse, A.M. & Harley, E.H. (2001) Post-bottleneck genetic diversity of elephant populations in South Africa, revealed using microsatellite analysis. Molecular Ecology, 10, 2139-2149.