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Volumn 7, Issue 11, 2012, Pages

Next-Generation Sequencing for Rodent Barcoding: Species Identification from Fresh, Degraded and Environmental Samples

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME B;

EID: 84868712884     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0048374     Document Type: Article
Times cited : (87)

References (89)
  • 1
    • 25144493056 scopus 로고    scopus 로고
    • Species concepts, species boundaries and species identification: a view from the tropics
    • Balakrishnan R, (2005) Species concepts, species boundaries and species identification: a view from the tropics. Syst Biol 54: 689-693.
    • (2005) Syst Biol , vol.54 , pp. 689-693
    • Balakrishnan, R.1
  • 2
    • 84902274732 scopus 로고    scopus 로고
    • Why should we care about species
    • Hey J, (2009) Why should we care about species? Nature Education 2.
    • (2009) Nature Education , vol.2
    • Hey, J.1
  • 3
    • 84859561106 scopus 로고    scopus 로고
    • Noninvasive molecular methods to identify live scarab larvae: an example of sympatric pest and nonpest species in New Zealand
    • Lefort MC, Boyer S, Worner SP, Armstrong K, (2011) Noninvasive molecular methods to identify live scarab larvae: an example of sympatric pest and nonpest species in New Zealand. Mol Ecol Resour 12: 389-395.
    • (2011) Mol Ecol Resour , vol.12 , pp. 389-395
    • Lefort, M.C.1    Boyer, S.2    Worner, S.P.3    Armstrong, K.4
  • 4
    • 84857279330 scopus 로고    scopus 로고
    • Use of DNA barcodes to identify invasive armyworm spodoptera species in Florida
    • Nagoshi RN, Brambila J, Meagher RL, (2011) Use of DNA barcodes to identify invasive armyworm spodoptera species in Florida. J Insect Sci 11: 154.
    • (2011) J Insect Sci , vol.11 , pp. 154
    • Nagoshi, R.N.1    Brambila, J.2    Meagher, R.L.3
  • 5
    • 77958485246 scopus 로고    scopus 로고
    • DNA barcodes reveal species-specific mercury levels in tuna sushi that pose a health risk to consumers
    • Lowenstein JH, Burger J, Jeitner CW, Amato G, Kolokotronis SO, et al. (2010) DNA barcodes reveal species-specific mercury levels in tuna sushi that pose a health risk to consumers. Biol Lett 6: 692-695.
    • (2010) Biol Lett , vol.6 , pp. 692-695
    • Lowenstein, J.H.1    Burger, J.2    Jeitner, C.W.3    Amato, G.4    Kolokotronis, S.O.5
  • 6
    • 4344568438 scopus 로고    scopus 로고
    • The expansion of conservation genetics
    • DeSalle R, Amato G, (2004) The expansion of conservation genetics. Nat Rev Genet 5: 702-712.
    • (2004) Nat Rev Genet , vol.5 , pp. 702-712
    • DeSalle, R.1    Amato, G.2
  • 7
    • 84863052564 scopus 로고    scopus 로고
    • Sagebrush identification, ecology, and palatability relative to Sage-Grouse
    • Rosentreter R, (2004) Sagebrush identification, ecology, and palatability relative to Sage-Grouse. USDA Forest Service Proceedings pp. 1-14.
    • (2004) USDA Forest Service Proceedings , pp. 1-14
    • Rosentreter, R.1
  • 8
    • 0031695493 scopus 로고    scopus 로고
    • Species identification using genetic tools: the value of nuclear and mitochondrial gene sequences in whale conservation
    • Palumbi SR, Cipriano F, (1998) Species identification using genetic tools: the value of nuclear and mitochondrial gene sequences in whale conservation. J Hered 89: 459-464.
    • (1998) J Hered , vol.89 , pp. 459-464
    • Palumbi, S.R.1    Cipriano, F.2
  • 9
    • 84856121203 scopus 로고    scopus 로고
    • Still not enough taxonomists: reply to Joppa et al
    • Bacher S, (2012) Still not enough taxonomists: reply to Joppa et al. Trends Ecol Evol 27: 65-66.
    • (2012) Trends Ecol Evol , vol.27 , pp. 65-66
    • Bacher, S.1
  • 11
    • 77953322042 scopus 로고    scopus 로고
    • Identifying coral reef fish larvae through DNA barcoding: a test case with the families Acanthuridae and Holocentridae
    • Hubert N, Delrieu-Trottin E, Irisson JO, Meyer C, Planes S, (2010) Identifying coral reef fish larvae through DNA barcoding: a test case with the families Acanthuridae and Holocentridae. Mol Phylogenet Evol 55: 1195-1203.
    • (2010) Mol Phylogenet Evol , vol.55 , pp. 1195-1203
    • Hubert, N.1    Delrieu-Trottin, E.2    Irisson, J.O.3    Meyer, C.4    Planes, S.5
  • 12
    • 0141831017 scopus 로고    scopus 로고
    • Extreme reversed sexual size dimorphism in the extinct New Zealand moa Dinornis
    • Bunce M, Worthy TH, Ford T, Hoppitt W, Willerslev E, et al. (2003) Extreme reversed sexual size dimorphism in the extinct New Zealand moa Dinornis. Nature 425: 172-175.
    • (2003) Nature , vol.425 , pp. 172-175
    • Bunce, M.1    Worthy, T.H.2    Ford, T.3    Hoppitt, W.4    Willerslev, E.5
  • 13
    • 0036189327 scopus 로고    scopus 로고
    • Sand-dwellers in rocky habitats: a new species of Gerbillus (Mammalia: Rodentia) from Mali
    • Granjon L, Aniskin VM, Volobouev V, Sicard B, (2002) Sand-dwellers in rocky habitats: a new species of Gerbillus (Mammalia: Rodentia) from Mali. J Zool 256: 181-190.
    • (2002) J Zool , vol.256 , pp. 181-190
    • Granjon, L.1    Aniskin, V.M.2    Volobouev, V.3    Sicard, B.4
  • 14
    • 0041826762 scopus 로고    scopus 로고
    • Species identification of rhinoceros horns using the cytochrome b gene
    • Hsieh HM, Huang LH, Tsai LC, Kuo YC, Meng HH, et al. (2003) Species identification of rhinoceros horns using the cytochrome b gene. Forensic Sci Int 136: 1-11.
    • (2003) Forensic Sci Int , vol.136 , pp. 1-11
    • Hsieh, H.M.1    Huang, L.H.2    Tsai, L.C.3    Kuo, Y.C.4    Meng, H.H.5
  • 16
    • 78650604323 scopus 로고    scopus 로고
    • After 7 years and 1000 citations: Comparative assessment of the DNA barcoding and the DNA taxonomy proposals for taxonomists and non-taxonomists
    • Teletchea F, (2010) After 7 years and 1000 citations: Comparative assessment of the DNA barcoding and the DNA taxonomy proposals for taxonomists and non-taxonomists. Mitochondrial DNA 21: 206-226.
    • (2010) Mitochondrial DNA , vol.21 , pp. 206-226
    • Teletchea, F.1
  • 17
    • 0037492478 scopus 로고    scopus 로고
    • Can you bank on GenBank
    • Harris JD, (2003) Can you bank on GenBank? Trends Ecol Evol 18: 317-319.
    • (2003) Trends Ecol Evol , vol.18 , pp. 317-319
    • Harris, J.D.1
  • 18
    • 42949128004 scopus 로고    scopus 로고
    • Molecular identification of vertebrate species by oligonucleotide microarray in food and forensic samples
    • Télétchéa F, Bernillon J, Duffraisse M, Laudet V, Hänni C, (2008) Molecular identification of vertebrate species by oligonucleotide microarray in food and forensic samples. J Appl Ecol 45: 967-975.
    • (2008) J Appl Ecol , vol.45 , pp. 967-975
    • Télétchéa, F.1    Bernillon, J.2    Duffraisse, M.3    Laudet, V.4    Hänni, C.5
  • 19
    • 0035205972 scopus 로고    scopus 로고
    • A test of the genetic species concepts: cytochrome-b sequences and mammals
    • Bradley R, Baker R, (2001) A test of the genetic species concepts: cytochrome-b sequences and mammals. J Mammal 82: 960-973.
    • (2001) J Mammal , vol.82 , pp. 960-973
    • Bradley, R.1    Baker, R.2
  • 20
    • 33845914892 scopus 로고    scopus 로고
    • A genomic perspective on the shortcomings of mitochondrial DNA for "barcoding" identification
    • Rubinoff D, Cameron S, Will K, (2006) A genomic perspective on the shortcomings of mitochondrial DNA for "barcoding" identification. J Hered 97: 581-594.
    • (2006) J Hered , vol.97 , pp. 581-594
    • Rubinoff, D.1    Cameron, S.2    Will, K.3
  • 21
  • 22
    • 2442637641 scopus 로고    scopus 로고
    • NUMTs in sequenced eukaryotic genomes
    • Richly E, Leister D, (2004) NUMTs in sequenced eukaryotic genomes. Mol Biol Evol 21: 1081-1084.
    • (2004) Mol Biol Evol , vol.21 , pp. 1081-1084
    • Richly, E.1    Leister, D.2
  • 24
    • 33645689896 scopus 로고    scopus 로고
    • Noninvasive genetic sampling tools for wildlife biologists: a review of applications and recommendations for accurate data collection
    • Waits LP, Paetkau D, (2005) Noninvasive genetic sampling tools for wildlife biologists: a review of applications and recommendations for accurate data collection. J Wildl Manage 69: 1419-1433.
    • (2005) J Wildl Manage , vol.69 , pp. 1419-1433
    • Waits, L.P.1    Paetkau, D.2
  • 25
    • 79954587407 scopus 로고    scopus 로고
    • Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos
    • Hajibabaei M, Shokralla S, Zhou X, Singer GA, Baird DJ, (2011) Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. PLoS ONE 6: e17497.
    • (2011) PLoS ONE , vol.6
    • Hajibabaei, M.1    Shokralla, S.2    Zhou, X.3    Singer, G.A.4    Baird, D.J.5
  • 26
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
    • Metzker ML, (2010) Sequencing technologies- the next generation. Nat Rev Genet 11: 31-46.
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 27
    • 34447337206 scopus 로고    scopus 로고
    • Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring
    • Hajibabaei M, Singer GA, Clare EL, Hebert PD, (2007) Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring. BMC Biol 5: 24.
    • (2007) BMC Biol , vol.5 , pp. 24
    • Hajibabaei, M.1    Singer, G.A.2    Clare, E.L.3    Hebert, P.D.4
  • 29
    • 0031239603 scopus 로고    scopus 로고
    • Noninvasive genetic tracking of the endangered Pyrenean brown bear population
    • Taberlet P, Camarra JJ, Griffin S, Uhres E, Hanotte O, et al. (1997) Noninvasive genetic tracking of the endangered Pyrenean brown bear population. Mol Ecol 6: 869-876.
    • (1997) Mol Ecol , vol.6 , pp. 869-876
    • Taberlet, P.1    Camarra, J.J.2    Griffin, S.3    Uhres, E.4    Hanotte, O.5
  • 30
    • 0034503404 scopus 로고    scopus 로고
    • Quantitative evaluation of fecal drying methods for brown bear DNA analysis
    • Murphy MA, Waits LP, Kendall KC, (2000) Quantitative evaluation of fecal drying methods for brown bear DNA analysis. Wildl Soc Bull pp. 951-957.
    • (2000) Wildl Soc Bull , pp. 951-957
    • Murphy, M.A.1    Waits, L.P.2    Kendall, K.C.3
  • 31
    • 77951973196 scopus 로고    scopus 로고
    • A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies
    • Galan M, Guivier E, Caraux G, Charbonnel N, Cosson JF, (2010) A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies. BMC Genomics 11: 296.
    • (2010) BMC Genomics , vol.11 , pp. 296
    • Galan, M.1    Guivier, E.2    Caraux, G.3    Charbonnel, N.4    Cosson, J.F.5
  • 32
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5
  • 33
    • 30344481292 scopus 로고    scopus 로고
    • Superfamily Muroidea
    • 3rd edition. Edited by: Wilson DE, Reeder DM. Baltimore, Johns Hopkins University
    • Musser G, Carleton M (2005) Superfamily Muroidea. In Mammal species of the world. A taxonomic and geographic reference Volume 2. 3rd edition. Edited by: Wilson DE, Reeder DM. Baltimore, Johns Hopkins University. 894-1531.
    • (2005) Mammal species of the world. A taxonomic and geographic reference , vol.2 , pp. 894-1531
    • Musser, G.1    Carleton, M.2
  • 34
    • 18144424074 scopus 로고    scopus 로고
    • Molecular identification of four cryptic species of Mastomys (Rodentia, Murinae)
    • Lecompte E, Brouat C, Duplantier JM, Galan M, Granjon L, et al. (2005) Molecular identification of four cryptic species of Mastomys (Rodentia, Murinae). Biochem Syst Ecol 33: 681-689.
    • (2005) Biochem Syst Ecol , vol.33 , pp. 681-689
    • Lecompte, E.1    Brouat, C.2    Duplantier, J.M.3    Galan, M.4    Granjon, L.5
  • 35
    • 77952806983 scopus 로고    scopus 로고
    • Are there two cryptic species of the lesser jerboa Jaculus jaculus (Rodentia: Dipodidae) in Tunisia? Evidence from molecular, morphometric, and cytogenetic data
    • Ben Faleh A, Cosson J, Tatard C, Ben Othmen A, Said K, et al. (2010) Are there two cryptic species of the lesser jerboa Jaculus jaculus (Rodentia: Dipodidae) in Tunisia? Evidence from molecular, morphometric, and cytogenetic data. Biol J Linn Soc Lond 99: 673-686.
    • (2010) Biol J Linn Soc Lond , vol.99 , pp. 673-686
    • Ben Faleh, A.1    Cosson, J.2    Tatard, C.3    Ben Othmen, A.4    Said, K.5
  • 36
    • 85008770660 scopus 로고    scopus 로고
    • Morphological and molecular investigations of a new family, genus and species of rodent (Mammalia: Rodentia: Hystricognatha) from Lao PDR
    • Jenkins PD, Kilpatrick W, Robinson M, Timmins R, (2004) Morphological and molecular investigations of a new family, genus and species of rodent (Mammalia: Rodentia: Hystricognatha) from Lao PDR. System Biodivers 2: 419-454.
    • (2004) System Biodivers , vol.2 , pp. 419-454
    • Jenkins, P.D.1    Kilpatrick, W.2    Robinson, M.3    Timmins, R.4
  • 37
    • 33748476689 scopus 로고    scopus 로고
    • Description of a new genus and species of rodent (Murinae, Muridae, Rodentia) from the Khammouan limestone national biodiversity conservation area in Lao PDR
    • Musser G, Smith A, Robinson MF, Lunde D, (2005) Description of a new genus and species of rodent (Murinae, Muridae, Rodentia) from the Khammouan limestone national biodiversity conservation area in Lao PDR. American Museum novitates 3497: 1-31.
    • (2005) American Museum Novitates , vol.3497 , pp. 1-31
    • Musser, G.1    Smith, A.2    Robinson, M.F.3    Lunde, D.4
  • 38
    • 20444465752 scopus 로고    scopus 로고
    • A new species of murid rodent (genus Mayermys) from South-eastern New Guinea
    • Helgen KM, (2005) A new species of murid rodent (genus Mayermys) from South-eastern New Guinea. Mammalian Biology 70: 61-67.
    • (2005) Mammalian Biology , vol.70 , pp. 61-67
    • Helgen, K.M.1
  • 39
    • 34748817862 scopus 로고    scopus 로고
    • Description of a new genus and species of rodent (Murinae, Muridae, Rodentia) from the lower karst region of Northeastern Vietnam
    • Musser G, Lunde D, Truong Son N, (2006) Description of a new genus and species of rodent (Murinae, Muridae, Rodentia) from the lower karst region of Northeastern Vietnam. American Museum novitates 3571: 1-41.
    • (2006) American Museum Novitates , vol.3571 , pp. 1-41
    • Musser, G.1    Lunde, D.2    Truong Son, N.3
  • 41
    • 77953629995 scopus 로고    scopus 로고
    • Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries
    • Pagès M, Chaval Y, Herbreteau V, Waengsothorn S, Cosson JF, et al. (2010) Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries. BMC Evol Biol 10: 184.
    • (2010) BMC Evol Biol , vol.10 , pp. 184
    • Pagès, M.1    Chaval, Y.2    Herbreteau, V.3    Waengsothorn, S.4    Cosson, J.F.5
  • 42
    • 78651447245 scopus 로고    scopus 로고
    • SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing
    • Meglecz E, Piry S, Desmarais E, Galan M, Gilles A, et al. (2011) SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing. Bioinformatics 27: 277-278.
    • (2011) Bioinformatics , vol.27 , pp. 277-278
    • Meglecz, E.1    Piry, S.2    Desmarais, E.3    Galan, M.4    Gilles, A.5
  • 43
    • 79956044149 scopus 로고    scopus 로고
    • Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing
    • Gilles A, Meglecz E, Pech N, Ferreira S, Malausa T, et al. (2011) Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing. BMC Genomics 12: 245.
    • (2011) BMC Genomics , vol.12 , pp. 245
    • Gilles, A.1    Meglecz, E.2    Pech, N.3    Ferreira, S.4    Malausa, T.5
  • 44
    • 27744531732 scopus 로고    scopus 로고
    • Confrontation of morphological and molecular data: the Praomys group (Rodentia, Murinae) as a case of adaptive convergences and morphological stasis
    • Lecompte E, Denys C, Granjon L, (2005) Confrontation of morphological and molecular data: the Praomys group (Rodentia, Murinae) as a case of adaptive convergences and morphological stasis. Mol Phylogenet Evol 37: 899-919.
    • (2005) Mol Phylogenet Evol , vol.37 , pp. 899-919
    • Lecompte, E.1    Denys, C.2    Granjon, L.3
  • 45
    • 7544222946 scopus 로고    scopus 로고
    • Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences
    • Jaarola M, Martinkova N, Gunduz I, Brunhoff C, Zima J, et al. (2004) Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences. Mol Phylogenet Evol 33: 647-663.
    • (2004) Mol Phylogenet Evol , vol.33 , pp. 647-663
    • Jaarola, M.1    Martinkova, N.2    Gunduz, I.3    Brunhoff, C.4    Zima, J.5
  • 46
    • 80355129314 scopus 로고    scopus 로고
    • Multiple geographic origins of commensalism and complex dispersal history of black rats
    • Aplin K, Suzuki H, Chinen AA, Chesser T, ten Have J, et al. (2011) Multiple geographic origins of commensalism and complex dispersal history of black rats. PLoS ONE 6: e26357.
    • (2011) PLoS ONE , vol.6
    • Aplin, K.1    Suzuki, H.2    Chinen, A.A.3    Chesser, T.4    ten Have, J.5
  • 47
    • 83955162205 scopus 로고    scopus 로고
    • Evolutionary systematics and biogeography of endemic gerbils (Rodentia, Muridae) from Morocco: an integrative approach
    • Ndiaye A, Bâ K, Aniskin VM, Benazzou T, Chevret P, et al. (2011) Evolutionary systematics and biogeography of endemic gerbils (Rodentia, Muridae) from Morocco: an integrative approach. Zool Scr 41: 11-28.
    • (2011) Zool Scr , vol.41 , pp. 11-28
    • Ndiaye, A.1    Bâ, K.2    Aniskin, V.M.3    Benazzou, T.4    Chevret, P.5
  • 48
    • 69449098823 scopus 로고    scopus 로고
    • Phylogeography of spiny mice (genus Acomys, Rodentia: Muridae) from the south-western margin of the Sahara with taxonomic implications
    • Nicolas V, Granjon L, Duplantier JM, Cruaud C, Dobigny G, (2009) Phylogeography of spiny mice (genus Acomys, Rodentia: Muridae) from the south-western margin of the Sahara with taxonomic implications. Biol J Linn Soc Lond 98: 26-46.
    • (2009) Biol J Linn Soc Lond , vol.98 , pp. 26-46
    • Nicolas, V.1    Granjon, L.2    Duplantier, J.M.3    Cruaud, C.4    Dobigny, G.5
  • 49
    • 0037667870 scopus 로고    scopus 로고
    • Phylogeography of the common vole (Microtus arvalis) with particular emphasis on the colonization of the Orkney archipelago
    • Haynes S, Jaarola M, Searle JB, (2003) Phylogeography of the common vole (Microtus arvalis) with particular emphasis on the colonization of the Orkney archipelago. Mol Ecol 12: 951-956.
    • (2003) Mol Ecol , vol.12 , pp. 951-956
    • Haynes, S.1    Jaarola, M.2    Searle, J.B.3
  • 50
    • 0033005039 scopus 로고    scopus 로고
    • A translocated mitochondrial cytochrome b pseudogene in voles (Rodentia: Microtus)
    • DeWoody JA, Chesser RK, Baker RJ, (1999) A translocated mitochondrial cytochrome b pseudogene in voles (Rodentia: Microtus). J Mol Evol 48: 380-382.
    • (1999) J Mol Evol , vol.48 , pp. 380-382
    • DeWoody, J.A.1    Chesser, R.K.2    Baker, R.J.3
  • 51
    • 36448952310 scopus 로고    scopus 로고
    • Molecular analyses of mitochondrial pseudogenes within the nuclear genome of arvicoline rodents
    • Triant DA, DeWoody JA, (2008) Molecular analyses of mitochondrial pseudogenes within the nuclear genome of arvicoline rodents. Genetica 132: 21-33.
    • (2008) Genetica , vol.132 , pp. 21-33
    • Triant, D.A.1    DeWoody, J.A.2
  • 52
    • 67649969585 scopus 로고    scopus 로고
    • Demography and phylogenetic utility of Numt pseudogenes in the Southern red-backed vole (Myodes gapperi)
    • Triant DA, DeWoody JA, (2009) Demography and phylogenetic utility of Numt pseudogenes in the Southern red-backed vole (Myodes gapperi). J Mammal 90: 561-570.
    • (2009) J Mammal , vol.90 , pp. 561-570
    • Triant, D.A.1    DeWoody, J.A.2
  • 53
    • 84857398207 scopus 로고    scopus 로고
    • Ancient DNA analysis reveals unsuspected phylogenetic affinities between mice and the extinct Malpaisomys insularis (Rodentia, Murinae), an endemic to the Canary Islands
    • accepted
    • Pagès M, Chevret P, Gros-Balthazard M, Hughes S, Alcover JA, et al. (accepted) Ancient DNA analysis reveals unsuspected phylogenetic affinities between mice and the extinct Malpaisomys insularis (Rodentia, Murinae), an endemic to the Canary Islands. PLoS ONE 7: e31123.
    • PLoS ONE , vol.7
    • Pagès, M.1    Chevret, P.2    Gros-Balthazard, M.3    Hughes, S.4    Alcover, J.A.5
  • 54
    • 84856254445 scopus 로고    scopus 로고
    • Numts help to reconstruct the demographic history of the ocellated lizard (Lacerta lepida) in a secondary contact zone
    • Miraldo A, Hewitt GM, Dear PH, Paulo OS, Emerson BC, (2012) Numts help to reconstruct the demographic history of the ocellated lizard (Lacerta lepida) in a secondary contact zone. Mol Ecol 21: 1005-1018.
    • (2012) Mol Ecol , vol.21 , pp. 1005-1018
    • Miraldo, A.1    Hewitt, G.M.2    Dear, P.H.3    Paulo, O.S.4    Emerson, B.C.5
  • 56
    • 0035983971 scopus 로고    scopus 로고
    • Phylogeny of the genus Apodemus with a special emphasis on the subgenus Sylvaemus using the nuclear IRBP gene and two mitochondrial markers: cytochrome b and 12S rRNA
    • Michaux JR, Chevret P, Filippucci MG, Macholan M, (2002) Phylogeny of the genus Apodemus with a special emphasis on the subgenus Sylvaemus using the nuclear IRBP gene and two mitochondrial markers: cytochrome b and 12S rRNA. Mol Phylogenet Evol 23: 123-136.
    • (2002) Mol Phylogenet Evol , vol.23 , pp. 123-136
    • Michaux, J.R.1    Chevret, P.2    Filippucci, M.G.3    Macholan, M.4
  • 57
    • 33750209405 scopus 로고    scopus 로고
    • The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies
    • Galewski T, Tilak MK, Sanchez S, Chevret P, Paradis E, et al. (2006) The evolutionary radiation of Arvicolinae rodents (voles and lemmings): relative contribution of nuclear and mitochondrial DNA phylogenies. BMC Evol Biol 6: 80.
    • (2006) BMC Evol Biol , vol.6 , pp. 80
    • Galewski, T.1    Tilak, M.K.2    Sanchez, S.3    Chevret, P.4    Paradis, E.5
  • 59
    • 55049136427 scopus 로고    scopus 로고
    • Dating of divergences within the Rattus genus phylogeny using whole mitochondrial genomes
    • Robins JH, McLenachan PA, Phillips MJ, Craig L, Ross HA, et al. (2008) Dating of divergences within the Rattus genus phylogeny using whole mitochondrial genomes. Mol Phylogenet Evol 49: 460-466.
    • (2008) Mol Phylogenet Evol , vol.49 , pp. 460-466
    • Robins, J.H.1    McLenachan, P.A.2    Phillips, M.J.3    Craig, L.4    Ross, H.A.5
  • 60
    • 79951564153 scopus 로고    scopus 로고
    • Recent and rapid speciation with limited morphological disparity in the genus Rattus
    • Rowe KC, Aplin KP, Baverstock PR, Moritz C, (2011) Recent and rapid speciation with limited morphological disparity in the genus Rattus. Syst Biol 60: 188-203.
    • (2011) Syst Biol , vol.60 , pp. 188-203
    • Rowe, K.C.1    Aplin, K.P.2    Baverstock, P.R.3    Moritz, C.4
  • 61
    • 41049091151 scopus 로고    scopus 로고
    • Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): Multilocus systematics of the old endemic rodents (Muroidea: Murinae)
    • Rowe KC, Reno ML, Richmond DM, Adkins RM, Steppan SJ, (2008) Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): Multilocus systematics of the old endemic rodents (Muroidea: Murinae). Mol Phylogenet Evol 47: 84-101.
    • (2008) Mol Phylogenet Evol , vol.47 , pp. 84-101
    • Rowe, K.C.1    Reno, M.L.2    Richmond, D.M.3    Adkins, R.M.4    Steppan, S.J.5
  • 62
    • 80855143581 scopus 로고    scopus 로고
    • Evidence of complex phylogeographic structure for the threatened rodent Leopoldamys neilli, in Southeast Asia
    • Latinne A, Waengsothorn S, Herbreteau V, Michaux J, (2011) Evidence of complex phylogeographic structure for the threatened rodent Leopoldamys neilli, in Southeast Asia. Conserv Genet 12: 1495-1511.
    • (2011) Conserv Genet , vol.12 , pp. 1495-1511
    • Latinne, A.1    Waengsothorn, S.2    Herbreteau, V.3    Michaux, J.4
  • 63
    • 56849102170 scopus 로고    scopus 로고
    • An update on the taxonomy and geographic distribution of the cryptic species Mastomys kollmannspergeri (Muridae, Murinae) using combined cytogenetic and molecular data
    • Dobigny G, Lecompte E, Tatard C, Gauthier P, Bâ K, et al. (2008) An update on the taxonomy and geographic distribution of the cryptic species Mastomys kollmannspergeri (Muridae, Murinae) using combined cytogenetic and molecular data. J Zool 276: 368-374.
    • (2008) J Zool , vol.276 , pp. 368-374
    • Dobigny, G.1    Lecompte, E.2    Tatard, C.3    Gauthier, P.4    Bâ, K.5
  • 64
    • 48349086614 scopus 로고    scopus 로고
    • Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily
    • Lecompte E, Aplin K, Denys C, Catzeflis F, Chades M, et al. (2008) Phylogeny and biogeography of African Murinae based on mitochondrial and nuclear gene sequences, with a new tribal classification of the subfamily. BMC Evol Biol 8: 199.
    • (2008) BMC Evol Biol , vol.8 , pp. 199
    • Lecompte, E.1    Aplin, K.2    Denys, C.3    Catzeflis, F.4    Chades, M.5
  • 65
    • 33847690236 scopus 로고    scopus 로고
    • Evolutionary systematics in African gerbilline rodents of the genus Gerbilliscus: inference from mitochondrial genes
    • Colangelo P, Granjon L, Taylor PJ, Corti M, (2007) Evolutionary systematics in African gerbilline rodents of the genus Gerbilliscus: inference from mitochondrial genes. Mol Phylogenet Evol 42: 797-806.
    • (2007) Mol Phylogenet Evol , vol.42 , pp. 797-806
    • Colangelo, P.1    Granjon, L.2    Taylor, P.J.3    Corti, M.4
  • 66
    • 0032132836 scopus 로고    scopus 로고
    • A molecular perspective on the systematics and evolution of the genus Arvicanthis (Rodentia, Muridae): inferences from complete cytochrome b gene sequences
    • Ducroz JF, Volobouev V, Granjon L, (1998) A molecular perspective on the systematics and evolution of the genus Arvicanthis (Rodentia, Muridae): inferences from complete cytochrome b gene sequences. Mol Phylogenet Evol 10: 104-117.
    • (1998) Mol Phylogenet Evol , vol.10 , pp. 104-117
    • Ducroz, J.F.1    Volobouev, V.2    Granjon, L.3
  • 67
    • 18144400436 scopus 로고    scopus 로고
    • Systematics and evolution of the subfamily Gerbillinae (Mammalia, Rodentia, Muridae)
    • Chevret P, Dobigny G, (2005) Systematics and evolution of the subfamily Gerbillinae (Mammalia, Rodentia, Muridae). Mol Phylogenet Evol 35: 674-688.
    • (2005) Mol Phylogenet Evol , vol.35 , pp. 674-688
    • Chevret, P.1    Dobigny, G.2
  • 68
    • 0033178320 scopus 로고    scopus 로고
    • Noninvasive genetic sampling: look before you leap
    • Taberlet P, Waits LP, Luikart G, (1999) Noninvasive genetic sampling: look before you leap. Trends Ecol Evol 14: 323-327.
    • (1999) Trends Ecol Evol , vol.14 , pp. 323-327
    • Taberlet, P.1    Waits, L.P.2    Luikart, G.3
  • 69
    • 0031285080 scopus 로고    scopus 로고
    • Facts from feces revisited
    • Köhn W, Wayne RK, (1997) Facts from feces revisited. Trends Ecol Evol 12: 223-227.
    • (1997) Trends Ecol Evol , vol.12 , pp. 223-227
    • Köhn, W.1    Wayne, R.K.2
  • 71
    • 0035581087 scopus 로고    scopus 로고
    • DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
    • Hofreiter M, Jaenicke V, Serre D, Haeseler Av A, Paabo S, (2001) DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res 29: 4793-4799.
    • (2001) Nucleic Acids Res , vol.29 , pp. 4793-4799
    • Hofreiter, M.1    Jaenicke, V.2    Serre, D.3    Haeseler, A.A.4    Paabo, S.5
  • 74
    • 84859617279 scopus 로고    scopus 로고
    • Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan
    • Shehzad W, Riaz T, Nawaz MA, Miquel C, Poillot C, et al. (2012) Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan. Mol Ecol 21: 1951-1965.
    • (2012) Mol Ecol , vol.21 , pp. 1951-1965
    • Shehzad, W.1    Riaz, T.2    Nawaz, M.A.3    Miquel, C.4    Poillot, C.5
  • 75
    • 0036127961 scopus 로고    scopus 로고
    • The small mammal community of a coastal site of south-west Mauritania
    • Granjon L, Bruderer C, Cosson JF, Dia AT, Colas F, (2002) The small mammal community of a coastal site of south-west Mauritania. Afri J Ecol 40: 10-17.
    • (2002) Afri J Ecol , vol.40 , pp. 10-17
    • Granjon, L.1    Bruderer, C.2    Cosson, J.F.3    Dia, A.T.4    Colas, F.5
  • 76
    • 58449084391 scopus 로고    scopus 로고
    • Impacts of climatic changes on small mammal communities in the Sahel (West Africa) as evidenced by owl pellet analysis
    • Thiam M, Bâ K, Duplantier JM, (2008) Impacts of climatic changes on small mammal communities in the Sahel (West Africa) as evidenced by owl pellet analysis. Afr Zool 43: 135-143.
    • (2008) Afr Zool , vol.43 , pp. 135-143
    • Thiam, M.1    Bâ, K.2    Duplantier, J.M.3
  • 77
    • 79959397022 scopus 로고    scopus 로고
    • Molecular diet analysis of two african free-tailed bats (Molossidae) using high throughput sequencing
    • Bohmann K, Monadjem A, Lehmkuhl Noer C, Rasmussen M, Zeale MR, et al. (2011) Molecular diet analysis of two african free-tailed bats (Molossidae) using high throughput sequencing. PLoS ONE 6: e21441.
    • (2011) PLoS ONE , vol.6
    • Bohmann, K.1    Monadjem, A.2    Lehmkuhl Noer, C.3    Rasmussen, M.4    Zeale, M.R.5
  • 78
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 79
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
    • Tamura K, Petersen D, Petersen N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Petersen, D.2    Petersen, N.3    Stecher, G.4    Nei, M.5
  • 84
    • 84867557040 scopus 로고    scopus 로고
    • {pipe}SE{pipe}S{pipe}AM{pipe}E{pipe} Barcode: a NGS-oriented software for amplicon characterization - application to species and environmental barcoding
    • doi:10.1111/j.1755-0998.2012.03171.x
    • Piry S, Guivier E, Realini A, Martin JF, (2012) {pipe}SE{pipe}S{pipe}AM{pipe}E{pipe} Barcode: a NGS-oriented software for amplicon characterization - application to species and environmental barcoding. Mol Ecol Resour 12doi:10.1111/j.1755-0998.2012.03171.x.
    • (2012) Mol Ecol Resour , vol.12
    • Piry, S.1    Guivier, E.2    Realini, A.3    Martin, J.F.4
  • 85
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 86
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave C, Preparata G, Saccone C, Serio G, (1984) A new method for calculating evolutionary substitution rates. J Mol Evol 20: 86-93.
    • (1984) J Mol Evol , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 87
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods
    • Yang Z, (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39: 306-14.
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.1
  • 88
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML Web servers
    • Stamatakis A, Hoover P, Rougemont J, (2008) A rapid bootstrap algorithm for the RAxML Web servers. Syst Biol 57: 758-771.
    • (2008) Syst Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 89
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-20.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1


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