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Volumn 78, Issue 19, 2012, Pages 7090-7097

Genotyping of present-day and historical geobacillus species isolates from milk powders by high-resolution melt analysis of multiple variable-number tandem-repeat loci

Author keywords

[No Author keywords available]

Indexed keywords

AUSTRALIA; GENOTYPING; HIGH RESOLUTION; MILK POWDER; POLYMORPHIC DNA; POWDER SAMPLES; PROCESSING PLANTS; RAPD-PCR; SPORE COUNT;

EID: 84868519803     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01817-12     Document Type: Article
Times cited : (25)

References (43)
  • 1
    • 84857048246 scopus 로고    scopus 로고
    • Prevalence, antibiotic resistance and RAPD typing of Campylobacter species isolated from ducks, their rearing and processing environments in Penang
    • Adzitey F, Rusul G, Huda N, Cogan T, Corry J. 2012. Prevalence, antibiotic resistance and RAPD typing of Campylobacter species isolated from ducks, their rearing and processing environments in Penang, Malaysia. Int. J. Food Microbiol. 154:197-205.
    • (2012) Malaysia. Int. J. Food Microbiol. , vol.154 , pp. 197-205
    • Adzitey, F.1    Rusul, G.2    Huda, N.3    Cogan, T.4    Corry, J.5
  • 2
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyze DNA sequences
    • Benson G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27:573-580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 3
    • 33847075382 scopus 로고    scopus 로고
    • Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype enteritidis
    • Boxrud D, et al. 2007. Comparison of multiple-locus variable-number tandem repeat analysis, pulsed-field gel electrophoresis, and phage typing for subtype analysis of Salmonella enterica serotype enteritidis. J. Clin. Microbiol. 45:536-543.
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 536-543
    • Boxrud, D.1
  • 4
    • 79955547348 scopus 로고    scopus 로고
    • Modified (M) MLVA for rapid identification and typing of Clostridium difficile during institutional outbreaks
    • [Epub ahead of print.] doi:10.1128/JCM.02359-02310
    • Broukhanski G, Low DE, Pillai DR. 2011. Modified (M) MLVA for rapid identification and typing of Clostridium difficile during institutional outbreaks. J. Clin. Microbiol. [Epub ahead of print.] doi:10.1128/JCM.02359-02310.
    • (2011) J. Clin. Microbiol
    • Broukhanski, G.1    Low, D.E.2    Pillai, D.R.3
  • 5
    • 79957920952 scopus 로고    scopus 로고
    • Multiple-locus variable number of tandem repeat analysis (MLVA) of Listeria monocytogenes directly in food samples
    • Chen S, Li J, Saleh-Lakha S, Allen V, Odumeru J. 2011. Multiple-locus variable number of tandem repeat analysis (MLVA) of Listeria monocytogenes directly in food samples. Int. J. Food Microbiol. 148:8-14.
    • (2011) Int. J. Food Microbiol. , vol.148 , pp. 8-14
    • Chen, S.1    Li, J.2    Saleh-Lakha, S.3    Allen, V.4    Odumeru, J.5
  • 6
    • 79961054757 scopus 로고    scopus 로고
    • Emended descriptions of Geobacillus thermoleovorans and Geobacillus thermocatenulatus
    • Dinsdale AE, et al. 2011. Emended descriptions of Geobacillus thermoleovorans and Geobacillus thermocatenulatus. Int. J. Syst. Evol. Microbiol. 61:1802-1810.
    • (2011) Int. J. Syst. Evol. Microbiol. , vol.61 , pp. 1802-1810
    • Dinsdale, A.E.1
  • 7
    • 33645330138 scopus 로고    scopus 로고
    • Development of molecular typing methods for Bacillus spp. and Paenibacillus spp. isolated from fluid milk products
    • Durak MZ, Fromm HI, Huck JR, Zadoks RN, Boor KJ. 2006. Development of molecular typing methods for Bacillus spp. and Paenibacillus spp. isolated from fluid milk products. J. Food Sci. 71:M50-M56.
    • (2006) J. Food Sci. , vol.71
    • Durak, M.Z.1    Fromm, H.I.2    Huck, J.R.3    Zadoks, R.N.4    Boor, K.J.5
  • 8
    • 1342304133 scopus 로고    scopus 로고
    • eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data
    • Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG. 2004. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J. Bacteriol. 186: 1518-1530.
    • (2004) J. Bacteriol. , vol.186 , pp. 1518-1530
    • Feil, E.J.1    Li, B.C.2    Aanensen, D.M.3    Hanage, W.P.4    Spratt, B.G.5
  • 9
    • 0030971934 scopus 로고    scopus 로고
    • Biofilms in dairy manufacturing plant-description, current concerns and methods of control
    • Flint S, Bremer P, Brooks J. 1997. Biofilms in dairy manufacturing plant-description, current concerns and methods of control. Biofouling 11:81-97.
    • (1997) Biofouling , vol.11 , pp. 81-97
    • Flint, S.1    Bremer, P.2    Brooks, J.3
  • 11
    • 0035711125 scopus 로고    scopus 로고
    • Functional grouping of thermophilic Bacillus strains using amplification profiles of the 16S-23S internal spacer region
    • Flint S, Ward LJH, Walker K. 2001. Functional grouping of thermophilic Bacillus strains using amplification profiles of the 16S-23S internal spacer region. Syst. Appl. Microbiol. 24:539-548.
    • (2001) Syst. Appl. Microbiol. , vol.24 , pp. 539-548
    • Flint, S.1    Ward, L.J.H.2    Walker, K.3
  • 12
    • 34347381296 scopus 로고    scopus 로고
    • Optimization of high-resolution melting analysis for low-cost and rapid screening of allelic variants of Bacillus anthracis by multiple-locus variable-number tandem repeat analysis
    • Fortini D, et al. 2007. Optimization of high-resolution melting analysis for low-cost and rapid screening of allelic variants of Bacillus anthracis by multiple-locus variable-number tandem repeat analysis. Clin. Chem. 53: 1377-1380.
    • (2007) Clin. Chem. , vol.53 , pp. 1377-1380
    • Fortini, D.1
  • 13
    • 84865286374 scopus 로고    scopus 로고
    • PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
    • Francisco AP, et al. 2012. PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods. BMC Bioinformatics 13:87.
    • (2012) BMC Bioinformatics , vol.13 , pp. 87
    • Francisco, A.P.1
  • 14
    • 0034757959 scopus 로고    scopus 로고
    • Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms
    • Grundmann H, Hori S, Tanner G. 2001. Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J. Clin. Microbiol. 39:4190-4192.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 4190-4192
    • Grundmann, H.1    Hori, S.2    Tanner, G.3
  • 15
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity
    • Hunter P, Gaston M. 1988. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26:2465-2466.
    • (1988) J. Clin. Microbiol. , vol.26 , pp. 2465-2466
    • Hunter, P.1    Gaston, M.2
  • 16
    • 0034020175 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis
    • Keim P, et al. 2000. Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis. J. Bacteriol. 182: 2928-2936.
    • (2000) J. Bacteriol. , vol.182 , pp. 2928-2936
    • Keim, P.1
  • 17
    • 4444308959 scopus 로고    scopus 로고
    • Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales
    • Keim P, et al. 2004. Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect. Genet. Evol. 4:205-213.
    • (2004) Infect. Genet. Evol. , vol.4 , pp. 205-213
    • Keim, P.1
  • 18
    • 0034830315 scopus 로고    scopus 로고
    • Identification and characterization of variablenumber tandem repeats in the Yersinia pestis genome
    • Klevytska AM, et al. 2001. Identification and characterization of variablenumber tandem repeats in the Yersinia pestis genome. J. Clin. Microbiol. 39:3179-3185.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3179-3185
    • Klevytska, A.M.1
  • 19
    • 0042956726 scopus 로고    scopus 로고
    • High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing
    • Le Flèche P, Fabre M, Denoeud F, Koeck J, Vergnaud G. 2002. High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing. BMC Microbiol. 2:37.
    • (2002) BMC Microbiol , vol.2 , pp. 37
    • Le Flèche, P.1    Fabre, M.2    Denoeud, F.3    Koeck, J.4    Vergnaud, G.5
  • 20
    • 33745147955 scopus 로고    scopus 로고
    • Evaluation and selection of tandem repeat loci for a Brucella MLVA typing assay
    • Le Flèche P, et al. 2006. Evaluation and selection of tandem repeat loci for a Brucella MLVA typing assay. BMC Microbiol. 6:9.
    • (2006) BMC Microbiol , vol.6 , pp. 9
    • Le Flèche, P.1
  • 22
    • 39149130362 scopus 로고    scopus 로고
    • Application of rpoB sequence similarity analysis REP-PCR and BOX-PCR for the differentiation of species within the genus Geobacillus
    • Meintanis C, et al. 2008. Application of rpoB sequence similarity analysis, REP-PCR and BOX-PCR for the differentiation of species within the genus Geobacillus. Lett. Appl. Microbiol. 46:395-401.
    • (2008) Lett. Appl. Microbiol. , vol.46 , pp. 395-401
    • Meintanis, C.1
  • 23
    • 33847642175 scopus 로고    scopus 로고
    • Development and application of multiple-locus variable number of tandem repeat analysis (MLVA) to subtype a collection of Listeria monocytogenes
    • Murphy M, et al. 2007. Development and application of multiple-locus variable number of tandem repeat analysis (MLVA) to subtype a collection of Listeria monocytogenes. Int. J. Food Microbiol. 115:187-194.
    • (2007) Int. J. Food Microbiol. , vol.115 , pp. 187-194
    • Murphy, M.1
  • 24
    • 33846310352 scopus 로고    scopus 로고
    • Growth of thermophilic spore forming bacilli in milk during the manufacture of low heat powders
    • Murphy P, Lynch D, Kelly P. 1999. Growth of thermophilic spore forming bacilli in milk during the manufacture of low heat powders. Int. J. Dairy Technol. 52:45-50.
    • (1999) Int. J. Dairy Technol. , vol.52 , pp. 45-50
    • Murphy, P.1    Lynch, D.2    Kelly, P.3
  • 25
    • 77956860597 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa outbreak linked to mineral water bottles in a neonatal intensive care unit: fast typing by use of highresolution melting analysis of a variable-number tandem-repeat locus
    • Naze F, et al. 2010. Pseudomonas aeruginosa outbreak linked to mineral water bottles in a neonatal intensive care unit: fast typing by use of highresolution melting analysis of a variable-number tandem-repeat locus. J. Clin. Microbiol. 48:3146-3152.
    • (2010) J. Clin. Microbiol. , vol.48 , pp. 3146-3152
    • Naze, F.1
  • 26
    • 0035064602 scopus 로고    scopus 로고
    • Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans
    • Nazina TN, et al. 2001. Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int. J. Syst. Evol. Microbiol. 51:433-446.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 433-446
    • Nazina, T.N.1
  • 27
    • 0141887443 scopus 로고    scopus 로고
    • Physiology of biofilms of thermophilic bacilli-potential consequences for cleaning
    • Parkar SG, Flint SH, Brooks JD. 2003. Physiology of biofilms of thermophilic bacilli-potential consequences for cleaning. J. Ind. Microbiol. Biotechnol. 30:553-560.
    • (2003) J. Ind. Microbiol. Biotechnol. , vol.30 , pp. 553-560
    • Parkar, S.G.1    Flint, S.H.2    Brooks, J.D.3
  • 28
    • 0034982274 scopus 로고    scopus 로고
    • Factors influencing attachment of thermophilic bacilli to stainless steel
    • Parkar SG, Flint SH, Palmer JS, Brooks JD. 2001. Factors influencing attachment of thermophilic bacilli to stainless steel. J. Appl. Microbiol. 90:901-908.
    • (2001) J. Appl. Microbiol. , vol.90 , pp. 901-908
    • Parkar, S.G.1    Flint, S.H.2    Palmer, J.S.3    Brooks, J.D.4
  • 29
    • 10844243674 scopus 로고    scopus 로고
    • Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes
    • Ramisse V, et al. 2004. Variable number of tandem repeats in Salmonella enterica subsp. enterica for typing purposes. J. Clin. Microbiol. 42:5722-5730.
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 5722-5730
    • Ramisse, V.1
  • 30
    • 77956265375 scopus 로고    scopus 로고
    • Mutation rates of spoligotypes and variable numbers of tandem repeat loci in Mycobacterium tuberculosis
    • Reyes JF, Tanaka MM. 2010. Mutation rates of spoligotypes and variable numbers of tandem repeat loci in Mycobacterium tuberculosis. Infect. Genet. Evol. 10:1046-1051.
    • (2010) Infect. Genet. Evol. , vol.10 , pp. 1046-1051
    • Reyes, J.F.1    Tanaka, M.M.2
  • 31
    • 0141940690 scopus 로고    scopus 로고
    • A RAPD-based comparison of thermophilic bacilli from milk powders
    • Ronimus RS, et al. 2003. A RAPD-based comparison of thermophilic bacilli from milk powders. Int. J. Food Microbiol. 85:45-61.
    • (2003) Int. J. Food Microbiol. , vol.85 , pp. 45-61
    • Ronimus, R.S.1
  • 32
    • 33646458849 scopus 로고    scopus 로고
    • Survival of thermophilic spore-forming bacteria in a 90_year old milk powder from Ernest Shackleton's Cape Royds hut in Antarctica
    • + year old milk powder from Ernest Shackleton's Cape Royds hut in Antarctica. J. Dairy Res. 73:235-243.
    • (2006) J. Dairy Res. , vol.73 , pp. 235-243
    • Ronimus, R.S.1    Rueckert, A.2    Morgan, H.W.3
  • 33
    • 5344224055 scopus 로고    scopus 로고
    • A RAPD-based survey of thermophilic bacilli in milk powders from different countries
    • Rueckert A, Ronimus RS, Morgan HW. 2004. A RAPD-based survey of thermophilic bacilli in milk powders from different countries. Int. J. Food Microbiol. 96:263-272.
    • (2004) Int. J. Food Microbiol. , vol.96 , pp. 263-272
    • Rueckert, A.1    Ronimus, R.S.2    Morgan, H.W.3
  • 34
    • 3843099223 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s
    • Schouls LM, van der Heide HGJ, Vauterin L, Vauterin P, Mooi FR. 2004. Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s. J. Bacteriol. 186:5496-5505.
    • (2004) J. Bacteriol. , vol.186 , pp. 5496-5505
    • Schouls, L.M.1    van der Heide, H.G.J.2    Vauterin, L.3    Vauterin, P.4    Mooi, F.R.5
  • 36
    • 38949211587 scopus 로고    scopus 로고
    • Recovery of spores from thermophilic dairy bacilli and effects of their surface characteristics on attachment to different surfaces
    • Seale RB, Flint SH, McQuillan AJ, Bremer PJ. 2008. Recovery of spores from thermophilic dairy bacilli and effects of their surface characteristics on attachment to different surfaces. Appl. Environ. Microbiol. 74:731-737.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 731-737
    • Seale, R.B.1    Flint, S.H.2    McQuillan, A.J.3    Bremer, P.J.4
  • 37
    • 5444231776 scopus 로고    scopus 로고
    • Multilocus variable-number tandemrepeat polymorphism among Brazilian Enterococcus faecalis strains
    • Titze-de-Almeida R, et al. 2004. Multilocus variable-number tandemrepeat polymorphism among Brazilian Enterococcus faecalis strains. J. Clin. Microbiol. 42:4879-4881.
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 4879-4881
    • Titze-de-Almeida, R.1
  • 38
    • 5444233459 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis, a novel typing scheme to study the genetic relatedness and epidemiology of Enterococcus faecium isolates
    • Top J, Schouls LM, Bonten MJM, Willems RJL. 2004. Multiple-locus variable-number tandem repeat analysis, a novel typing scheme to study the genetic relatedness and epidemiology of Enterococcus faecium isolates. J. Clin. Microbiol. 42:4503-4511.
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 4503-4511
    • Top, J.1    Schouls, L.M.2    Bonten, M.J.M.3    Willems, R.J.L.4
  • 39
    • 38349175824 scopus 로고    scopus 로고
    • Global genetic population structure of Bacillus anthracis
    • doi:10.1371/journal.pone.0000461
    • Van Ert M, et al. 2007. Global genetic population structure of Bacillus anthracis. PLoS One 2:e461. doi:10.1371/journal.pone.0000461.
    • (2007) PLoS One , vol.2
    • Van Ert, M.1
  • 40
    • 33846661637 scopus 로고    scopus 로고
    • Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis
    • Vogler AJ, et al. 2007. Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis. Mutat. Res. 616:145-158.
    • (2007) Mutat. Res. , vol.616 , pp. 145-158
    • Vogler, A.J.1
  • 41
    • 68149160400 scopus 로고    scopus 로고
    • Application of recA and rpoB sequence analysis on phylogeny and molecular identification of Geobacillus species
    • Weng FY, Chiou CS, Lin PHP, Yang SS. 2009. Application of recA and rpoB sequence analysis on phylogeny and molecular identification of Geobacillus species. J. Appl. Microbiol. 107:452-464.
    • (2009) J. Appl. Microbiol. , vol.107 , pp. 452-464
    • Weng, F.Y.1    Chiou, C.S.2    Lin, P.H.P.3    Yang, S.S.4
  • 43
    • 19644362750 scopus 로고    scopus 로고
    • Application of a recN sequence similarity analysis to the identification of species within the bacterial genus Geobacillus
    • Zeigler DR. 2005. Application of a recN sequence similarity analysis to the identification of species within the bacterial genus Geobacillus. Int. J. Syst. Evol. Microbiol. 55:1171-1179.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 1171-1179
    • Zeigler, D.R.1


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