Single nucleotide polymorphisms, indels, and simple sequence repeats for onion cultivar identification

Journal of the American Society for Horticultural Science

Volumn 130, Issue 6, 2005, Pages 912-917

  Jakše, Jernej ^a,b   Martin, William ^a   McCallum, John ^c   Havey, Michael J ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSITY OF LJUBLJANA   (Slovenia)

^c THE NEW ZEALAND INSTITUTE FOR PLANT AND FOOD RESEARCH LIMITED   (New Zealand)

Author keywords

Allium cepa; Expressed sequence tags; Neighbor joining; UPGMA

Indexed keywords

ALLIUM CEPA;

EID: 27744581835     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.130.6.912     Document Type: Article

References (15)

1. Arumuganathan, K. and E. Earle. 1991. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rpt. 9:208-218.
2. Bark, O.H. and M.J. Havey. 1995. Similarities and relationships among open-pollinated populations of the bulb onion as estimated by nuclear RFLPs. Theor. Appl. Genet. 90:607-614.
3. Bradeen, J.M. and M.J. Havey. 1995. Randomly amplified polymorphic DNA in bulb onion and its use to assess inbred integrity. J. Amer. Soc. Hort. Sci. 120:752-758.
4. Fischer, D. and K. Bachmann. 2000. Onion microsatellites for germplasm analysis and their use in assessing intra- and interspecific relatedness within the subgenus Rhizirideum. Theor. Appl. Genet. 101:153-164.
5. Gökçe, A.F. 2001. Molecular tagging of male fertility restoration locus and its selection in onion (Allium cepa L.). PhD Diss., Univ. of Wisconsin, Madison.
6. Goldman, I.L., G. Schroeck, and M.J. Havey. 2000. History of public onion breeding programs and pedigree of public onion germplasm releases in the United States. Plant Breeding Rev. 20:67-103.
7. Heusden, A.W. van, M. Shigyo, Y. Tashiro, R. Vrielink van Ginkel, and C. Kik. 2000. AFLP linkage group assignment to the chromosomes of Allium cepa L. via monosomic addition lines. Theor. Appl. Genet. 100:480-486.
8. King, J.J., J.M. Bradeen, and M.J. Havey. 1998. Variability for RFLPs and relationships among elite commercial inbred and virtual hybrid populations of onion. J. Amer. Soc. Hort. Sci. 123:1034-1037.
9. Kuhl, J.C., F. Cheung, Q. Yuan, W. Martin, Y. Zewdie, J. McCallum, A. Catanach, P. Rutherford, K.C. Sink, M. Jenderek, J.P. Prince, C.D. Town, and M.J. Havey. 2004. A unique set of 11,008 onion (Allium cepa) ESTs reveals expressed sequence and genomic differences between monocot orders Asparagales and Poales. Plant Cell 16:114-125.
10. Lilly, J.W. and M.J. Havey. 2001. Short repetitive motifs contributed significantly to the huge mitochondrial genome of cucumber. Genetics 159:317-328.
11. Martin, W., J. McCallum, M. Shigyo, J. Jakse, J.C. Kuhl, N. Yamane, K.C. Sink, C.D. Town, and M.J. Havey. 2005. Genetic mapping of expressed sequences in onion and in silico comparisons show scant collinearity with rice. Mol. Genet. Genomics (In Press).
12. Rohlf, F.J. 1993. NTSYS-pc: Numerical taxonomy and multivariate analysis system. Exeter Software, Setauket, New York.
13. Schuelke, M. 2000. An economic method for the fluorescent labeling of PCR fragments: A poor man's approach to genotyping for research and high-throughput diagnostics. Nature Biotech. 18:233-234.
14. Thiel, T., W. Michalek, R.K. Varshney, and A. Graner. 2003. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor. Appl. Genet. 106:411-422.
15. Xin, Z., J. Chen, and J. Burke. 2004. A low cost high efficient method for genetic mapping using indel markers. Poster abstract 227. Plant and Animal Genomes 12 Conf., San Diego, Calif. 22 Feb. 2005. 〈http://www.intl-pag.org/ 12/abstracts/P3b_PAG12_227.html〉.