-
1
-
-
0024412402
-
Ribosomal RNA gene restriction patterns provide increased sensitivity for typing Salmonella typhi strains
-
Altwegg, M., F. W. Hickman-Brenner, and J. J. Farmer III. 1989. Ribosomal RNA gene restriction patterns provide increased sensitivity for typing Salmonella typhi strains. J. Infect. Dis. 160:145-149.
-
(1989)
J. Infect. Dis.
, vol.160
, pp. 145-149
-
-
Altwegg, M.1
Hickman-Brenner, F.W.2
Farmer III, J.J.3
-
2
-
-
0017614807
-
Bacteriophage-typing designations of Salmonella typhimurium
-
London
-
Anderson, E. S., L. R. Ward, and M. J. de Saxe. 1977. Bacteriophage-typing designations of Salmonella typhimurium. J. Hyg. (London) 78:297-300.
-
(1977)
J. Hyg.
, vol.78
, pp. 297-300
-
-
Anderson, E.S.1
Ward, L.R.2
De Saxe, M.J.3
-
3
-
-
0031662669
-
Evolution of host adaptation in Salmonella enterica
-
Bäumler, A. J., R. M. Tsolis, T. A. Ficht, and L. G. Adams. 1998. Evolution of host adaptation in Salmonella enterica. Infect. Immun. 66:4579-4587.
-
(1998)
Infect. Immun.
, vol.66
, pp. 4579-4587
-
-
Bäumler, A.J.1
Tsolis, R.M.2
Ficht, T.A.3
Adams, L.G.4
-
4
-
-
0027214445
-
Salmonella reference collection B (SARB): Strains of 37 serovars of subspecies I
-
Boyd, E. F., F. S. Wang, P. Beltran, S. A. Plock, K. Nelson, and R. K. Selander. 1993. Salmonella reference collection B (SARB): strains of 37 serovars of subspecies I. J. Gen. Microbiol. 139:1125-1132.
-
(1993)
J. Gen. Microbiol.
, vol.139
, pp. 1125-1132
-
-
Boyd, E.F.1
Wang, F.S.2
Beltran, P.3
Plock, S.A.4
Nelson, K.5
Selander, R.K.6
-
5
-
-
0003802482
-
-
American Public Health Association, Washington, D.C.
-
Chin, J. 2000. Control of communicable diseases manual, p. 623. American Public Health Association, Washington, D.C.
-
(2000)
Control of Communicable Diseases Manual
, pp. 623
-
-
Chin, J.1
-
6
-
-
3142733354
-
The demonstration of types of B typhosus by means of preparations of type II Vi phage. II The stability and epidemiological significance of V form types of B typhosus
-
Craigie, J., and C. H. Yen. 1938. The demonstration of types of B typhosus by means of preparations of type II Vi phage. II The stability and epidemiological significance of V form types of B typhosus. Can. Public Health J. 29:484-496.
-
(1938)
Can. Public Health J.
, vol.29
, pp. 484-496
-
-
Craigie, J.1
Yen, C.H.2
-
7
-
-
0037377818
-
Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18
-
Deng, W., S.-R. Liou, G. Plunkett, G. F. Mayhew, D. J. Rose, V. Burland, V. Kodoyianni, D. C. Schwartz, and F. R. Blattner. 2003. Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. J. Bacteriol. 185:2330-2337.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 2330-2337
-
-
Deng, W.1
Liou, S.-R.2
Plunkett, G.3
Mayhew, G.F.4
Rose, D.J.5
Burland, V.6
Kodoyianni, V.7
Schwartz, D.C.8
Blattner, F.R.9
-
8
-
-
2942542734
-
Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: A Web-based resource
-
Denoeud, F., and G. Vergnaud. 2004. Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a Web-based resource. BMC Bioinformatics 5:4.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 4
-
-
Denoeud, F.1
Vergnaud, G.2
-
9
-
-
0028943645
-
Analysis of Salmonella enteritidis isolates by arbitrary primed PCR
-
Fald, A. A., A. V. Nguyen, and M. I. Khan. 1995. Analysis of Salmonella enteritidis isolates by arbitrary primed PCR. J. Clin. Microbiol. 33:987-989.
-
(1995)
J. Clin. Microbiol.
, vol.33
, pp. 987-989
-
-
Fald, A.A.1
Nguyen, A.V.2
Khan, M.I.3
-
10
-
-
0034830369
-
Francisella tularensis strain typing using multiple-locus variable-number tandem repeat analysis
-
Farlow, J., K. L. Smith, J. Wong, M. Abrams, M. Lytle, and P. Keim. 2001. Francisella tularensis strain typing using multiple-locus variable-number tandem repeat analysis. J. Clin. Microbiol. 39:3186-3192.
-
(2001)
J. Clin. Microbiol.
, vol.39
, pp. 3186-3192
-
-
Farlow, J.1
Smith, K.L.2
Wong, J.3
Abrams, M.4
Lytle, M.5
Keim, P.6
-
11
-
-
0029891062
-
Epidemic typhoid in Chile: Analysis by molecular and conventional methods of Salmonella typhi strain diversity in epidemic (1977 and1981) and nonepidemic (1990) years
-
Fica, A. E., S. Prat-Miranda, A. Fernandez-Ricci, K. D'Ottone, and F. C. Cabello. 1996. Epidemic typhoid in Chile: analysis by molecular and conventional methods of Salmonella typhi strain diversity in epidemic (1977 and1981) and nonepidemic (1990) years. J. Clin. Microbiol. 34:1701-1707.
-
(1996)
J. Clin. Microbiol.
, vol.34
, pp. 1701-1707
-
-
Fica, A.E.1
Prat-Miranda, S.2
Fernandez-Ricci, A.3
D'Ottone, K.4
Cabello, F.C.5
-
12
-
-
0036701970
-
Molecular characterization of multidrug-resistant Salmonella enterica subsp. enterica serovar Typhimurium
-
Gebreyes, A. W., and C. Altier. 2002. Molecular characterization of multidrug-resistant Salmonella enterica subsp. enterica serovar Typhimurium. J. Clin. Microbiol. 40:2813-2822.
-
(2002)
J. Clin. Microbiol.
, vol.40
, pp. 2813-2822
-
-
Gebreyes, A.W.1
Altier, C.2
-
13
-
-
0031807724
-
Molecular fingerprinting of multidrug-resistant Salmonella enterica serotype Typhi
-
Hampton, M. D., L. R. Ward, B. Rowe, and E. J. Threlfall. 1998. Molecular fingerprinting of multidrug-resistant Salmonella enterica serotype Typhi. Emerg. Infect. Dis. 4:317-320.
-
(1998)
Emerg. Infect. Dis.
, vol.4
, pp. 317-320
-
-
Hampton, M.D.1
Ward, L.R.2
Rowe, B.3
Threlfall, E.J.4
-
14
-
-
0031830171
-
Molecular characterization of multiresistant strains of Salmonella typhi from South Asia isolated in Ontario, Canada
-
Harnett, N., S. McLeod, Y. Au Yong, J. Wan, S. Alexander, R. Khakhria, and C. Krishnan. 1998. Molecular characterization of multiresistant strains of Salmonella typhi from South Asia isolated in Ontario, Canada. Can. J. Microbiol. 44:356-363.
-
(1998)
Can. J. Microbiol.
, vol.44
, pp. 356-363
-
-
Harnett, N.1
McLeod, S.2
Au Yong, Y.3
Wan, J.4
Alexander, S.5
Khakhria, R.6
Krishnan, C.7
-
15
-
-
0036246561
-
Multilocus sequence typing for characterization of clinical and environmental Salmonella strains
-
Kotetishvili, M., O. C. Stine, A. Kreger, J. G. Morris, and A. Sulakvelidze. 2002. Multilocus sequence typing for characterization of clinical and environmental Salmonella strains. J. Clin. Microbiol. 40:1626-1635.
-
(2002)
J. Clin. Microbiol.
, vol.40
, pp. 1626-1635
-
-
Kotetishvili, M.1
Stine, O.C.2
Kreger, A.3
Morris, J.G.4
Sulakvelidze, A.5
-
16
-
-
0042956726
-
High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing
-
Le Flèche, P., M. Fabre, F. Denoeud, J.-L. Koeck, and G. Vergnaud. 2002. High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing. BMC Microbiol. 2:37.
-
(2002)
BMC Microbiol.
, vol.2
, pp. 37
-
-
Le Flèche, P.1
Fabre, M.2
Denoeud, F.3
Koeck, J.-L.4
Vergnaud, G.5
-
17
-
-
19044366369
-
A tandem repeats database for bacterial genomes: Application to the genotyping of Yersinia pestis and Bacillus anthracis
-
Le Flèche, P., Y. Hauck, L. Onteniente, A. Prieur, F. Denoeud, V. Ramisse, P. Sylvestre, G. Benson, F. Ramisse, and G. Vergnaud. 2001. A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis. BMC Microbiol. 1:2.
-
(2001)
BMC Microbiol.
, vol.1
, pp. 2
-
-
Le Flèche, P.1
Hauck, Y.2
Onteniente, L.3
Prieur, A.4
Denoeud, F.5
Ramisse, V.6
Sylvestre, P.7
Benson, G.8
Ramisse, F.9
Vergnaud, G.10
-
18
-
-
0037387157
-
DNA fingerprinting of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci
-
Lindstedt, B. A., E. Heir, E. Gjernes, and G. Kapperud. 2003. DNA fingerprinting of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci. J. Clin. Microbiol. 41:1469-1479.
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 1469-1479
-
-
Lindstedt, B.A.1
Heir, E.2
Gjernes, E.3
Kapperud, G.4
-
19
-
-
3242673571
-
Multiple-locus variable-number tandem-repeats analysis of Escherichia coli O157 using PCR multiplexing and multi-colored capillary electrophoresis
-
Lindstedt, B. A., T. Vardun, and G. Kapperud. 2004. Multiple-locus variable-number tandem-repeats analysis of Escherichia coli O157 using PCR multiplexing and multi-colored capillary electrophoresis. J. Microbiol. Methods 58:213-222.
-
(2004)
J. Microbiol. Methods
, vol.58
, pp. 213-222
-
-
Lindstedt, B.A.1
Vardun, T.2
Kapperud, G.3
-
20
-
-
0042921111
-
Molecular typing of Salmonella enterica serovar Typhi isolates from various countries in Asia by a multiplex PCR assay on variable-number tandem repeats
-
Liu, Y., M.-A. Lee, E.-E. Ooi, Y. Mavis, A.-L. Tan, and H.-H. Quek. 2003. Molecular typing of Salmonella enterica serovar Typhi isolates from various countries in Asia by a multiplex PCR assay on variable-number tandem repeats. J. Clin. Microbiol. 41:4388-4394.
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 4388-4394
-
-
Liu, Y.1
Lee, M.-A.2
Ooi, E.-E.3
Mavis, Y.4
Tan, A.-L.5
Quek, H.-H.6
-
21
-
-
13144252236
-
Multilocus sequence typing: A portable approach to the identification of clones within populations of pathogenic microorganisms
-
Maiden, M. C. J., J. A. Bygraves, E. Feil, G. Morelli, J. E. Russell, R. Urwin, Q. Zhang, J. Zhou, K. Zurth, D. A. Caugant, I. M. Feavers, M. Achtman, and B. G. Spratt. 1998. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl. Acad. Sci. USA 95:3140-3145.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3140-3145
-
-
Maiden, M.C.J.1
Bygraves, J.A.2
Feil, E.3
Morelli, G.4
Russell, J.E.5
Urwin, R.6
Zhang, Q.7
Zhou, J.8
Zurth, K.9
Caugant, D.A.10
Feavers, I.M.11
Achtman, M.12
Spratt, B.G.13
-
22
-
-
0034092655
-
Multiple clones within multidrug-resistant Salmonella enterica serotype Typhimurium phage type DT104
-
Markogiannakis, A., P. T. Tassios, M. Lambiri, L. R. Ward, J. Kourea-Kremastinou, N. J. Legakis, The Greek Nontyphoidal Salmonella Study Group, and A. C. Vatopoulos. 2000. Multiple clones within multidrug-resistant Salmonella enterica serotype Typhimurium phage type DT104. J. Clin. Microbiol. 38:1269-1271.
-
(2000)
J. Clin. Microbiol.
, vol.38
, pp. 1269-1271
-
-
Markogiannakis, A.1
Tassios, P.T.2
Lambiri, M.3
Ward, L.R.4
Kourea-Kremastinou, J.5
Legakis, N.J.6
Vatopoulos, A.C.7
-
23
-
-
0035950182
-
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
-
McClelland, M., K. E. Sanderson, J. Spieth, S. W. Clifton, P. Latreille, L. Courtney, S. Porwollik, J. Ali, M. Dante, F. Du, S. Hou, D. Layman, S. Leonard, C. Nguyen, K. Scott, A. Holmes, N. Grewal, E. Mulvaney, E. Ryan, H. Sun, L. Florea, W. Miller, T. Stoneking, M. Nhan, R. Waterston, and R. K. Wilson. 2001. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 413:852-856.
-
(2001)
Nature
, vol.413
, pp. 852-856
-
-
McClelland, M.1
Sanderson, K.E.2
Spieth, J.3
Clifton, S.W.4
Latreille, P.5
Courtney, L.6
Porwollik, S.7
Ali, J.8
Dante, M.9
Du, F.10
Hou, S.11
Layman, D.12
Leonard, S.13
Nguyen, C.14
Scott, K.15
Holmes, A.16
Grewal, N.17
Mulvaney, E.18
Ryan, E.19
Sun, H.20
Florea, L.21
Miller, W.22
Stoneking, T.23
Nhan, M.24
Waterston, R.25
Wilson, R.K.26
more..
-
24
-
-
0242677631
-
Evaluation of the polymorphism associated with tandem repeats for Pseudomonas aeruginosa strain typing
-
Oteniente, L., S. Brisse, P. T. Tassios, and G. Vergnaud. 2003. Evaluation of the polymorphism associated with tandem repeats for Pseudomonas aeruginosa strain typing. J. Clin. Microbiol. 41:4991-4997.
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 4991-4997
-
-
Oteniente, L.1
Brisse, S.2
Tassios, P.T.3
Vergnaud, G.4
-
25
-
-
0035950154
-
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
-
Parkhill, J., G. Dougan, K. D. James, N. R. Thomson, D. Pickard, J. Wain, C. Churcher, K. L. Mungall, S. D. Bentley, M. T. Holden, M. Sebaihia, S. Baker, D. Basham, K. Brooks, T. Chillingworth, P. Connerton, A. Cronin, P. Davis, R. M. Davies, L. Dowd, N. White, J. Farrar, T. Feltwell, N. Hamlin, A. Haque, T. T. Hien, S. Holroyd, K. Jagels, A. Krogh, T. S. Larsen, S. Leather, S. Moule, P. O'Gaora, C. Parry, M. Quail, K. Rutherford, M. Simmonds, J. Skelton, K. Stevens, S. Whitehead, and B. G. Barrell. 2001. Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 413:848-852.
-
(2001)
Nature
, vol.413
, pp. 848-852
-
-
Parkhill, J.1
Dougan, G.2
James, K.D.3
Thomson, N.R.4
Pickard, D.5
Wain, J.6
Churcher, C.7
Mungall, K.L.8
Bentley, S.D.9
Holden, M.T.10
Sebaihia, M.11
Baker, S.12
Basham, D.13
Brooks, K.14
Chillingworth, T.15
Connerton, P.16
Cronin, A.17
Davis, P.18
Davies, R.M.19
Dowd, L.20
White, N.21
Farrar, J.22
Feltwell, T.23
Hamlin, N.24
Haque, A.25
Hien, T.T.26
Holroyd, S.27
Jagels, K.28
Krogh, A.29
Larsen, T.S.30
Leather, S.31
Moule, S.32
O'Gaora, P.33
Parry, C.34
Quail, M.35
Rutherford, K.36
Simmonds, M.37
Skelton, J.38
Stevens, K.39
Whitehead, S.40
Barrell, B.G.41
more..
-
26
-
-
0037318226
-
The Salm-gene project - A European collaboration for DNA fingerprinting for food-related salmonellosis
-
Peters, T. M., C. Maguire, E. J. Threlfall, I. S. T. Fisher, N. Gill, and A. J. Gatto. 2003. The Salm-gene project - a European collaboration for DNA fingerprinting for food-related salmonellosis. Eurosurveillance 8:46-50.
-
(2003)
Eurosurveillance
, vol.8
, pp. 46-50
-
-
Peters, T.M.1
Maguire, C.2
Threlfall, E.J.3
Fisher, I.S.T.4
Gill, N.5
Gatto, A.J.6
-
27
-
-
4844223197
-
Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis
-
Pourcel, C., F. André-Mazeaud, H. Neubauer, F. Remisse, and G. Vergnaud. 2004. Tandem repeats analysis for the high resolution phylogenetic analysis of Yersinia pestis. BMC Microbiol. 4:22.
-
(2004)
BMC Microbiol.
, vol.4
, pp. 22
-
-
Pourcel, C.1
André-Mazeaud, F.2
Neubauer, H.3
Remisse, F.4
Vergnaud, G.5
-
28
-
-
0038629278
-
Characterization of a tandem polymorphism in Legionella pneumophila and its use for genotyping
-
Pourcel, C., Y. Vidgop, F. Ramisse, G. Vergnaud, and C. Tram. 2003. Characterization of a tandem polymorphism in Legionella pneumophila and its use for genotyping. J. Clin. Microbiol. 41:1819-1826.
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 1819-1826
-
-
Pourcel, C.1
Vidgop, Y.2
Ramisse, F.3
Vergnaud, G.4
Tram, C.5
-
29
-
-
0033924850
-
Outbreak of typhoid fever on the French Riviera
-
Pradier, C., O. Keita-Perse, E. Bernard, C. Gisbert, M. J. Vezolles, A. Armengaud, D. Carles, F. Grimont, J. C. Desenclos, and P. Dellamonica. 2000. Outbreak of typhoid fever on the French Riviera. Eur. J. Clin. Microbiol. Infect. Dis. 19:464-467.
-
(2000)
Eur. J. Clin. Microbiol. Infect. Dis.
, vol.19
, pp. 464-467
-
-
Pradier, C.1
Keita-Perse, O.2
Bernard, E.3
Gisbert, C.4
Vezolles, M.J.5
Armengaud, A.6
Carles, D.7
Grimont, F.8
Desenclos, J.C.9
Dellamonica, P.10
-
30
-
-
0033213043
-
Clonal relationship of Salmonella enterica serovar Typhimurium phage type DT104 in Germany and Austria
-
Prager, R., A. Liesegang, W. Rabsch, B. Gericke, W. Thiel, W. Voigt, R. Helmut, L. Ward, and H. Tschape. 1999. Clonal relationship of Salmonella enterica serovar Typhimurium phage type DT104 in Germany and Austria. Zentbl. Bakteriol. Parasitenkd. Infektkrankh. Hyg. Abt. 1 Orig. 289:399-414.
-
(1999)
Zentbl. Bakteriol. Parasitenkd. Infektkrankh. Hyg. Abt. 1 Orig.
, vol.289
, pp. 399-414
-
-
Prager, R.1
Liesegang, A.2
Rabsch, W.3
Gericke, B.4
Thiel, W.5
Voigt, W.6
Helmut, R.7
Ward, L.8
Tschape, H.9
-
31
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
S. Misener and S. Krawetz (ed.), Humana Press, Totowa, N.J.
-
Rozen, S., and H. J. Skaletsky. 2000. Primer3 on the WWW for general users and for biologist programmers, p. 365. In S. Misener and S. Krawetz (ed.), Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, N.J.
-
(2000)
Bioinformatics Methods and Protocols: Methods in Molecular Biology
, pp. 365
-
-
Rozen, S.1
Skaletsky, H.J.2
-
32
-
-
0031958301
-
Molecular analysis of and identification of antibiotic resistance genes in clinical isolates of Salmonella typhi from India
-
Shanahan, P. M. A., M. V. Jesudason, C. J. Thomson, and S. G. B. Amyes. 1998. Molecular analysis of and identification of antibiotic resistance genes in clinical isolates of Salmonella typhi from India. J. Clin. Microbiol. 36:1595-1600.
-
(1998)
J. Clin. Microbiol.
, vol.36
, pp. 1595-1600
-
-
Shanahan, P.M.A.1
Jesudason, M.V.2
Thomson, C.J.3
Amyes, S.G.B.4
-
33
-
-
0028196778
-
Epidemiologic analysis of sporadic Salmonella typhi isolates and those from outbreaks by pulse-field gel electrophoresis
-
Thong, K. L., Y. M. Cheong, S. Puthucheary, C. L. Koh, and T. Pang. 1994. Epidemiologic analysis of sporadic Salmonella typhi isolates and those from outbreaks by pulse-field gel electrophoresis. J. Clin. Microbiol. 32:1135-1141.
-
(1994)
J. Clin. Microbiol.
, vol.32
, pp. 1135-1141
-
-
Thong, K.L.1
Cheong, Y.M.2
Puthucheary, S.3
Koh, C.L.4
Pang, T.5
-
34
-
-
0032723767
-
Short sequence repeats in microbial pathogenesis and evolution
-
Van Belkum, A. 1999. Short sequence repeats in microbial pathogenesis and evolution. Cell. Mol. Life Sci. 56:729-734.
-
(1999)
Cell. Mol. Life Sci.
, vol.56
, pp. 729-734
-
-
Van Belkum, A.1
-
35
-
-
0031838719
-
Short-sequence DNA repeats in prokaryotic genomes
-
Van Belkum, A., S. Scherer, L. Van Alphen, and H. Verbrugh. 1998. Short-sequence DNA repeats in prokaryotic genomes. Microbiol. Mol. Biol. Rev. 62:275-293.
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 275-293
-
-
Van Belkum, A.1
Scherer, S.2
Van Alphen, L.3
Verbrugh, H.4
-
36
-
-
0027096070
-
Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov.
-
Yabuuchi, E., Y. Kosako, H. Oyaizu, I. Yano, H. Hotta, Y. Hashimoto, T. Ezaki, and M. Arakawa. 1992. Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol. Immunol. 36:1251-1275.
-
(1992)
Microbiol. Immunol.
, vol.36
, pp. 1251-1275
-
-
Yabuuchi, E.1
Kosako, Y.2
Oyaizu, H.3
Yano, I.4
Hotta, H.5
Hashimoto, Y.6
Ezaki, T.7
Arakawa, M.8
|