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Volumn 22, Issue 11, 2012, Pages 2262-2269

Spark: A navigational paradigm for genomic data exploration

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; C TERMINAL BINDING PROTEIN 2; TRANSCRIPTION FACTOR YY1; UNCLASSIFIED DRUG;

EID: 84868328797     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.140665.112     Document Type: Article
Times cited : (28)

References (33)
  • 5
    • 0032087892 scopus 로고    scopus 로고
    • The Drosophila Polycomb group gene pleiohomeotic encodes a DNA binding protein with homology to the transcription factor YY1
    • Brown JL, Mucci D, Whiteley M, Dirksen ML, Kassis JA. 1998. The Drosophila Polycomb group gene pleiohomeotic encodes a DNA binding protein with homology to the transcription factor YY1. Mol Cell 1:1057-1064.
    • (1998) Mol Cell , vol.1 , pp. 1057-1064
    • Brown, J.L.1    Mucci, D.2    Whiteley, M.3    Dirksen, M.L.4    Kassis, J.A.5
  • 8
    • 0037232925 scopus 로고    scopus 로고
    • CtBP family proteins: More than transcriptional corepressors
    • Chinnadurai G. 2003. CtBP family proteins: More than transcriptional corepressors. Bioessays 25:9-12.
    • (2003) Bioessays , vol.25 , pp. 9-12
    • Chinnadurai, G.1
  • 9
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489:57-74.
    • (2012) Nature , vol.489 , pp. 57-74
  • 10
    • 78650747491 scopus 로고    scopus 로고
    • Discovery and characterization of chromatin states for systematic annotation of the human genome
    • Ernst J, Kellis M. 2010. Discovery and characterization of chromatin states for systematic annotation of the human genome. Nat Biotechnol 28:817-825.
    • (2010) Nat Biotechnol , vol.28 , pp. 817-825
    • Ernst, J.1    Kellis, M.2
  • 11
    • 48249140621 scopus 로고    scopus 로고
    • FindPeaks 3.1: A tool for identifying areas of enrichment from massively parallel short-read sequencing technology
    • Fejes AP, Robertson G, Bilenky M, Varhol R, Bainbridge M, Jones SJ. 2008. FindPeaks 3.1: A tool for identifying areas of enrichment from massively parallel short-read sequencing technology. Bioinformatics 24:1729-1730.
    • (2008) Bioinformatics , vol.24 , pp. 1729-1730
    • Fejes, A.P.1    Robertson, G.2    Bilenky, M.3    Varhol, R.4    Bainbridge, M.5    Jones, S.J.6
  • 15
    • 0036314926 scopus 로고    scopus 로고
    • Overlapping and unique roles for C-terminal binding protein 1 (CtBP1) and CtBP2 during mouse development
    • Hildebrand JD, Soriano P. 2002. Overlapping and unique roles for C-terminal binding protein 1 (CtBP1) and CtBP2 during mouse development. Mol Cell Biol 22:5296-5307.
    • (2002) Mol Cell Biol , vol.22 , pp. 5296-5307
    • Hildebrand, J.D.1    Soriano, P.2
  • 16
    • 84862785201 scopus 로고    scopus 로고
    • Unsupervised pattern discovery in human chromatin structure through genomic segmentation
    • Hoffman MM, Buske OJ, Wang J, Weng Z, Bilmes JA, Noble WS. 2012. Unsupervised pattern discovery in human chromatin structure through genomic segmentation. Nat Methods 9:473-476.
    • (2012) Nat Methods , vol.9 , pp. 473-476
    • Hoffman, M.M.1    Buske, O.J.2    Wang, J.3    Weng, Z.4    Bilmes, J.A.5    Noble, W.S.6
  • 17
    • 55549118625 scopus 로고    scopus 로고
    • ChromaSig: A probabilistic approach to finding common chromatin signatures in the human genome
    • doi:10.1371/journal.pcbi.1000201
    • Hon G, Ren B, Wang W. 2008. ChromaSig: A probabilistic approach to finding common chromatin signatures in the human genome. PLoS Comput Biol 4: e1000201. doi:10.1371/journal.pcbi.1000201.
    • (2008) PLoS Comput Biol , vol.4
    • Hon, G.1    Ren, B.2    Wang, W.3
  • 18
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DA, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4:44-57.
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang, D.A.1    Sherman, B.T.2    Lempicki, R.A.3
  • 19
    • 75949114262 scopus 로고    scopus 로고
    • W-ChIPMotifs: A web application tool for de novo motif discovery from ChIP-based high-throughput data
    • Jin VX, Apostolos J, Nagisetty NS, Farnham PJ. 2009. W-ChIPMotifs: A web application tool for de novo motif discovery from ChIP-based high-throughput data. Bioinformatics 25:3191-3193.
    • (2009) Bioinformatics , vol.25 , pp. 3191-3193
    • Jin, V.X.1    Apostolos, J.2    Nagisetty, N.S.3    Farnham, P.J.4
  • 22
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 27
    • 77954758157 scopus 로고    scopus 로고
    • Polycomb group protein-mediated repression of transcription
    • Morey L, Helin K. 2010. Polycomb group protein-mediated repression of transcription. Trends Biochem Sci 35:323-332.
    • (2010) Trends Biochem Sci , vol.35 , pp. 323-332
    • Morey, L.1    Helin, K.2
  • 29
    • 7544224445 scopus 로고    scopus 로고
    • YY1 DNA binding and PcG recruitment requires CtBP
    • Srinivasan L, Atchison ML. 2004. YY1 DNA binding and PcG recruitment requires CtBP. Genes Dev 18:2596-2601.
    • (2004) Genes Dev , vol.18 , pp. 2596-2601
    • Srinivasan, L.1    Atchison, M.L.2
  • 31
    • 78650613168 scopus 로고    scopus 로고
    • Binding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2)
    • Xu C, Bian C, Yang W, Galka M, Ouyang H, Chen C, Qiu W, Liu H, Jones AE, MacKenzie F, et al. 2010. Binding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2). Proc Natl Acad Sci 107:19266-19271.
    • (2010) Proc Natl Acad Sci , vol.107 , pp. 19266-19271
    • Xu, C.1    Bian, C.2    Yang, W.3    Galka, M.4    Ouyang, H.5    Chen, C.6    Qiu, W.7    Liu, H.8    Jones, A.E.9    MacKenzie, F.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.