SAMStat: Monitoring biases in next generation sequencing data

Bioinformatics

Volumn 27, Issue 1, 2011, Pages 130-131

  Lassmann, Timo ^a   Hayashizaki, Yoshihide ^a   Daub, Carsten O ^a  

^a RIKEN YOKOHAMA INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME MAP; COMPUTER PROGRAM; GENOME; GENOMICS; HIGH THROUGHPUT SEQUENCING; METHODOLOGY; SEQUENCE ALIGNMENT;

CHROMOSOME MAPPING; GENOME; GENOMICS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; SEQUENCE ALIGNMENT; SOFTWARE;

EID: 78650568308     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq614     Document Type: Article

References (8)

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2. Cock,P.J. et al. (2009) The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res., 38, 1767-1771.
3. Frith,M.C. et al. (2008) A code for transcription initiation in mammalian genomes. Genome Res., 18, 1-12.
4. Li,H. and Durbin,R. (2009) Fast and Accurate Short Read Alignment with Burrows-Wheeler Transform. Bioinformatics, 25, 1754-1760.
5. Li,H. et al. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
6. Li,H. et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
7. Plessy,C. et al. (2010) Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan. Nat. Methods, 7, 528-534.
8. Trapnell,C. and Salzberg,S.L. (2009) How to map billions of short reads onto genomes. Nat. Biotechnol., 27, 455-457.