DNA - novel nanomaterial for applications in photonics and in electronics

Comptes Rendus Physique

Volumn 13, Issue 8, 2012, Pages 853-864

  Rau, Ileana ^a   Grote, James G ^b   Kajzar, Francois ^a,c   Pawlicka, Agnieszka ^d  

^a UNIVERSITY POLITEHNICA OF BUCHAREST   (Romania)

^b AIR FORCE RESEARCH LABORATORY   (United States)

^c UNIVERSITÉ D'ANGERS   (France)

^d UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

Deoxyribonucleic acid; DNA CTMA complex; Functionalized DNA CTMA; NLO properties; Solid electrochromic cells; Third harmonic generation

Indexed keywords

EID: 84869151575     PISSN: 16310705     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.crhy.2012.09.005     Document Type: Short Survey

References (101)

1. Watson J.D., Crick F.H.C. Molecular structure of nucleic acids. A structure for deoxyribose nucleic acid. Nature 1953, 171:737-738.
2. Crick F.H.C., Watson J.D. The complementary structure of deoxyribonucleic acid. Proc. Royal Soc. (London) 1954, 223:80-96.
3. Manning G.S. The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides. Q. Rev. Biophys. 1978, 11(2):179-246.
4. http://dwb4.unl.edu/Chem/CHEM869N/CHEM869NLinks/chemistry.about.com/science/chemistry/library/weekly/aa061598a.htm.
5. Moldoveanu M., Meghea A., Popescu R., Grote J.G., Kajzar F., Rau I. On the stability and degradation of DNA based thin films. Mol. Cryst. Liq. Cryst. 2010, 522. 180/[480]-190/[490].
6. Moldoveanu M., Popescu R., Pîrvu C., Grote J.G., Kajzar F., Rau I. Biopolymer thin films for optoelectronics applications. Mol. Cryst. Liq. Cryst. 2010, 522:530-539.
7. Hayes R.A., Feenstra B.J. Video-speed electronic paper based on electrowetting. Nature 2003, 425(6956):383-385.
8. Nogi M., Yano H. Transparent nanocomposites based on cellulose produced by bacteria offer potential innovation in the electronics device industry. Adv. Mater. 2008, 20:1849-1852.
9. Vizard D.L., White R.A., Ansevin A.T. Comparison of theory to experiment for DNA thermal denaturation. Nature 1978, 275:250-251.
10. SantaLucia J. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad. Sci. USA 1998, 95(4):1460-1465. PMID 9465037. doi:10.1073/pnas.95.4.1460.
11. Wang L., Yoshida J., Ogata N. Self-assembled supramolecular films derived from marine deoxyribonucleic acid (DNA)-cationic surfactant complexes: Large-scale preparation and optical and thermal properties. Chem. Mater. 2001, 13:1273-1281.
12. Wang L., Zhang G., Horinouchi S., Yoshida J., Ogata N. Optoelectronic materials derived from salmon deoxyribonucleic acid. Nonl. Opt. 2000, 24:63-68.
13. Watanuki A., Yoshida J., Kobayashi S., Ikeda H., Ogata N. Optical and photochromic properties of spiropyran-doped marine-biopolymer DNA-surfactant complex films. Proc. SPIE 2005, 5724:234-241.
14. Koyama T., Kawabe Y., Ogata N. Electroluminescence as a probe for electrical and optical properties of deoxyribonucleic acid. Proc. SPIE 2002, 4464:248-255.
15. Yoshida J., Wang L., Kobayashi S., Zhang G., Ikeda H., Ogata N. Optical properties of photochromic-compound-doped marine-biopolymer DNA-surfactant complex films for switching applications. Proc. SPIE 2004, 5351:260.
16. Wagenknecht H.-A. Ladungstransferprozesse durch die DNA. Chem. Unserer Zeit 2002, 36:318-330.
17. Heckman E.M., Hagen J.A., Yaney P.P., Grote J.G., Hopkins F.K. Processing techniques for deoxyribonucleic acid: Biopolymer for photonics applications. Phys. Lett. 2005, 87:1.
18. Grote J.G., Hagen J., Zetts J., Nelson R., Diggs D., Stone M., Yaney P., Heckman E., Zhang C., Steier W., Jen A., Dalton L., Ogata N., Curley M., Clarson S., Hopkins F. Investigation of polymers and marine-derived DNA in optoelectronics. J. Phys. Chem. B 2004, 108(25):8584-8591.
19. Hagen J., Grote J., Ogata N., Zetts J., Nelson R., Diggs D., Hopkins F., Yaney P., Dalton L., Clarson S. DNA photonics. Proc. SPIE 2004, 5351:77-86.
20. E. Bajer, Modyfikacja DNA dla zastosowań w optyce nieliniowej (Modification of DNA for application in nonlinear optics), Master thesis, Cracow University of Technology, Poland, 2010.
21. Hung Y.-C, Lin T.-Y., Hsu W.-T, Chiu Y.-W., Wang Y.-S., Fruk L. Functional DNA biopolymers and nanocomposite for optoelectronic applications. Opt. Mater. 2012, 34:1208-1213.
22. Samoc A., Samoc M., Grote J.G., Miniewicz A., Luther-Davies B. Optical properties of deoxyribonucleic acid (DNA) polymer host. Proc. SPIE 2006, 6401. 6 pp.
23. J. Grote, Biopolymer materials show promise for electronics and photonics applications, SPIE Newsroom, (2008). doi:10.1117/2.1200805.1082.
24. Heckman E., Yaney P., Grote J., Hopkins F. Poling and optical studies of DNA NLO waveguides. Proc. SPIE 2005, 5934. 0810-087.
25. Heckman E.M., Grote J.G., Yaney P.P., Hopkins K.F. DNA-based nonlinear photonic materials. Proc. SPIE 2004, 5516:47. doi:10.1117/12.563071.
26. Heckman E., Yaney P., Grote J., Hopkins F., Tomczak M. Development of an all-DNA-surfactant electro-optic modulator. Proc. SPIE 2006, 6117. 0K1-0K7.
27. Heckman E.M., Yaney P.P., Grote J.G., Hopkins K.F. Development and performance of an all-DNA-based electro-optic waveguide modulator. Proc. SPIE 2006, 6401:640108. 10 pp.
28. Heckman E., Grote J., Hopkins F., Yaney P. Performance of an electro-optic waveguide modulator fabricated using a deoxyribonucleic-acid-based biopolymer. Appl. Phys. Lett. 2006, 89:181116.
29. Rau I., Czaplicki R., Derkowska B., Grote J.G., Kajzar F., Krupka O., Sahraoui B. Nonlinear optical properties of functionalized DNA-CTMA complexes. Nonl. Opt. Quant. Opt. 2011, 43:283-323.
30. Yumusak C., Singh Th.B., Sariciftci N.S., Grote J.G. Bio-organic field effect transistors based on crosslinked deoxyribonucleic acid DNA gate dielectric. Appl. Phys. Lett. 2009, 95(26):263304. 3 pp.
31. Yaney P.P., Heckman E.M., Grote J.G. Resistivity and electric-field poling behaviors of DNA-based polymers compared to selected non-DNA polymers. Proc. SPIE 2007, 6646:664601.
32. Firmino A., Grote J.G., Kajzar F., Rau I., Pawlicka A. Application of DNA in electrochromic cells with switchable transmission. Nonl. Opt. Quant. Opt. 2011, 42:181-202.
33. Pawlicka A., Sentanin F., Firmino A., Grote J.G., Kajzar F., Rau I. Ionically conducting DNA-based membranes for eletrochromic devices. Synth. Met. 2011, 161:2329-2334.
34. Hebda E., Jancia M., Kajzar F., Niziol J., Pielichowski J., Rau I., Tane A. Optical properties of thin films of DNA-CTMA and DNA-CTMA doped with Nile blue. Mol. Cryst. Liq. Cryst. 2012, 556(1):309-316. doi:10.1080/15421406.2012.642734.
35. Grote J.G., Ogata N., Diggs D.E., Hopkins F.K. Deoxyribonucleic acid (DNA) cladding layers for nonlinear-optic-polymer-based electro-optic devices. Proc. SPIE 2003, 4991:621.
36. Knoesen A. Second order optical nonlinearity in single and triple helical protein supramolecular assemblies. Nonl. Opt. Quant. Opt.: Concepts in Modern Optics 2009, 38(3-4):213-225.
37. Rau I., Czaplicki R., Derkowska B., Grote J.G., Kajzar F., Krupka O., Sahraoui B. Nonlinear optical properties of functionalized DNA-CTMA complexes. Nonl. Opt. Quant. Opt. 2011, 42:283-324.
38. Shen Y.R. The Principles of Nonlinear Optics 2003, Wiley, New York.
39. Boman F.C., Gibbs-Davis J.M., Heckman L.M., Stepp B.R., Nguyen S.T., Geiger F.M. DNA at aqueous/solid interfaces: chirality-based detection via second harmonic generation activity. J. Am. Chem. Soc. 2009, 844-848.
40. Zhuang Zheng-Fei, Liu Han-Ping, Guo Zhou-Yi, Zhuo Shuang-Mu, Yu Bi-Ying, Deng Xiao-Yuan Second-harmonic generation as a DNA malignancy indicator of prostate glandular epithelial cells. Chin. Phys. B 2010, 19(5):4950.
41. Williamson W., Wang Y., Lee S.A., Simon H.J., Rupprecht A. Observation of optical second harmonic generation in wet-spun films of Na-DNA. Spectrosc. Lett. 1993, 26(5):849-858.
42. Sioncke S., Verbiest T., Persoons A. Second-order nonlinear optical properties of chiral materials. Mater. Sci. Eng. R 2003, 42:115-155.
43. Pörschke D. Molecular Electro-optic Properties of Macromolecules and Colloids in Solution 1981, Plenum Press, New York. S. Krause (Ed.).
44. Yamaoka K., Fukudome K. Electric field orientation of nucleic acids in aqueous solutions. 1. Dependence of steady-state electric birefringence of rodlike DNA on field strength and the comparison with new theoretical orientation functions. J. Phys. Chem. 1988, 92:4994-5001.
45. Yamaoka K., Fukudome K. Electric field orientation of nucleic acids in aqueous solutions. 2. Dependence of the intrinsic electric dichroism and electric dipole moments of rodlike DNA on molecular weight and ionic strength. J. Phys. Chem. 1990, 94:6896-6903.
46. Yamaoka K., Fukudome K., Matsuda K. Electric field orientation of nucleic acids in aqueous solutions. 3. Non-Kerr-law behavior of high molecular weight DNA at weak fields as revealed by electric birefringence and electric dichroism. J. Phys. Chem. 1992, 96(17):7131-7136.
47. O'Konski C.T., Stellwagen N.C. Structural transition produced by electric fields in aqueous sodium deoxyribonucleate. Biophys. J. 1965, 5(4):607-613.
48. Pörschke D. A conformation change of single stranded polyriboadenyiate induced by an electric field. Nucleic Acids Res. 1974, 1:1601-1618.
49. Neumann E., Werner E., Spratke A., Krüger K. Colloid and Molecular Electro-Optics 1993, Institute of Physics Publ., Bristol. B.R. Jennings, S.P. Stoyov (Eds.).
50. Large M.C.J., Blau W., Croke D.T., McWilliam P., Kajzar F. Application of nonlinear optical techniques to the study of biological molecules. Nonl. Opt. 1996, 15:463.
51. Large M.C.J., Croke D.T., Blau W.J., McWilliam P., Kajzar F. EFISH in electrolyte and polyelectrolyte systems. Mol. Cryst. Liq. Cryst., Sci. Technol., Sect. B: Nonl. Opt. 1995, 12(3):225-238.
52. Large M., Croke D.T., Blau W., McWilliam P., Kajzar F. Molecular length dependent type polarizability. Proc. SPIE 1996, vol. 2852:36. G. Möhlmann (Ed.).
53. Samoc M., Samoc A., Grote J.G. Complex nonlinear refractive index of DNA. Chem. Phys. Lett. 2006, 431(1-3):132-134.
54. Derkowska B., Wojdyla M., Bala W., Jaworowicz K., Karpierz M., Grote J.G., Krupka O., Kajzar F., Sahraoui B. Influence of different peripheral substituents on the nonlinear optical properties of cobalt phthalocyanine core. J. Appl. Phys. 2007, 101(8). 083112, 8 pp.
55. Rau I., Krupka O., Grote J.G., Kajzar F., Sahraoui B. Nonlinear optical properties of functionalized DNA. J. Comput. Methods Sci. Eng. 2010, 10:531-543. doi:10.3233/JCM20100341.
56. Pawlik G., Mitus A.C., Mysliwiec J., Miniewicz A., Grote J.G. Photochromic dye semi-intercalation into DNA-based polymeric matrix: Computer modeling and experiment. Chem. Phys. Lett. 2010, 484:321.
57. Rau I., Kajzar F., Luc J., Sahraoui B., Boudebs G. Comparison of Z-scan and THG derived nonlinear index of refraction in selected organic solvents. J. Opt. Soc. Am. B 2008, 25(10):1738-1747.
58. Orr B.J., Ward J.F. Perturbation theory of the non-linear optical polarization of an isolated system. Mol. Phys. 1971, 20:513-526.
59. Kuzyk M.G. Fundamental limits on third-order molecular susceptibilities. Opt. Lett. 2000, 25:1183-1185.
60. Duchesne J., Depireux J., Bertinchamps A., Cornet N., Vanderkaa J.M. Thermal and electrical properties of nucleic acids and proteins. Nature 1960, 188:405-406.
61. Genereux J.C., Barton J.K. Mechanism for DNA charge transport. Chem. Rev. 2010, 110:1642-1662.
62. Lakhno V.D. The problem of DNA conductivity. Pisma ETSCHAIA 2008, 5(3):400-406.
63. Eley D.D., Spivey D.I. Semiconductivity of organic substances. 9. Nucleic acid in dry state. Trans. Faraday Soc. 1962, 58(470):411-417.
64. Eley D.D. Organic Semiconducting Polymers 1968, 259. Marcel Dekker, New York, USA. J.E. Katon (Ed.).
65. Endres R.G., Cox D.L., Singh R.R.P. The quest for high-conductance DNA. Rev. Mod. Phys. 2004, 76:195.
66. Wang Q., Fiebig T. Charge Migration in DNA: Perspectives from Physics, Chemistry, and Biology 2007, 221-248. Springer, Berlin, Germany. T. Chakraborty (Ed.).
67. De Pablo P.J., Moreno-Herrero F., Colchero J., Gomez Herrero J., Herrero P., Baró A.M., Ordejó P.N., Soler J.M., Artacho E. Absence of DC conductivity in DNA. Phys. Rev. Lett. 2000, 85:4992-4995.
68. Yoo K.-H., Ha D.H., Lee J.-O., Park J.W., Kim J., Kim J.J., Lee H.-Y., Kawai T., Choi H.Y. Electrical conduction through poly(dA)-poly(dT) and poly(dG)-poly(dC) DNA molecules. Phys. Rev. Lett. 2001, 87:198102.
69. Kasumov A.Yu., Kociak M., Guéron S., Reulet B., Volkov V.T., Klinov D.V., Bouchiat H. Proximity-induced superconductivity in DNA. Science 2001, 291(5502):280-282.
70. Storm A.J., van Noort J., de Vries S., Dekker C. Insulating behavior for DNA molecules between nanoelectrodes at the 100 nm length scale. Appl. Phys. Lett. 2001, 79:3881.
71. Fink H.W., Schonenberger C. Electrical conduction through DNA molecules. Nature 1999, 398:407-409.
72. Porath D., Bezryadin A., de Vries S., Dekker C. Direct measurement of electrical transport through DNA molecules. Nature 2000, 403(6770):635-638.
73. Genereux J.C., Boal A.K., Barton J.K. DNA-mediated charge transport in redox sensing and signaling. J. Am. Chem. Soc. 2010, 132:891-905.
74. Sun M.Y., Pejanovic S., Mijovic J. Dynamics of deoxyribonucleic acid solutions as studied by dielectric relaxation spectroscopy and dynamic mechanical spectroscopy. Macromolecules 2005, 38:9854-9864. doi:10.1021/ma051596j.
75. Pawlicka A., Firmino A., Vieira D., Grote J.G., Kajzar F. Gelatin- and DNA-based ionic conducting membranes for electrochromic devices. Proc. SPIE 2009, 7487. 74870J, 10 pp.
76. Firmino A., Grote J.G., Kajzar F., M'Peko J.-C., Pawlicka A. DNA-based ionic conducting membranes. J. Appl. Phys. 2011, 10. 033704-5.
77. Gray F.M. Solid Polymer Electrolytes: Fundamentals and Technological Applications 1991, VCH Publishers Inc.
78. Czaplicki R., Krupka O., Essaidi Z., El-Ghayoury A., Kajzar F., Grote J.G., Sahraoui B. Grating inscription in picosecond regime in thin films of functionalized DNA. Opt. Express. Nat. Photonics 2007, 2:6-15273. highlighted in:.
79. Wang L., Ishihara K., Izumi H., Wada M., Zhang G., Ishikawa T., Watanabe A., Horinouchi S., Ogata N. Strongly luminescent rare-earth ion-doped DNA-CTMA complex film and fiber materials. Proc. SPIE 2002, 4905:143-152.
80. Hagen J.A., Li W., Steckl A.J., Grote J.G. Enhanced emission efficiency in organic light-emitting diodes using deoxyribonucleic acid complex as an electron blocking layer. Appl. Phys. Lett. 2006, 88:171109.
81. Steckl A.J. DNA - a new material for photonics. Nat. Photonics 2007, 1:3-5.
82. Grote J.G., Heckman E.M., Hagen J.A., Yaney P.P., Diggs G., Subramanyam G., Nelson R.L., Zetts J.S., Zang D.Y., Singh B., Sariciftci N.S., Hopkins F.K. DNA: new class of polymer. Proc. SPIE 2006, 6117. 61170J-6.
83. Nakamura K., Ishikawa T., Nishioka D., Ushikubo T., Kobayashi N. Color-tunable multilayer organic light emitting diode composed of DNA complex and tris 8-hydroxyquinolinato aluminium. Appl. Phys. Lett. 2010, 97:193301.
84. Kobayashi N. BiOLED with DNA/conducting polymer complex as active layer. Nonl. Opt. Quant. Opt. 2011, 43:233-251.
85. Subramanyam G., Bartsch C.M., Grote J.G., Naik R.R., Brott L., Stone M., Campbell A. Effect of external electrical stimuli on DNA based biopolymers. Nano 2009, 4(2):1-8.
86. Kawabe Y., Wang L., Koyama T., Horinouchi S., Ogata N. Light amplification in dye doped DNA-surfactant complex films. Proc. SPIE 2000, 4106:369-376.
87. Kawabe Y., Wang L., Horinouchi S., Ogata N. Amplified spontaneous emission from fluorescent dye-doped DNA-surfactant films. Adv. Mater. 2000, 12:1281-1283.
88. Myśliwiec J., Sznitko L., Sobolewska A.M., Bartkiewicz S., Miniewicz A. Lasing effect in a hybrid dye-doped biopolymer and photochromic polymer system. Appl. Phys. Lett. 2010, 96:141106. 3 pp.
89. Mysliwiec J., Sznitko L., Miniewicz A., Kajzar F., Sahraoui B. Study of the amplified spontaneous emission in a dye-doped biopolymer-based material. J. Phys. D: Appl. Phys. 2009, 42(8). 085101.
90. Leonetti M., Sapienza R., Ibisate M., Conti C., Lopez C. Optical gain in DNA-DCM, for lasing in photonic materials. Opt. Lett. 2009, 34(24):3764-3766. doi:10.1364/OL.34.003764.
91. Sznitko L., Myśliwiec J., Karpiński P., Palewska K., Parafiniuk K., Bartkiewicz S., Rau I., Kajzar F., Miniewicz A. Biopolymer based system doped with nonlinear optical dye as a medium for amplified spontaneous emission and lasing. Appl. Phys. Lett. 2011, 99(3). 031107, 3 pp.
92. Kawabe Y., Sakai K.-I. DNA based solid-state dye lasers. Nonl. Opt. Quant. Opt. 2011, 43:273-282.
93. Mysliwiec J., Sznitko L., Bartkiewicz S., Miniewicz A., Essaidi Z., Kajzar F., Sahraoui B. Amplified spontaneous emission in the spiropyran-biopolymer based system. Appl. Phys. Lett. 2009, 94:241106. 3 pp.
94. He G.S., Zheng Q., Prasad P.N., Grote J.G., Hopkins F.K. Infrared two-photon-excited visible lasing from a DNA-surfactant-chromophore complex. Opt. Lett. 2006, 31:359-361.
95. Mysliwiec J., Miniewicz A., Rau I., Krupka O., Sahraoui B., Kajzar F., Grote J. Biopolymer-based material for optical phase conjugation. J. Optoelectron. Adv. Mater. 2008, 10(8):2146-2150.
96. Myśliwiec J., Ziemienczuk M., Miniewicz A. Pulsed laser induced birefringence switching in a biopolymer matrix containing azo-dye molecules. Opt. Mater. 2011, 33:1382-1386.
97. Yaney P., Heckman E., Diggs D., Hopkins F., Grote J. Development of chemical sensors using polymer optical waveguides fabricated with DNA. Proc. SPIE 2005, 5724:224-233.
98. Iosub I., Kajzar F., Makowska-Janusik M., Aurelia Meghea A., Tane A., Rau I. Electronic structure and optical properties of some anthocyanins extracted from grapes. Opt. Mater. 2012, 34(10):1644-1650.
99. Mojzisova H., Olesiak J., Zielinski M., Matczyszyn K., Chauvat D., Zyss J. Polarization-sensitive two-photon microscopy study of the organization of liquid-crystalline DNA. Biophys. J. 2009, 97:2348-2357.
100. Ogata N., Yamaoka K. DNA-lipid hybrid films derived from chiral lipids. Polym. J. 2008, 40(3):186-191.
101. Yaney P., Heckman E., Davis A., Hagen J., Bartsch C., Subramanyam G., Grote J., Hopkins F. Characterization of NLO polymer materials for optical waveguide structures. Proc. SPIE 2006, 6117. 0W1-0W14.