-
1
-
-
0026459611
-
Pathogenesis of Providencia alcalifaciens-induced diarrhea
-
258271, 1452332
-
Albert MJ, Alam K, Ansaruzzaman M, Islam MM, Rahman AS, Haider K, Bhuiyan NA, Nahar S, Ryan N, Montanaro J. Pathogenesis of Providencia alcalifaciens-induced diarrhea. Infect Immun 1992, 60:5017-5024. 258271, 1452332.
-
(1992)
Infect Immun
, vol.60
, pp. 5017-5024
-
-
Albert, M.J.1
Alam, K.2
Ansaruzzaman, M.3
Islam, M.M.4
Rahman, A.S.5
Haider, K.6
Bhuiyan, N.A.7
Nahar, S.8
Ryan, N.9
Montanaro, J.10
-
2
-
-
0035168383
-
Molecular analysis of clinical isolates of Providencia alcalifaciens
-
Sobreira M, Leal NC, Magalhães M, Guth BE, Almeida AM. Molecular analysis of clinical isolates of Providencia alcalifaciens. J Med Microbiol 2001, 50:29-34.
-
(2001)
J Med Microbiol
, vol.50
, pp. 29-34
-
-
Sobreira, M.1
Leal, N.C.2
Magalhães, M.3
Guth, B.E.4
Almeida, A.M.5
-
3
-
-
27644461019
-
Importance of Providencia species as a major cause of travellers' diarrhoea
-
10.1099/jmm.0.45846-0, 16192440
-
Yoh M, Matsuyama J, Ohnishi M, Takagi K, Miyagi H, Mori K, Park K-S, Ono T, Honda T. Importance of Providencia species as a major cause of travellers' diarrhoea. J Med Microbiol 2005, 54:1077-1082. 10.1099/jmm.0.45846-0, 16192440.
-
(2005)
J Med Microbiol
, vol.54
, pp. 1077-1082
-
-
Yoh, M.1
Matsuyama, J.2
Ohnishi, M.3
Takagi, K.4
Miyagi, H.5
Mori, K.6
Park, K.-S.7
Ono, T.8
Honda, T.9
-
4
-
-
78650073149
-
Meningitis due to Providencia stuartii
-
10.1128/JCM.01349-10, 3008472, 20980575
-
Sipahi OR, Bardak-Ozcem S, Ozgiray E, Aydemir S, Yurtseven T, Yamazhan T, Tasbakan M, Ulusoy S. Meningitis due to Providencia stuartii. J Clin Microbiol 2010, 48:4667-4668. 10.1128/JCM.01349-10, 3008472, 20980575.
-
(2010)
J Clin Microbiol
, vol.48
, pp. 4667-4668
-
-
Sipahi, O.R.1
Bardak-Ozcem, S.2
Ozgiray, E.3
Aydemir, S.4
Yurtseven, T.5
Yamazhan, T.6
Tasbakan, M.7
Ulusoy, S.8
-
5
-
-
70449713952
-
The NIH human microbiome project
-
2792171, 19819907
-
Peterson J, Garges S, Giovanni M, McInnes P, Wang L, Schloss JA, Bonazzi V, McEwen JE, Wetterstrand KA, Deal C, Baker CC, Di Francesco V, Howcroft TK, Karp RW, Lunsford RD, Wellington CR, Belachew T, Wright M, Giblin C, David H, Mills M, Salomon R, Mullins C, Akolkar B, Begg L, Davis C, Grandison L, Humble M, Khalsa J, Little AR, et al. The NIH human microbiome project. Genome Res 2009, 19:2317-2323. 2792171, 19819907.
-
(2009)
Genome Res
, vol.19
, pp. 2317-2323
-
-
Peterson, J.1
Garges, S.2
Giovanni, M.3
McInnes, P.4
Wang, L.5
Schloss, J.A.6
Bonazzi, V.7
McEwen, J.E.8
Wetterstrand, K.A.9
Deal, C.10
Baker, C.C.11
Di Francesco, V.12
Howcroft, T.K.13
Karp, R.W.14
Lunsford, R.D.15
Wellington, C.R.16
Belachew, T.17
Wright, M.18
Giblin, C.19
David, H.20
Mills, M.21
Salomon, R.22
Mullins, C.23
Akolkar, B.24
Begg, L.25
Davis, C.26
Grandison, L.27
Humble, M.28
Khalsa, J.29
Little, A.R.30
more..
-
6
-
-
0007644541
-
Providencia friedericiana, a new species isolated from penguins
-
Muller HE. Providencia friedericiana, a new species isolated from penguins. Int J Syst Bacteriol 1983, 33:709-715.
-
(1983)
Int J Syst Bacteriol
, vol.33
, pp. 709-715
-
-
Muller, H.E.1
-
7
-
-
68949180327
-
Antibiotic resistance of gram negatives isolates from loggerhead sea turtles (Caretta caretta) in the Central Mediterranean Sea
-
10.1016/j.marpolbul.2009.04.020, 19473669
-
Foti M, Giacopello C, Bottari T, Fisichella V, Rinaldo D, Mammina C. Antibiotic resistance of gram negatives isolates from loggerhead sea turtles (Caretta caretta) in the Central Mediterranean Sea. Mar Pollut Bull 2009, 58:1363-1366. 10.1016/j.marpolbul.2009.04.020, 19473669.
-
(2009)
Mar Pollut Bull
, vol.58
, pp. 1363-1366
-
-
Foti, M.1
Giacopello, C.2
Bottari, T.3
Fisichella, V.4
Rinaldo, D.5
Mammina, C.6
-
8
-
-
77955293564
-
Recovery and screening for antibiotic susceptibility of potential bacterial pathogens from the oral cavity of shark species involved in attacks on humans in Recife, Brazil
-
10.1099/jmm.0.020453-0, 20413619
-
Interaminense JA, Nascimento DCO, Ventura RF, Batista JEC, Souza MMC, Hazin FHV, Pontes-Filho NT, Lima-Filho JV. Recovery and screening for antibiotic susceptibility of potential bacterial pathogens from the oral cavity of shark species involved in attacks on humans in Recife, Brazil. J Med Microbiol 2010, 59:941-947. 10.1099/jmm.0.020453-0, 20413619.
-
(2010)
J Med Microbiol
, vol.59
, pp. 941-947
-
-
Interaminense, J.A.1
Nascimento, D.C.O.2
Ventura, R.F.3
Batista, J.E.C.4
Souza, M.M.C.5
Hazin, F.H.V.6
Pontes-Filho, N.T.7
Lima-Filho, J.V.8
-
9
-
-
0028916319
-
Isolation of insect pathogenic bacteria, Providencia rettgeri, from Heterorhabditis spp
-
Jackson TJ, Wang H, Nugent MJ, Griffin CT, Burnell AM, Dowds BCA. Isolation of insect pathogenic bacteria, Providencia rettgeri, from Heterorhabditis spp. J Appl Bacteriol 1995, 78:237.
-
(1995)
J Appl Bacteriol
, vol.78
, pp. 237
-
-
Jackson, T.J.1
Wang, H.2
Nugent, M.J.3
Griffin, C.T.4
Burnell, A.M.5
Dowds, B.C.A.6
-
10
-
-
84872305780
-
Identification of bacteria from the oral cavity and cloaca of snakes imported from Vietnam
-
10.5625/lar.2011.27.3.213, 3188728, 21998610
-
Jho Y-S, Park D-H, Lee J-H, Cha S-Y, Han JS. Identification of bacteria from the oral cavity and cloaca of snakes imported from Vietnam. Lab Anim Res 2011, 27:213-217. 10.5625/lar.2011.27.3.213, 3188728, 21998610.
-
(2011)
Lab Anim Res
, vol.27
, pp. 213-217
-
-
Jho, Y.-S.1
Park, D.-H.2
Lee, J.-H.3
Cha, S.-Y.4
Han, J.S.5
-
11
-
-
33845260947
-
Evaluation of significance of bacteria in larval development of Cochliomyia macellaria (Diptera: Calliphoridae)
-
10.1603/0022-2585(2006)43[1129:EOSOBI]2.0.CO;2, 17162944
-
Ahmad A, Broce A, Zurek L. Evaluation of significance of bacteria in larval development of Cochliomyia macellaria (Diptera: Calliphoridae). J Med Entomol 2006, 43:1129-1133. 10.1603/0022-2585(2006)43[1129:EOSOBI]2.0.CO;2, 17162944.
-
(2006)
J Med Entomol
, vol.43
, pp. 1129-1133
-
-
Ahmad, A.1
Broce, A.2
Zurek, L.3
-
12
-
-
33644907999
-
Isolation of Enterobacter sakazakii from stable flies, Stomoxys calcitrans L. (Diptera: Muscidae)
-
Mramba F, Broce A, Zurek L. Isolation of Enterobacter sakazakii from stable flies, Stomoxys calcitrans L. (Diptera: Muscidae). J Food Prot 2006, 69:671-673.
-
(2006)
J Food Prot
, vol.69
, pp. 671-673
-
-
Mramba, F.1
Broce, A.2
Zurek, L.3
-
13
-
-
0035101924
-
Isolation and identification of bacteria associated with adult laboratory Mexican fruit flies, Anastrepha Ludens (Diptera: Tephritidae)
-
Kuzina LV, Peloquin JJ, Vacek DC, Miller TA. Isolation and identification of bacteria associated with adult laboratory Mexican fruit flies, Anastrepha Ludens (Diptera: Tephritidae). Curr Microbiol 2001, 42:290-294.
-
(2001)
Curr Microbiol
, vol.42
, pp. 290-294
-
-
Kuzina, L.V.1
Peloquin, J.J.2
Vacek, D.C.3
Miller, T.A.4
-
14
-
-
84856065835
-
Phylogenetic characterization of bacteria in the gut of house flies (Musca domestica L.)
-
10.1111/j.1574-6941.2011.01248.x, 22092755
-
Gupta AK, Nayduch D, Verma P, Shah B, Ghate HV, Patole MS, Shouche YS. Phylogenetic characterization of bacteria in the gut of house flies (Musca domestica L.). FEMS Microbiol Ecol 2012, 79:581-593. 10.1111/j.1574-6941.2011.01248.x, 22092755.
-
(2012)
FEMS Microbiol Ecol
, vol.79
, pp. 581-593
-
-
Gupta, A.K.1
Nayduch, D.2
Verma, P.3
Shah, B.4
Ghate, H.V.5
Patole, M.S.6
Shouche, Y.S.7
-
15
-
-
34249897253
-
Geographical distribution and diversity of bacteria associated with natural populations of Drosophila melanogasteri
-
10.1128/AEM.02120-06, 1932700, 17400769
-
Corby-Harris V, Pontaroli AC, Shimkets LJ, Bennetzen JL, Habel KE, Promislow DEL. Geographical distribution and diversity of bacteria associated with natural populations of Drosophila melanogasteri. Appl Environ Microbiol 2007, 73:3470-3479. 10.1128/AEM.02120-06, 1932700, 17400769.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3470-3479
-
-
Corby-Harris, V.1
Pontaroli, A.C.2
Shimkets, L.J.3
Bennetzen, J.L.4
Habel, K.E.5
Promislow, D.E.L.6
-
16
-
-
80053435147
-
Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system
-
10.1371/journal.pgen.1002272, 3178584, 21966276
-
Chandler JA, Lang JM, Bhatnagar S, Eisen JA, Kopp A. Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system. PLoS Genet 2011, 7:e1002272. 10.1371/journal.pgen.1002272, 3178584, 21966276.
-
(2011)
PLoS Genet
, vol.7
-
-
Chandler, J.A.1
Lang, J.M.2
Bhatnagar, S.3
Eisen, J.A.4
Kopp, A.5
-
17
-
-
67649785282
-
Providencia sneebia sp. nov. and Providencia burhodogranariea sp. nov., isolated from wild Drosophila melanogasteri
-
10.1099/ijs.0.000117-0, 19406801
-
Juneja P, Lazzaro BP. Providencia sneebia sp. nov. and Providencia burhodogranariea sp. nov., isolated from wild Drosophila melanogasteri. Int J Syst Evol Microbiol 2009, 59:1108-1111. 10.1099/ijs.0.000117-0, 19406801.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 1108-1111
-
-
Juneja, P.1
Lazzaro, B.P.2
-
18
-
-
79957719634
-
Comparative pathology of bacteria in the genus Providencia to a natural host, Drosophila melanogasteri
-
10.1016/j.micinf.2011.02.005, 3109104, 21354324
-
Galac MR, Lazzaro BP. Comparative pathology of bacteria in the genus Providencia to a natural host, Drosophila melanogasteri. Microbes Infect 2011, 13:673-683. 10.1016/j.micinf.2011.02.005, 3109104, 21354324.
-
(2011)
Microbes Infect
, vol.13
, pp. 673-683
-
-
Galac, M.R.1
Lazzaro, B.P.2
-
19
-
-
53649106195
-
Next-generation DNA sequencing
-
10.1038/nbt1486, 18846087
-
Shendure J, Ji H. Next-generation DNA sequencing. Nat Biotechnol 2008, 26:1135-1145. 10.1038/nbt1486, 18846087.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
20
-
-
77949587649
-
Fast and accurate long-read alignment with burrows-wheeler transform
-
10.1093/bioinformatics/btp698, 2828108, 20080505
-
Li H, Durbin R. Fast and accurate long-read alignment with burrows-wheeler transform. Bioinformatics 2010, 26:589-595. 10.1093/bioinformatics/btp698, 2828108, 20080505.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
21
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
10.1186/gb-2004-5-2-r12, 395750, 14759262
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL. Versatile and open software for comparing large genomes. Genome Biol 2004, 5:R12. 10.1186/gb-2004-5-2-r12, 395750, 14759262.
-
(2004)
Genome Biol
, vol.5
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
22
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 2000, 132:365-386.
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
23
-
-
40549120596
-
The RAST Server: rapid annotations using subsystems technology
-
10.1186/1471-2164-9-75, 2265698, 18261238
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 2008, 9:75. 10.1186/1471-2164-9-75, 2265698, 18261238.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
24
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
10.1093/bioinformatics/bti610, 16081474
-
Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676. 10.1093/bioinformatics/bti610, 16081474.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Götz, S.2
García-Gómez, J.M.3
Terol, J.4
Talón, M.5
Robles, M.6
-
25
-
-
84455173155
-
Description of a 2,683-base-pair plasmid containing qnrD in two Providencia rettgeri isolates
-
10.1128/AAC.00081-11, 3256040, 21986831
-
Guillard T, Cambau E, Neuwirth C, Nenninger T, Mbadi A, Brasme L, Vernet-Garnier V, Bajolet O, de Champs C. Description of a 2,683-base-pair plasmid containing qnrD in two Providencia rettgeri isolates. Antimicrob Agents Chemother 2012, 56:565-568. 10.1128/AAC.00081-11, 3256040, 21986831.
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 565-568
-
-
Guillard, T.1
Cambau, E.2
Neuwirth, C.3
Nenninger, T.4
Mbadi, A.5
Brasme, L.6
Vernet-Garnier, V.7
Bajolet, O.8
de Champs, C.9
-
26
-
-
84863337508
-
Complete sequence of a novel 178-kilobase plasmid carrying blaNDM-1 in a Providencia stuartii strain isolated in Afghanistan
-
10.1128/AAC.05604-11, 3318346, 22290972
-
Mc Gann P, Hang J, Clifford RJ, Yang Y, Kwak YI, Kuschner RA, Lesho EP, Waterman PE. Complete sequence of a novel 178-kilobase plasmid carrying blaNDM-1 in a Providencia stuartii strain isolated in Afghanistan. Antimicrob Agents Chemother 2012, 56:1673-1679. 10.1128/AAC.05604-11, 3318346, 22290972.
-
(2012)
Antimicrob Agents Chemother
, vol.56
, pp. 1673-1679
-
-
Mc Gann, P.1
Hang, J.2
Clifford, R.J.3
Yang, Y.4
Kwak, Y.I.5
Kuschner, R.A.6
Lesho, E.P.7
Waterman, P.E.8
-
27
-
-
42049090775
-
Different pathways to acquiring resistance genes illustrated by the recent evolution of IncW plasmids
-
10.1128/AAC.00982-07, 2292564, 18268088
-
Revilla C, Garcillán-Barcia MP, Fernández-López R, Thomson NR, Sanders M, Cheung M, Thomas CM, de la Cruz F. Different pathways to acquiring resistance genes illustrated by the recent evolution of IncW plasmids. Antimicrob Agents Chemother 2008, 52:1472-1480. 10.1128/AAC.00982-07, 2292564, 18268088.
-
(2008)
Antimicrob Agents Chemother
, vol.52
, pp. 1472-1480
-
-
Revilla, C.1
Garcillán-Barcia, M.P.2
Fernández-López, R.3
Thomson, N.R.4
Sanders, M.5
Cheung, M.6
Thomas, C.M.7
de la Cruz, F.8
-
28
-
-
0141519279
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes
-
10.1101/gr.1224503, 403725, 12952885
-
Li L, Stoeckert CJ, Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 2003, 13:2178-2189. 10.1101/gr.1224503, 403725, 12952885.
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
29
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
10.1093/bioinformatics/btm404, 17846036
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948. 10.1093/bioinformatics/btm404, 17846036.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
30
-
-
33747847779
-
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
-
10.1093/nar/gkl315, 1538804, 16845082
-
Suyama M, Torrents D, Bork P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res 2006, 34:W609-W612. 10.1093/nar/gkl315, 1538804, 16845082.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Suyama, M.1
Torrents, D.2
Bork, P.3
-
31
-
-
77954427522
-
FASconCAT: convenient handling of data matrices
-
10.1016/j.ympev.2010.04.024, 20416383
-
Kück P, Meusemann K. FASconCAT: convenient handling of data matrices. Mol Phylogenet Evol 2010, 56:1115-1118. 10.1016/j.ympev.2010.04.024, 20416383.
-
(2010)
Mol Phylogenet Evol
, vol.56
, pp. 1115-1118
-
-
Kück, P.1
Meusemann, K.2
-
32
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
10.1093/bioinformatics/btl446, 16928733
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690. 10.1093/bioinformatics/btl446, 16928733.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
33
-
-
77956193448
-
ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
-
10.1371/journal.pone.0011147, 2892488, 20593022
-
Darling AE, Mau B, Perna NT. ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 2010, 5:e11147. 10.1371/journal.pone.0011147, 2892488, 20593022.
-
(2010)
PLoS One
, vol.5
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
34
-
-
24044433279
-
ACT: the Artemis comparison tool
-
10.1093/bioinformatics/bti553, 15976072
-
Carver TJ, Rutherford KM, Berriman M, Rajandream M-A, Barrell BG, Parkhill J. ACT: the Artemis comparison tool. Bioinformatics 2005, 21:3422-3423. 10.1093/bioinformatics/bti553, 15976072.
-
(2005)
Bioinformatics
, vol.21
, pp. 3422-3423
-
-
Carver, T.J.1
Rutherford, K.M.2
Berriman, M.3
Rajandream, M.-A.4
Barrell, B.G.5
Parkhill, J.6
-
35
-
-
79953306448
-
Easyfig: a genome comparison visualizer
-
10.1093/bioinformatics/btr039, 3065679, 21278367
-
Sullivan MJ, Petty NK, Beatson SA. Easyfig: a genome comparison visualizer. Bioinformatics 2011, 27:1009-1010. 10.1093/bioinformatics/btr039, 3065679, 21278367.
-
(2011)
Bioinformatics
, vol.27
, pp. 1009-1010
-
-
Sullivan, M.J.1
Petty, N.K.2
Beatson, S.A.3
-
36
-
-
0024356449
-
Statistical tests for detecting gene conversion
-
Sawyer S. Statistical tests for detecting gene conversion. Mol Biol Evol 1989, 6:526-538.
-
(1989)
Mol Biol Evol
, vol.6
, pp. 526-538
-
-
Sawyer, S.1
-
37
-
-
33646167864
-
A simple and robust statistical test for detecting the presence of recombination
-
1456386, 16489234
-
Bruen TC, Philippe H, Bryant D. A simple and robust statistical test for detecting the presence of recombination. Genetics 2006, 172:2665-2681. 1456386, 16489234.
-
(2006)
Genetics
, vol.172
, pp. 2665-2681
-
-
Bruen, T.C.1
Philippe, H.2
Bryant, D.3
-
38
-
-
0042424602
-
Statistical significance for genomewide studies
-
10.1073/pnas.1530509100, 170937, 12883005
-
Storey JD, Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 2003, 100:9440-9445. 10.1073/pnas.1530509100, 170937, 12883005.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
39
-
-
72049088798
-
Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes
-
10.1186/1471-2148-9-264, 2784778, 19912661
-
Soyer Y, Orsi RH, Rodriguez-Rivera LD, Sun Q, Wiedmann M. Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes. BMC Evol Biol 2009, 9:264. 10.1186/1471-2148-9-264, 2784778, 19912661.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 264
-
-
Soyer, Y.1
Orsi, R.H.2
Rodriguez-Rivera, L.D.3
Sun, Q.4
Wiedmann, M.5
-
40
-
-
51349158939
-
Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes
-
10.1186/1471-2148-8-233, 2532693, 18700032
-
Orsi RH, Sun Q, Wiedmann M. Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes. BMC Evol Biol 2008, 8:233. 10.1186/1471-2148-8-233, 2532693, 18700032.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 233
-
-
Orsi, R.H.1
Sun, Q.2
Wiedmann, M.3
-
41
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
10.1093/molbev/msm088, 17483113
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24:1586-1591. 10.1093/molbev/msm088, 17483113.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
42
-
-
0037230001
-
Pervasive adaptive evolution in mammalian fertilization proteins
-
10.1093/oxfordjournals.molbev.a004233, 12519901
-
Swanson WJ, Nielsen R, Yang Q. Pervasive adaptive evolution in mammalian fertilization proteins. Mol Biol Evol 2003, 20:18-20. 10.1093/oxfordjournals.molbev.a004233, 12519901.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 18-20
-
-
Swanson, W.J.1
Nielsen, R.2
Yang, Q.3
-
43
-
-
79959979274
-
PHAST: a fast phage search tool
-
10.1093/nar/gkr485, 3125810, 21672955
-
Zhou Y, Liang Y, Lynch KH, Dennis JJ, Wishart DS. PHAST: a fast phage search tool. Nucleic Acids Res 2011, 39:W347-W352. 10.1093/nar/gkr485, 3125810, 21672955.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Zhou, Y.1
Liang, Y.2
Lynch, K.H.3
Dennis, J.J.4
Wishart, D.S.5
-
44
-
-
67049109154
-
Resistance plasmid families in Enterobacteriaceae
-
10.1128/AAC.01707-08, 2687249, 19307361
-
Carattoli A. Resistance plasmid families in Enterobacteriaceae. Antimicrob Agents Chemother 2009, 53:2227-2238. 10.1128/AAC.01707-08, 2687249, 19307361.
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 2227-2238
-
-
Carattoli, A.1
-
45
-
-
0031811125
-
Replication and control of circular bacterial plasmids
-
98921, 9618448
-
del Solar G, Giraldo R, Ruiz-Echevarría MJ, Espinosa M, Díaz-Orejas R. Replication and control of circular bacterial plasmids. Microbiol Mol Biol Rev 1998, 62:434-464. 98921, 9618448.
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 434-464
-
-
del Solar, G.1
Giraldo, R.2
Ruiz-Echevarría, M.J.3
Espinosa, M.4
Díaz-Orejas, R.5
-
46
-
-
22444435033
-
Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members
-
10.1093/nar/gki702, 1176014, 16027112
-
Iyer LM, Koonin EV, Leipe DD, Aravind L. Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members. Nucleic Acids Res 2005, 33:3875-3896. 10.1093/nar/gki702, 1176014, 16027112.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 3875-3896
-
-
Iyer, L.M.1
Koonin, E.V.2
Leipe, D.D.3
Aravind, L.4
-
47
-
-
77952549113
-
A tale of two pili: assembly and function of pili in bacteria
-
10.1016/j.tim.2010.03.002, 20378353
-
Kline KA, Dodson KW, Caparon MG, Hultgren SJ. A tale of two pili: assembly and function of pili in bacteria. Trends Microbiol 2010, 18:224-232. 10.1016/j.tim.2010.03.002, 20378353.
-
(2010)
Trends Microbiol
, vol.18
, pp. 224-232
-
-
Kline, K.A.1
Dodson, K.W.2
Caparon, M.G.3
Hultgren, S.J.4
-
48
-
-
0016593996
-
Biotypes of Proteus rettgeri
-
274988, 1176597
-
Penner JL, Hinton NA, Hennessy J. Biotypes of Proteus rettgeri. J Clin Microbiol 1975, 1:136-142. 274988, 1176597.
-
(1975)
J Clin Microbiol
, vol.1
, pp. 136-142
-
-
Penner, J.L.1
Hinton, N.A.2
Hennessy, J.3
-
49
-
-
34548488713
-
Protein secretion systems and adhesins: the molecular armory of Gram-negative pathogens
-
Gerlach RG, Hensel M. Protein secretion systems and adhesins: the molecular armory of Gram-negative pathogens. Int J Med Microbi: IJMM 2007, 297:401-415.
-
(2007)
Int J Med Microbi: IJMM
, vol.297
, pp. 401-415
-
-
Gerlach, R.G.1
Hensel, M.2
-
50
-
-
77954143123
-
Impact of recombination on bacterial evolution
-
10.1016/j.tim.2010.04.002, 20452218
-
Didelot X, Maiden MCJ. Impact of recombination on bacterial evolution. Trends Microbiol 2010, 18:315-322. 10.1016/j.tim.2010.04.002, 20452218.
-
(2010)
Trends Microbiol
, vol.18
, pp. 315-322
-
-
Didelot, X.1
Maiden, M.C.J.2
-
51
-
-
0042208362
-
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
-
1462615, 12871927
-
Anisimova M, Nielsen R, Yang Z. Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 2003, 164:1229-1236. 1462615, 12871927.
-
(2003)
Genetics
, vol.164
, pp. 1229-1236
-
-
Anisimova, M.1
Nielsen, R.2
Yang, Z.3
-
52
-
-
34548440667
-
Genes under positive selection in Escherichia coli
-
10.1101/gr.6254707, 1950902, 17675366
-
Petersen L, Bollback JP, Dimmic M, Hubisz M, Nielsen R. Genes under positive selection in Escherichia coli. Genome Res 2007, 17:1336-1343. 10.1101/gr.6254707, 1950902, 17675366.
-
(2007)
Genome Res
, vol.17
, pp. 1336-1343
-
-
Petersen, L.1
Bollback, J.P.2
Dimmic, M.3
Hubisz, M.4
Nielsen, R.5
-
53
-
-
33747154459
-
Multidrug-resistance efflux pumps - not just for resistance
-
10.1038/nrmicro1464, 16845433
-
Piddock LJV. Multidrug-resistance efflux pumps - not just for resistance. Nat Rev Microbiol 2006, 4:629-636. 10.1038/nrmicro1464, 16845433.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 629-636
-
-
Piddock, L.J.V.1
-
54
-
-
8844241421
-
Type I secretion in gram-negative bacteria
-
10.1016/j.bbamcr.2004.05.001, 15546664
-
Delepelaire P. Type I secretion in gram-negative bacteria. Biochim Biophys Acta 2004, 1694:149-161. 10.1016/j.bbamcr.2004.05.001, 15546664.
-
(2004)
Biochim Biophys Acta
, vol.1694
, pp. 149-161
-
-
Delepelaire, P.1
-
55
-
-
33645844248
-
Regulation of flagella
-
10.1016/j.mib.2006.02.001, 16487743
-
McCarter LL. Regulation of flagella. Curr Opin Microbiol 2006, 9:180-186. 10.1016/j.mib.2006.02.001, 16487743.
-
(2006)
Curr Opin Microbiol
, vol.9
, pp. 180-186
-
-
McCarter, L.L.1
-
56
-
-
79958252546
-
Regulation of cell division, biofilm formation, and virulence by FlhC in Escherichia coli O157:H7 grown on meat
-
10.1128/AEM.00069-11, 3127620, 21498760
-
Sule P, Horne SM, Logue CM, Prüss BM. Regulation of cell division, biofilm formation, and virulence by FlhC in Escherichia coli O157:H7 grown on meat. Appl Environ Microbiol 2011, 77:3653-3662. 10.1128/AEM.00069-11, 3127620, 21498760.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 3653-3662
-
-
Sule, P.1
Horne, S.M.2
Logue, C.M.3
Prüss, B.M.4
-
57
-
-
0033989675
-
FlhDC, the flagellar master operon of Xenorhabdus nematophilus: requirement for motility, lipolysis, extracellular hemolysis, and full virulence in insects
-
Givaudan A, Lanois A. FlhDC, the flagellar master operon of Xenorhabdus nematophilus: requirement for motility, lipolysis, extracellular hemolysis, and full virulence in insects. J Bacteriol 2000, 102:107-115.
-
(2000)
J Bacteriol
, vol.102
, pp. 107-115
-
-
Givaudan, A.1
Lanois, A.2
-
58
-
-
70449380104
-
Classification of Myoviridae bacteriophages using protein sequence similarity
-
10.1186/1471-2180-9-224, 2771037, 19857251
-
Lavigne R, Darius P, Summer EJ, Seto D, Mahadevan P, Nilsson AS, Ackermann HW, Kropinski AM. Classification of Myoviridae bacteriophages using protein sequence similarity. BMC Microbiol 2009, 9:224. 10.1186/1471-2180-9-224, 2771037, 19857251.
-
(2009)
BMC Microbiol
, vol.9
, pp. 224
-
-
Lavigne, R.1
Darius, P.2
Summer, E.J.3
Seto, D.4
Mahadevan, P.5
Nilsson, A.S.6
Ackermann, H.W.7
Kropinski, A.M.8
-
59
-
-
33845249292
-
Protein delivery into eukaryotic cells by type III secretion machines
-
10.1038/nature05272, 17136086
-
Galán JE, Wolf-Watz H. Protein delivery into eukaryotic cells by type III secretion machines. Nature 2006, 444:567-573. 10.1038/nature05272, 17136086.
-
(2006)
Nature
, vol.444
, pp. 567-573
-
-
Galán, J.E.1
Wolf-Watz, H.2
-
60
-
-
0036219352
-
Regulation of type III secretion systems
-
10.1016/S1369-5274(02)00301-6, 11934613
-
Francis MS, Wolf-Watz H, Forsberg A. Regulation of type III secretion systems. Curr Opin Microbiol 2002, 5:166-172. 10.1016/S1369-5274(02)00301-6, 11934613.
-
(2002)
Curr Opin Microbiol
, vol.5
, pp. 166-172
-
-
Francis, M.S.1
Wolf-Watz, H.2
Forsberg, A.3
-
62
-
-
36148932613
-
The type III secretion system of Proteus mirabilis HI4320 does not contribute to virulence in the mouse model of ascending urinary tract infection
-
10.1099/jmm.0.47314-0, 17893161
-
Pearson MM, Mobley HLT. The type III secretion system of Proteus mirabilis HI4320 does not contribute to virulence in the mouse model of ascending urinary tract infection. J Med Microbiol 2007, 56:1277-1283. 10.1099/jmm.0.47314-0, 17893161.
-
(2007)
J Med Microbiol
, vol.56
, pp. 1277-1283
-
-
Pearson, M.M.1
Mobley, H.L.T.2
-
63
-
-
0028927540
-
Characteristics of invasion of HEp-2 cells by Providencia alcalifaciens
-
10.1099/00222615-42-3-186, 7884799
-
Albert MJ, Ansaruzzaman M, Bhuiyan NA, Neogi PKB, Faruque ASG. Characteristics of invasion of HEp-2 cells by Providencia alcalifaciens. J Med Microbiol 1995, 42:186-190. 10.1099/00222615-42-3-186, 7884799.
-
(1995)
J Med Microbiol
, vol.42
, pp. 186-190
-
-
Albert, M.J.1
Ansaruzzaman, M.2
Bhuiyan, N.A.3
Neogi, P.K.B.4
Faruque, A.S.G.5
-
64
-
-
0031868374
-
Invasion of HEp-2 and other eukaryotic cell lines by Providenciae: further evidence supporting the role of Providencia alcalifaciens in bacterial gastroenteritis
-
10.1007/s002849900357, 9688814
-
Janda JM, Abbott SL, Woodward D, Khashe S. Invasion of HEp-2 and other eukaryotic cell lines by Providenciae: further evidence supporting the role of Providencia alcalifaciens in bacterial gastroenteritis. Curr Microbiol 1998, 37:159-165. 10.1007/s002849900357, 9688814.
-
(1998)
Curr Microbiol
, vol.37
, pp. 159-165
-
-
Janda, J.M.1
Abbott, S.L.2
Woodward, D.3
Khashe, S.4
|