A Toolkit for bulk PCR-based marker design from next-generation sequence data: Application for development of a framework linkage map in bulb onion (Allium cepa L.)

BMC Genomics

Volumn 13, Issue 1, 2012, Pages

  Baldwin, Samantha ^a   Revanna, Roopashree ^a   Thomson, Susan ^a   Pither Joyce, Meeghan ^a   Wright, Kathryn ^a   Crowhurst, Ross ^a   Fiers, Mark ^a   Chen, Leshi ^b   Macknight, Richard ^a,c   McCallum, John A ^a  

^a THE NEW ZEALAND INSTITUTE FOR PLANT AND FOOD RESEARCH LIMITED   (New Zealand)

^b LINCOLN UNIVERSITY   (New Zealand)

^c UNIVERSITY OF OTAGO   (New Zealand)

Author keywords

Genetic mapping; Marker; Next generation sequencing; Onion; SNP

Indexed keywords

COMPLEMENTARY DNA; GENOMIC DNA;

ARTICLE; BIOINFORMATICS; CHROMOSOME 8; COMPUTER MODEL; CONTROLLED STUDY; DNA LIBRARY; GALAXY WORKFLOW ENVIRONMENT; GENE LOCUS; GENE SEQUENCE; GENETIC LINKAGE; GENETIC MARKER; GENOTYPE; GERMPLASM; HETEROZYGOSITY; HOMOZYGOSITY; INFORMATION RETRIEVAL; NONHUMAN; NUCLEOTIDE SEQUENCE; ONION; PLANT CHROMOSOME; PLANT GENOME; PLANT LEAF; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT LOCUS; SHOOT; SINGLE NUCLEOTIDE POLYMORPHISM; UNINDEXED SEQUENCE; WEB BROWSER;

CHROMOSOME MAPPING; CHROMOSOMES, PLANT; GENE LIBRARY; GENETIC LINKAGE; GENETIC MARKERS; GENOME, PLANT; HAPLOIDY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HOMOZYGOTE; INDEL MUTATION; MICROSATELLITE REPEATS; ONIONS; PLANT LEAVES; PLANT SHOOTS; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT LOCI; SOFTWARE; TRANSCRIPTOME;

ALLIUM CEPA;

EID: 84869112419     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-637     Document Type: Article

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