메뉴 건너뛰기




Volumn 3, Issue 4, 2012, Pages 262-275

Next generation sequencing of CLU, PICALM and CR1: Pitfalls and potential solutions

Author keywords

Alzheimer's disease; CLU; CR1; Genes; Next generation sequencing; PICALM

Indexed keywords

AGED; ALZHEIMER DISEASE; ARTICLE; CLU GENE; CR 1 GENE; FEMALE; GENE; GENE SEQUENCE; GENETIC VARIABILITY; HUMAN; HUMAN TISSUE; INDEL MUTATION; MALE; NEXT GENERATION SEQUENCING; NUCLEOTIDE REPEAT; PICALM GENE; SINGLE NUCLEOTIDE POLYMORPHISM; VALIDATION PROCESS;

EID: 84869769984     PISSN: None     EISSN: 19481756     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (4)

References (38)
  • 8
    • 65249131713 scopus 로고    scopus 로고
    • Rare variants of IFIH1, a gene implicated in antiviral responses, protect against type 1 diabetes
    • Nejentsev S, Walker N, Riches D, Egholm M and Todd JA. Rare variants of IFIH1, a gene implicated in antiviral responses, protect against type 1 diabetes. Science 2009; 324 387-389.
    • (2009) Science , vol.324 , pp. 387-389
    • Nejentsev, S.1    Walker, N.2    Riches, D.3    Egholm, M.4    Todd, J.A.5
  • 11
    • 79956314887 scopus 로고    scopus 로고
    • Genotype and SNP calling from next-generation sequencing data
    • Nielsen R, Paul JS, Albrechtsen A and Song YS. Genotype and SNP calling from next-generation sequencing data. Nat Rev Genet 2011; 12 443-451.
    • (2011) Nat Rev Genet , vol.12 , pp. 443-451
    • Nielsen, R.1    Paul, J.S.2    Albrechtsen, A.3    Song, Y.S.4
  • 13
    • 84858188091 scopus 로고    scopus 로고
    • An evaluation of different target enrichment methods in pooled sequencing designs for complex disease association studies
    • Day-Williams AG, McLay K, Drury E, Edkins S, Coffey AJ, Palotie A and Zeggini E. An evaluation of different target enrichment methods in pooled sequencing designs for complex disease association studies. PLoS ONE 2011; 6 e26279.
    • (2011) PLoS ONE , vol.6
    • Day-Williams, A.G.1    McLay, K.2    Drury, E.3    Edkins, S.4    Coffey, A.J.5    Palotie, A.6    Zeggini, E.7
  • 14
    • 83855165105 scopus 로고    scopus 로고
    • Repetitive DNA and next-generation sequencing computational challenges and solutions
    • Treangen TJ and Salzberg SL. Repetitive DNA and next-generation sequencing computational challenges and solutions. Nat Rev Genet 2012; 13 36-46.
    • (2012) Nat Rev Genet , vol.13 , pp. 36-46
    • Treangen, T.J.1    Salzberg, S.L.2
  • 16
    • 3242878193 scopus 로고    scopus 로고
    • ECR Browser a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes
    • Ovcharenko I, Nobrega MA, Loots GG and Stubbs L. ECR Browser a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes. Nucleic Acids Res 2004; 32 W280-286.
    • (2004) Nucleic Acids Res , vol.32
    • Ovcharenko, I.1    Nobrega, M.A.2    Loots, G.G.3    Stubbs, L.4
  • 17
    • 70450177746 scopus 로고    scopus 로고
    • BFAST an alignment tool for large scale genome resequencing
    • Homer N, Merriman B and Nelson SF. BFAST an alignment tool for large scale genome resequencing. PLoS ONE 2009; 4 e7767.
    • (2009) PLoS ONE , vol.4
    • Homer, N.1    Merriman, B.2    Nelson, S.F.3
  • 19
    • 78650568308 scopus 로고    scopus 로고
    • SAMStat monitoring biases in next generation sequencing data
    • Lassmann T, Hayashizaki Y and Daub CO. SAMStat monitoring biases in next generation sequencing data. Bioinformatics 2011; 27 130-131.
    • (2011) Bioinformatics , vol.27 , pp. 130-131
    • Lassmann, T.1    Hayashizaki, Y.2    Daub, C.O.3
  • 22
    • 77954202495 scopus 로고    scopus 로고
    • A statistical method for the detection of variants from next-generation resequencing of DNA pools
    • Bansal V. A statistical method for the detection of variants from next-generation resequencing of DNA pools. Bioinformatics 2010; 26 i318-324.
    • (2010) Bioinformatics , vol.26
    • Bansal, V.1
  • 23
    • 77955405475 scopus 로고    scopus 로고
    • Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
    • McLaren W, Pritchard B, Rios D, Chen Y, Flicek P and Cunningham F. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics 2010; 26 2069-2070.
    • (2010) Bioinformatics , vol.26 , pp. 2069-2070
    • McLaren, W.1    Pritchard, B.2    Rios, D.3    Chen, Y.4    Flicek, P.5    Cunningham, F.6
  • 26
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S and Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 2000; 132 365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 28
    • 79951993896 scopus 로고    scopus 로고
    • Tabix fast retrieval of sequence features from generic TAB-delimited files
    • Li H. Tabix fast retrieval of sequence features from generic TAB-delimited files. Bioinformatics 2011; 27 718-719.
    • (2011) Bioinformatics , vol.27 , pp. 718-719
    • Li, H.1
  • 33
    • 0035018479 scopus 로고    scopus 로고
    • Structurefunction relationships of complement receptor type 1
    • Krych-Goldberg M and Atkinson JP. Structurefunction relationships of complement receptor type 1. Immunol Rev 2001; 180 112-122.
    • (2001) Immunol Rev , vol.180 , pp. 112-122
    • Krych-Goldberg, M.1    Atkinson, J.P.2
  • 36
    • 60749100685 scopus 로고    scopus 로고
    • SNP frequency estimation using massively parallel sequencing of pooled DNA
    • Ingman M and Gyllensten U. SNP frequency estimation using massively parallel sequencing of pooled DNA. Eur J Hum Genet 2009; 17 383-386.
    • (2009) Eur J Hum Genet , vol.17 , pp. 383-386
    • Ingman, M.1    Gyllensten, U.2
  • 37
    • 79953325544 scopus 로고    scopus 로고
    • Efficient and cost effective population resequencing by pooling and in-solution hybridization
    • Bansal V, Tewhey R, Leproust EM and Schork NJ. Efficient and cost effective population resequencing by pooling and in-solution hybridization. PLoS ONE 2011; 6 e18353.
    • (2011) PLoS ONE , vol.6
    • Bansal, V.1    Tewhey, R.2    Leproust, E.M.3    Schork, N.J.4
  • 38
    • 0034817160 scopus 로고    scopus 로고
    • PCR amplification introduces errors into mononucleotide and dinucleotide repeat sequences
    • Clarke LA, Rebelo CS, Goncalves J, Boavida MG and Jordan P. PCR amplification introduces errors into mononucleotide and dinucleotide repeat sequences. Mol Pathol 2001; 54 351-353.
    • (2001) Mol Pathol , vol.54 , pp. 351-353
    • Clarke, L.A.1    Rebelo, C.S.2    Goncalves, J.3    Boavida, M.G.4    Jordan, P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.