Pseudomonas aeruginosa outbreak linked to mineral water bottles in a neonatal intensive care unit: Fast typing by use of high-resolution melting analysis of a variable-number tandem-repeat locus

Journal of Clinical Microbiology

Volumn 48, Issue 9, 2010, Pages 3146-3152

  Naze, F ^a   Jouen, E ^b   Randriamahazo, R T ^a   Simac, C ^a   Laurent, P ^a   Bleriot A ^a   Chiroleu, F ^b   Gagnevin, L ^b   Pruvost, O ^b   Michault, A ^a  

^a Groupe Hospitalier Sud Reunion   (France)

^b UNIVERSITÉ DE LA RÉUNION   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MINERAL WATER;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BACTERIAL STRAIN; BACTERIUM DETECTION; BIOSURVEILLANCE; CONTROLLED STUDY; GENETIC VARIABILITY; GENOTYPE; HIGH RESOLUTION MELTING ANALYSIS; INOCULATION; NEWBORN INTENSIVE CARE; NONHUMAN; PLASTIC BOTTLE; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; REFERENCE VALUE; VARIABLE NUMBER OF TANDEM REPEAT;

BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; CROSS INFECTION; DISEASE OUTBREAKS; DNA FINGERPRINTING; GENOTYPE; HUMANS; INFANT, NEWBORN; INTENSIVE CARE, NEONATAL; MINERAL WATERS; MINISATELLITE REPEATS; MOLECULAR EPIDEMIOLOGY; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS INFECTIONS; TRANSITION TEMPERATURE;

PSEUDOMONAS AERUGINOSA;

EID: 77956860597     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00402-10     Document Type: Article

References (39)

1. Ah-You, N., L. Gagnevin, F. Chiroleu, E. Jouen, J. R. Neto, and O. Pruvost. 2007. Pathological variations within Xanthomonas campestris pv. mangiferaeindicae support its separation into three distinct pathovars that can be distinguished by amplified fragment length polymorphism. Phytopathology 97:1568-1577. (Pubitemid 350304599)
2. Bert, F., E. Maubec, B. Bruneau, P. Berry, and N. Lambert-Zechovsky. 1998. Multi-resistant Pseudomonas aeruginosa outbreak associated with contaminated tap water in a neurosurgery intensive care unit. J. Hosp. Infect. 39:53-62.
3. Berthelot, P., F. Grattard, P. Mahul, P. Pain, R. Jospe, C. Venet, A. Carricajo, G. Aubert, A. Ros, A. Dumont, F. Lucht, F. Zeni, C. Auboyer, J. C. Bertrand, and B. Pozzetto. 2001. Prospective study of nosocomial colonization and infection due to Pseudomonas aeruginosa in mechanically ventilated patients. Intensive Care Med. 27:503-512. (Pubitemid 32250079)
4. Blanc, D. S., P. Francioli, and G. Zanetti. 2007. Molecular epidemiology of Pseudomonas aeruginosa in the intensive care units-a review. Open Microbiol. J. 1:8-11.
5. Crivaro, V., A. Di Popolo, A. Caprio, A. Lambiase, M. Di Resta, T. Borriello, A. Scarcella, M. Triassi, and R. Zarrilli. 2009. Pseudomonas aeruginosa in a neonatal intensive care unit: molecular epidemiology and infection control measures. BMC Infect. Dis. 9:70.
6. D'Agata, E. M., M. M. Gerrits, Y. W. Tang, M. Samore, and J. G. Kusters. 2001. Comparison of pulsed-field gel electrophoresis and amplified fragment- length polymorphism for epidemiological investigations of common nosocomial pathogens. Infect. Control Hosp. Epidemiol. 22:550-554.
7. Dice, L. R. 1945. Measures of the amount of ecologic association between species. Ecology 26:297-302.
8. Doleans-Jordheim, A., B. Cournoyer, E. Bergeron, J. Croize, H. Salord, J. Andre, M. A. Mazoyer, F. N. Renaud, and J. Freney. 2009. Reliability of Pseudomonas aeruginosa semi-automated rep-PCR genotyping in various epidemiological situations. Eur. J. Clin. Microbiol. Infect. Dis. 28:1105-1111.
9. Dray, S., and A. B. Dufour. 2007. The ade4 package: implementing the duality diagram for ecologists. J. Stat. Softw. 22:1-20.
10. Eckmanns, T., M. Oppert, M. Martin, R. Amorosa, I. Zuschneid, U. Frei, H. Ruden, and K. Weist. 2008. An outbreak of hospital-acquired Pseudomonas aeruginosa infection caused by contaminated bottled water in intensive care units. Clin. Microbiol. Infect. 14:454-458.
11. Fanci, R., B. Bartolozzi, S. Sergi, E. Casalone, P. Pecile, D. Cecconi, R. Mannino, F. Donnarumma, A. G. Leon, S. Guidi, P. Nicoletti, G. Mastromei, and A. Bosi. 2009. Molecular epidemiological investigation of an outbreak of Pseudomonas aeruginosa infection in an SCT unit. Bone Marrow Transplant. 43:335-338.
12. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
13. Franco, J., J. Crossa, J. M. Ribaut, J. Betran, M. L. Warburton, and M. Khairallah. 2001. A method for combining molecular markers and phenotypic attributes for classifying plant genotypes. Theor. Appl. Genet. 103:944-952.
14. Gerardin, P., K. Farny, C. Simac, A. F. Laurent, B. Grandbastien, and P. Y. Robillard. 2006. Pseudomonas aeruginosa infections in a neonatal care unit at Reunion Island. Arch. Pediatr. 13:1500-1506.
15. Gordon, A. D. 1999. Classification, vol. 1. CRC Press, Boca Raton, FL.
16. Hafiane, A., and M. Ravaoarinoro. 2008. Various typing methods of Pseudomonas aeruginosa strains isolated from cystic fibrosis patients. Med. Mal. Infect. 38:238-247.
17. Hennig, C. 2009. Fixed point clusters, clusterwise regression and discriminant plots. R package, version 1.2-4. http://www.homepages.ucl.ac.uk/ ~ucakche/.
18. Hubert, L., and P. Arabie. 1985. Comparing partitions. J. Classif. 2:193-218.
19. Hunter, P. R. 1990. Reproducibility and indices of discriminatory power of microbial typing methods. J. Clin. Microbiol. 28:1903-1905.
20. Johnson, J. K., S. M. Arduino, O. C. Stine, J. A. Johnson, and A. D. Harris. 2007. Multilocus sequence typing compared to pulsed-field gel electrophoresis for molecular typing of Pseudomonas aeruginosa. J. Clin. Microbiol. 45:3707-3712.
21. Kayabas, U., M. Bayraktar, B. Otlu, M. Ugras, Y. Ersoy, Y. Bayindir, and R. Durmaz. 2008. An outbreak of Pseudomonas aeruginosa because of inadequate disinfection procedures in a urology unit: a pulsed-field gel electrophoresis- based epidemiologic study. Am. J. Infect. Control 36:33-38.
22. Kenchappa, P., V. S. Sangwan, N. Ahmed, K. R. Rao, A. Pathengay, A. Mathai, T. Mansoori, T. Das, S. E. Hasnain, and S. Sharma. 2005. High-resolution genotyping of Pseudomonas aeruginosa strains linked to acute post cataract surgery endophthalmitis outbreaks in India. Ann. Clin. Microbiol. Antimicrob. 4:19.
23. Kendall, M. G., and B. Babington Smith. 1939. The problem of m rankings. Ann. Math. Stat. 10:275-287.
24. Liew, M., R. Pryor, R. Palais, C. Meadows, M. Erali, E. Lyon, and C. Wittwer. 2004. Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons. Clin. Chem. 50:1156-1164.
25. Mammina, C., P. Di Carlo, D. Cipolla, A. Casuccio, M. Tantillo, M. R. Plano, A. Mazzola, and G. Corsello. 2008. Nosocomial colonization due to imipenem-resistant Pseudomonas aeruginosa epidemiologically linked to breast milk feeding in a neonatal intensive care unit. Acta Pharmacol. Sin. 29:1486-1492.
26. Odell, I. D., J. L. Cloud, M. Seipp, and C. T. Wittwer. 2005. Rapid species identification within the Mycobacterium chelonae-abscessus group by highresolution melting analysis of hsp65 PCR products. Am. J. Clin. Pathol. 123:96-101.
27. Olive, D. M., and P. Bean. 1999. Principles and applications of methods for DNA-based typing of microbial organisms. J. Clin. Microbiol. 37:1661-1669.
28. Onteniente, L., S. Brisse, P. T. Tassios, and G. Vergnaud. 2003. Evaluation of the polymorphisms associated with tandem repeats for Pseudomonas aeruginosa strain typing. J. Clin. Microbiol. 41:4991-4997.
29. Paradis, E., J. Claude, and K. Strimmer. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20:289-290. (Pubitemid 38195693)
30. Pirnay, J. P., D. De Vos, C. Cochez, F. Bilocq, J. Pirson, M. Struelens, L. Duinslaeger, P. Cornelis, M. Zizi, and A. Vanderkelen. 2003. Molecular epidemiology of Pseudomonas aeruginosa colonization in a burn unit: persistence of a multidrug-resistant clone and a silver sulfadiazine-resistant clone. J. Clin. Microbiol. 41:1192-1202.
31. Rand, W. M. 1971. Objective criteria for the evaluation of clustering methods. J. Am. Stat. Assoc. 66:846-850.
32. R Development Core Team. 2007. A language and environment for statistical computing. R. F. F. S. Computing, Vienna, Austria.
33. Rogues, A. M., H. Boulestreau, A. Lasheras, A. Boyer, D. Gruson, C. Merle, Y. Castaing, C. M. Bebear, and J. P. Gachie. 2007. Contribution of tap water to patient colonisation with Pseudomonas aeruginosa in a medical intensive care unit. J. Hosp. Infect. 67:72-78.
34. Sanchez-Carrillo, C., B. Padilla, M. Marin, M. Rivera, E. Cercenado, D. Vigil, M. Sanchez-Luna, and E. Bouza. 2009. Contaminated feeding bottles: the source of an outbreak of Pseudomonas aeruginosa infections in a neonatal intensive care unit. Am. J. Infect. Control 37:150-154.
35. Speijer, H., P. H. Savelkoul, M. J. Bonten, E. E. Stobberingh, and J. H. Tjhie. 1999. Application of different genotyping methods for Pseudomonas aeruginosa in a setting of endemicity in an intensive care unit. J. Clin. Microbiol. 37:3654-3661.
36. Syrmis, M. W., M. R. O'Carroll, T. P. Sloots, C. Coulter, C. E. Wainwright, S. C. Bell, and M. D. Nissen. 2004. Rapid genotyping of Pseudomonas aeruginosa isolates harboured by adult and paediatric patients with cystic fibrosis using repetitive-element-based PCR assays. J. Med. Microbiol. 53: 1089-1096.
37. Trautmann, M., P. M. Lepper, and M. Haller. 2005. Ecology of Pseudomonas aeruginosa in the intensive care unit and the evolving role of water outlets as a reservoir of the organism. Am. J. Infect. Control 33:S41-S49.
38. Vu-Thien, H., G. Corbineau, K. Hormigos, B. Fauroux, H. Corvol, A. Clement, G. Vergnaud, and C. Pourcel. 2007. Multiple-locus variable-number tandem-repeat analysis for longitudinal survey of sources of Pseudomonas aeruginosa infection in cystic fibrosis patients. J. Clin. Microbiol. 45:3175-3183.
39. Waters, V., E. Larson, F. Wu, P. San Gabriel, J. Haas, J. Cimiotti, P. Della-Latta, and L. Saiman. 2004. Molecular epidemiology of gram-negative bacilli from infected neonates and health care workers' hands in neonatal intensive care units. Clin. Infect. Dis. 38:1682-1687.