메뉴 건너뛰기




Volumn 78, Issue 19, 2012, Pages 6963-6974

Stability of a pseudomonas putida KT2440 bacteriophage-carried genomic island and its impact on rhizosphere fitness

Author keywords

[No Author keywords available]

Indexed keywords

ARSENATE REDUCTASE; BACTERIAL CHROMOSOMES; BACTERIAL POPULATION; CORN PLANT; DIRECT REPEAT SEQUENCES; DNA REARRANGEMENTS; EXPRESSION LEVELS; GENOMIC ISLANDS; HIGH FREQUENCY; INTRASPECIFIC COMPETITION; MOBILE ELEMENTS; MULTIPLEX PCR; OPEN READING FRAME; PROMOTER SEQUENCES; PSEUDOMONAS PUTIDA; SPECIFIC LOCATION;

EID: 84868326540     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00901-12     Document Type: Article
Times cited : (13)

References (72)
  • 1
    • 62449323971 scopus 로고    scopus 로고
    • Basic phage electron microscopy
    • Ackermann HW. 2009. Basic phage electron microscopy. Methods Mol. Biol. 501:113-126.
    • (2009) Methods Mol. Biol. , vol.501 , pp. 113-126
    • Ackermann, H.W.1
  • 2
    • 0019996193 scopus 로고
    • On the formation of spontaneous deletions: the importance of short sequence homologies in the generation of large deletions
    • Albertini AM, Hofer M, Calos MP, Miller JH. 1982. On the formation of spontaneous deletions: the importance of short sequence homologies in the generation of large deletions. Cell 29:319-328.
    • (1982) Cell , vol.29 , pp. 319-328
    • Albertini, A.M.1    Hofer, M.2    Calos, M.P.3    Miller, J.H.4
  • 3
    • 0033781854 scopus 로고    scopus 로고
    • Seasonal population dynamics and interactions of competing bacteriophages and their host in the rhizosphere
    • Ashelford KE, Norris SJ, Fry JC, Bailey MJ, Day MJ. 2000. Seasonal population dynamics and interactions of competing bacteriophages and their host in the rhizosphere. Appl. Environ. Microbiol. 66:4193-4199.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4193-4199
    • Ashelford, K.E.1    Norris, S.J.2    Fry, J.C.3    Bailey, M.J.4    Day, M.J.5
  • 4
    • 0025740394 scopus 로고
    • Multiple effects of Fis on integration and the control of lysogeny in phage lambda
    • Ball CA, Johnson RC. 1991. Multiple effects of Fis on integration and the control of lysogeny in phage lambda. J. Bacteriol. 173:4032-4038.
    • (1991) J. Bacteriol. , vol.173 , pp. 4032-4038
    • Ball, C.A.1    Johnson, R.C.2
  • 5
    • 0345827436 scopus 로고    scopus 로고
    • SOS response promotes horizontal dissemination of antibiotic resistance genes
    • Beaber JW, Hochhut B, Waldor MK. 2004. SOS response promotes horizontal dissemination of antibiotic resistance genes. Nature 427:72-74.
    • (2004) Nature , vol.427 , pp. 72-74
    • Beaber, J.W.1    Hochhut, B.2    Waldor, M.K.3
  • 6
    • 4544321685 scopus 로고    scopus 로고
    • Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion
    • Brüssow H, Canchaya C, Hardt WD. 2004. Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol. Mol. Biol. Rev. 68:560-602.
    • (2004) Microbiol. Mol. Biol. Rev. , vol.68 , pp. 560-602
    • Brüssow, H.1    Canchaya, C.2    Hardt, W.D.3
  • 7
    • 0035153828 scopus 로고    scopus 로고
    • Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages
    • Brüssow H, Desiere F. 2001. Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages. Mol. Microbiol. 39: 213-222.
    • (2001) Mol. Microbiol. , vol.39 , pp. 213-222
    • Brüssow, H.1    Desiere, F.2
  • 8
    • 77954374364 scopus 로고    scopus 로고
    • The Pseudomonas aeruginosa pathogenicity island PAPI-1 is transferred via a novel type IV pilus
    • Carter MQ, Chen J, Lory S. 2010. The Pseudomonas aeruginosa pathogenicity island PAPI-1 is transferred via a novel type IV pilus. J. Bacteriol. 192:3249-3258.
    • (2010) J. Bacteriol. , vol.192 , pp. 3249-3258
    • Carter, M.Q.1    Chen, J.2    Lory, S.3
  • 9
    • 0037825641 scopus 로고    scopus 로고
    • Prophages and bacterial genomics: what have we learned so far Mol
    • Casjens S. 2003. Prophages and bacterial genomics: what have we learned so far? Mol. Microbiol. 49:277-300.
    • (2003) Microbiol , vol.49 , pp. 277-300
    • Casjens, S.1
  • 10
    • 22744452053 scopus 로고    scopus 로고
    • Population fitness and the regulation of Escherichia coli genes by bacterial viruses
    • doi: 10.1371/journal.pbio.0030229
    • Chen Y, Golding I, Sawai S, Guo L, Cox EC. 2005. Population fitness and the regulation of Escherichia coli genes by bacterial viruses. PLoS Biol. 3:e229. doi:10.1371/journal.pbio.0030229.
    • (2005) PLoS Biol , vol.3
    • Chen, Y.1    Golding, I.2    Sawai, S.3    Guo, L.4    Cox, E.C.5
  • 11
    • 0036724215 scopus 로고    scopus 로고
    • Interactions between integrase and excisionase in the phage lambda excisive nucleoprotein complex
    • Cho EH, Gumport RI, Gardner JF. 2002. Interactions between integrase and excisionase in the phage lambda excisive nucleoprotein complex. J. Bacteriol. 184:5200-5203.
    • (2002) J. Bacteriol. , vol.184 , pp. 5200-5203
    • Cho, E.H.1    Gumport, R.I.2    Gardner, J.F.3
  • 13
    • 0032499721 scopus 로고    scopus 로고
    • A site-specific recombinase is required for competitive root colonization by Pseudomonas fluorescens WCS365
    • Dekkers LC, Phoelich CC, van der Fits L, Lugtenberg BJJ. 1998. A site-specific recombinase is required for competitive root colonization by Pseudomonas fluorescens WCS365. Proc. Natl. Acad. Sci. U. S. A. 95:7051-7056.
    • (1998) Proc. Natl. Acad. Sci. U. S. A. , vol.95 , pp. 7051-7056
    • Dekkers, L.C.1    Phoelich, C.C.2    van der Fits, L.3    Lugtenberg, B.J.J.4
  • 14
    • 0031770094 scopus 로고    scopus 로고
    • Improved antibiotic-resistance cassettes through restriction site elimination using Pfu DNA polymerase PCR
    • Dennis JJ, Zylstra GJ. 1998. Improved antibiotic-resistance cassettes through restriction site elimination using Pfu DNA polymerase PCR. Biotechniques 25:772-776.
    • (1998) Biotechniques , vol.25 , pp. 772-776
    • Dennis, J.J.1    Zylstra, G.J.2
  • 17
    • 7044286190 scopus 로고    scopus 로고
    • Plant-associated Pseudomonas populations: molecular biology, DNA dynamics, and gene transfer
    • Espinosa-Urgel M. 2004. Plant-associated Pseudomonas populations: molecular biology, DNA dynamics, and gene transfer. Plasmid 52:139-150.
    • (2004) Plasmid , vol.52 , pp. 139-150
    • Espinosa-Urgel, M.1
  • 18
    • 4644221648 scopus 로고    scopus 로고
    • Cell density-dependent gene contributes to efficient seed colonization by Pseudomonas putida KT2440
    • Espinosa-Urgel M, Ramos JL. 2004. Cell density-dependent gene contributes to efficient seed colonization by Pseudomonas putida KT2440. Appl. Environ. Microbiol. 70:5190-5198.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5190-5198
    • Espinosa-Urgel, M.1    Ramos, J.L.2
  • 19
    • 0034005123 scopus 로고    scopus 로고
    • Genetic analysis of functions involved in adhesion of Pseudomonas putida to seeds
    • Espinosa-Urgel M, Salido A, Ramos JL. 2000. Genetic analysis of functions involved in adhesion of Pseudomonas putida to seeds. J. Bacteriol. 182:2363-2369.
    • (2000) J. Bacteriol. , vol.182 , pp. 2363-2369
    • Espinosa-Urgel, M.1    Salido, A.2    Ramos, J.L.3
  • 20
    • 80053384106 scopus 로고    scopus 로고
    • The Pseudomonas aeruginosa quinolone quorum sensing signal alters the multicellular behaviour of Pseudomonas putida KT2440
    • Fernández-Piñar R, Cámara M, Dubern JF, Ramos JL, Espinosa-Urgel M. 2011. The Pseudomonas aeruginosa quinolone quorum sensing signal alters the multicellular behaviour of Pseudomonas putida KT2440. Res. Microbiol. 162:773-781.
    • (2011) Res. Microbiol. , vol.162 , pp. 773-781
    • Fernández-Piñar, R.1    Cámara, M.2    Dubern, J.F.3    Ramos, J.L.4    Espinosa-Urgel, M.5
  • 21
    • 0033616769 scopus 로고    scopus 로고
    • Evolution of microbial diversity during prolonged starvation
    • Finkel SE, Kolter R. 1999. Evolution of microbial diversity during prolonged starvation. Proc. Natl. Acad. Sci. U. S. A. 96:4023-4027.
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 4023-4027
    • Finkel, S.E.1    Kolter, R.2
  • 22
    • 14544295852 scopus 로고    scopus 로고
    • Host gene expression changes and DNA amplification during temperate phage induction
    • Frye JG, Porwollik S, Blackmer F, Cheng P, McClelland M. 2005. Host gene expression changes and DNA amplification during temperate phage induction. J. Bacteriol. 187:1485-1492.
    • (2005) J. Bacteriol. , vol.187 , pp. 1485-1492
    • Frye, J.G.1    Porwollik, S.2    Blackmer, F.3    Cheng, P.4    McClelland, M.5
  • 23
    • 0018206086 scopus 로고
    • Regional replication of the bacterial chromosome induced by derepression of prophage lambda. IV. Escape synthesis of gal operon in phage 82
    • Fukasawa T, Hirai K, Segawa T, Obonai K. 1978. Regional replication of the bacterial chromosome induced by derepression of prophage lambda. IV. Escape synthesis of gal operon in phage 82. Mol. Gen. Genet. 167:83-93.
    • (1978) Mol. Gen. Genet. , vol.167 , pp. 83-93
    • Fukasawa, T.1    Hirai, K.2    Segawa, T.3    Obonai, K.4
  • 24
    • 2942571207 scopus 로고    scopus 로고
    • Extensive genomic diversity in pathogenic Escherichia coli and Shigella strains revealed by comparative genomic hybridization microarray
    • Fukiya S, Mizoguchi H, Tobe T, Mori H. 2004. Extensive genomic diversity in pathogenic Escherichia coli and Shigella strains revealed by comparative genomic hybridization microarray. J. Bacteriol. 186:3911-3921.
    • (2004) J. Bacteriol. , vol.186 , pp. 3911-3921
    • Fukiya, S.1    Mizoguchi, H.2    Tobe, T.3    Mori, H.4
  • 25
    • 0030901705 scopus 로고    scopus 로고
    • Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution
    • Hacker J, Blum-Oehler G, Muhldorfer I, Tschape H. 1997. Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution. Mol. Microbiol. 23:1089-1097.
    • (1997) Mol. Microbiol. , vol.23 , pp. 1089-1097
    • Hacker, J.1    Blum-Oehler, G.2    Muhldorfer, I.3    Tschape, H.4
  • 26
    • 0034980876 scopus 로고    scopus 로고
    • Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes
    • Hacker J, Carniel E. 2001. Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes. EMBO Rep. 2:376-381.
    • (2001) EMBO Rep , vol.2 , pp. 376-381
    • Hacker, J.1    Carniel, E.2
  • 27
    • 0033758756 scopus 로고    scopus 로고
    • Pathogenicity islands and the evolution of microbes
    • Hacker J, Kaper JB. 2000. Pathogenicity islands and the evolution of microbes. Annu. Rev. Microbiol. 54:641-679.
    • (2000) Annu. Rev. Microbiol. , vol.54 , pp. 641-679
    • Hacker, J.1    Kaper, J.B.2
  • 29
    • 0025047590 scopus 로고
    • Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in Gram-negative bacteria
    • Herrero M, de Lorenzo V, Timmis KN. 1990. Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in Gram-negative bacteria. J. Bacteriol. 172:6557-6567.
    • (1990) J. Bacteriol. , vol.172 , pp. 6557-6567
    • Herrero, M.1    De Lorenzo, V.2    Timmis, K.N.3
  • 30
    • 0028164235 scopus 로고
    • Population dynamics of phage-host interactions and phage conversion of streptomycetes in soil
    • Herron PR, Wellington EMH. 1994. Population dynamics of phage-host interactions and phage conversion of streptomycetes in soil. FEMS Microbiol. Ecol. 14:25-32.
    • (1994) FEMS Microbiol. Ecol. , vol.14 , pp. 25-32
    • Herron, P.R.1    Wellington, E.M.H.2
  • 31
    • 0027972149 scopus 로고
    • The sss gene product, which affects pyoverdin production in Pseudomonas aeruginosa 7NSK2, is a site-specific recombinase
    • Höfte M, et al. 1994. The sss gene product, which affects pyoverdin production in Pseudomonas aeruginosa 7NSK2, is a site-specific recombinase. Mol. Microbiol. 14:1011-1020.
    • (1994) Mol. Microbiol. , vol.14 , pp. 1011-1020
    • Höfte, M.1
  • 32
    • 0028266653 scopus 로고
    • Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli
    • Kirby JE, Trempy JE, Gottesman S. 1994. Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli. J. Bacteriol. 176:2068-2081.
    • (1994) J. Bacteriol. , vol.176 , pp. 2068-2081
    • Kirby, J.E.1    Trempy, J.E.2    Gottesman, S.3
  • 33
    • 0035004274 scopus 로고    scopus 로고
    • A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of clonedDNAinto Gramnegative bacteria at a neutral chromosomal site
    • Koch B, Jensen LE, Nybroe O. 2001. A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of clonedDNAinto Gramnegative bacteria at a neutral chromosomal site. J. Microbiol. Methods 45:187-195.
    • (2001) J. Microbiol. Methods , vol.45 , pp. 187-195
    • Koch, B.1    Jensen, L.E.2    Nybroe, O.3
  • 34
    • 0034788893 scopus 로고    scopus 로고
    • Selection of a plantbacterium pair as a novel tool for rhizostimulation of polycyclic aromatic hydrocarbon-(PAH)-degrading bacteria
    • Kuiper I, Bloemberg GV, Lugtenberg BJJ. 2001. Selection of a plantbacterium pair as a novel tool for rhizostimulation of polycyclic aromatic hydrocarbon-(PAH)-degrading bacteria. Mol. Plant Microbe Interact. 14: 1197-1205.
    • (2001) Mol. Plant Microbe Interact. , vol.14 , pp. 1197-1205
    • Kuiper, I.1    Bloemberg, G.V.2    Lugtenberg, B.J.J.3
  • 35
    • 61449201423 scopus 로고    scopus 로고
    • IslandViewer: an integrated interface for computational identification and visualization of genomic islands
    • Langille MGI, Brinkman FSL. 2009. IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 25:664-665.
    • (2009) Bioinformatics , vol.25 , pp. 664-665
    • Langille, M.G.I.1    Brinkman, F.S.L.2
  • 37
    • 0030994798 scopus 로고    scopus 로고
    • Amelioration of bacterial genomes: rates of change and exchange
    • Lawrence JG, Ochman H. 1997. Amelioration of bacterial genomes: rates of change and exchange. J. Mol. Evol. 44:383-397.
    • (1997) J. Mol. Evol. , vol.44 , pp. 383-397
    • Lawrence, J.G.1    Ochman, H.2
  • 38
    • 75549086985 scopus 로고    scopus 로고
    • ACLAME: a classification of mobile genetic elements, update 2010
    • Leplae R, Lima-Mendez G, Toussaint A. 2010. ACLAME: a classification of mobile genetic elements, update 2010. Nucleic Acids Res. 38:D57-D61.
    • (2010) Nucleic Acids Res , vol.38
    • Leplae, R.1    Lima-Mendez, G.2    Toussaint, A.3
  • 39
    • 0021613767 scopus 로고
    • A repetitive DNA sequence rhs responsible for duplications within the Escherichia coli K-12 chromosome
    • Lin RJ, Capage M, Hill CW. 1984. A repetitive DNA sequence rhs responsible for duplications within the Escherichia coli K-12 chromosome. J. Mol. Biol. 177:1-18.
    • (1984) J. Mol. Biol. , vol.177 , pp. 1-18
    • Lin, R.J.1    Capage, M.2    Hill, C.W.3
  • 40
    • 0347756648 scopus 로고    scopus 로고
    • Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities
    • Mantri Y, Williams KP. 2004. Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities. Nucleic Acids Res. 32:D55-D58.
    • (2004) Nucleic Acids Res , vol.32
    • Mantri, Y.1    Williams, K.P.2
  • 41
    • 79951604920 scopus 로고    scopus 로고
    • Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1
    • Matilla MA, et al. 2011. Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1. J. Bacteriol. 193:1290.
    • (2011) J. Bacteriol. , vol.193 , pp. 1290
    • Matilla, M.A.1
  • 42
    • 83855165692 scopus 로고    scopus 로고
    • Extreme genome reduction in symbiotic bacteria
    • McCutcheon JP, Moran NA. 2012. Extreme genome reduction in symbiotic bacteria. Nat. Rev. Microbiol. 10:13-26.
    • (2012) Nat. Rev. Microbiol. , vol.10 , pp. 13-26
    • McCutcheon, J.P.1    Moran, N.A.2
  • 43
    • 0035479142 scopus 로고    scopus 로고
    • Deletional bias and the evolution of bacterial genomes
    • Mira A, Ochman H, Moran NA. 2001. Deletional bias and the evolution of bacterial genomes. Trends Genet. 17:589-596.
    • (2001) Trends Genet , vol.17 , pp. 589-596
    • Mira, A.1    Ochman, H.2    Moran, N.A.3
  • 44
    • 3042849253 scopus 로고    scopus 로고
    • Biased biological functions of horizontally transferred genes in prokaryotic genomes
    • Nakamura Y, Itoh T, Matsuda H, Gojobori T. 2004. Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nat. Genet. 36:760-766.
    • (2004) Nat. Genet. , vol.36 , pp. 760-766
    • Nakamura, Y.1    Itoh, T.2    Matsuda, H.3    Gojobori, T.4
  • 45
    • 0036933237 scopus 로고    scopus 로고
    • Travels of a Pseudomonas, from Japan around the world
    • Nakazawa T. 2002. Travels of a Pseudomonas, from Japan around the world. Environ. Microbiol. 4:782-786.
    • (2002) Environ. Microbiol. , vol.4 , pp. 782-786
    • Nakazawa, T.1
  • 46
    • 0036933705 scopus 로고    scopus 로고
    • Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
    • Nelson KE, et al. 2002. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol. 4:799-808.
    • (2002) Environ. Microbiol. , vol.4 , pp. 799-808
    • Nelson, K.E.1
  • 47
    • 37349086141 scopus 로고    scopus 로고
    • Global analysis of host response to induction of a latent bacteriophage
    • doi: 10.1186/1471-2180-7-82
    • Osterhout RE, Figueroa IA, Keasling JD, Arkin AP. 2007. Global analysis of host response to induction of a latent bacteriophage. BMC Microbiol. 7:82. doi:10.1186/1471-2180-7-82.
    • (2007) BMC Microbiol , vol.7 , pp. 82
    • Osterhout, R.E.1    Figueroa, I.A.2    Keasling, J.D.3    Arkin, A.P.4
  • 49
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • doi: 10.1093/nar/29.9.e45
    • Pfaffl MW. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29:e45. doi:10.1093/nar/29.9.e45.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 50
    • 33845924185 scopus 로고    scopus 로고
    • Interstrain transfer of the large pathogenicity island (PAPI-1) of Pseudomonas aeruginosa
    • Qiu X, Gurkar AU, Lory S. 2006. Interstrain transfer of the large pathogenicity island (PAPI-1) of Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. U. S. A. 103:19830-19835.
    • (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 19830-19835
    • Qiu, X.1    Gurkar, A.U.2    Lory, S.3
  • 51
    • 33644905904 scopus 로고    scopus 로고
    • Characterization of the Pseudomonas putida mobile genetic element ISPpu10: an occupant of repetitive extragenic palindromic sequences
    • Ramos-González MI, Campos MJ, Ramos JL, Espinosa-Urgel M. 2006. Characterization of the Pseudomonas putida mobile genetic element ISPpu10: an occupant of repetitive extragenic palindromic sequences. J. Bacteriol. 188:37-44.
    • (2006) J. Bacteriol. , vol.188 , pp. 37-44
    • Ramos-González, M.I.1    Campos, M.J.2    Ramos, J.L.3    Espinosa-Urgel, M.4
  • 52
    • 33750015243 scopus 로고    scopus 로고
    • Excision and transfer of the Mesorhizobium loti R7A symbiosis island requires an integrase IntS, a novel recombination directionality factor RdfS, and a putative relaxase RlxS
    • Ramsay JP, Sullivan JT, Stuart GS, Lamont IL, Ronson CW. 2006. Excision and transfer of the Mesorhizobium loti R7A symbiosis island requires an integrase IntS, a novel recombination directionality factor RdfS, and a putative relaxase RlxS. Mol. Microbiol. 62:723-734.
    • (2006) Mol. Microbiol. , vol.62 , pp. 723-734
    • Ramsay, J.P.1    Sullivan, J.T.2    Stuart, G.S.3    Lamont, I.L.4    Ronson, C.W.5
  • 53
    • 0031751325 scopus 로고    scopus 로고
    • Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida 1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13
    • Ravatn R, Studer S, Springael D, Zehnder AJ, vander Meer JR. 1998. Chromosomal integration, tandem amplification, and deamplification in Pseudomonas putida 1 of a 105-kilobase genetic element containing the chlorocatechol degradative genes from Pseudomonas sp. strain B13. J. Bacteriol. 180:4360-4369.
    • (1998) J. Bacteriol. , vol.180 , pp. 4360-4369
    • Ravatn, R.1    Studer, S.2    Springael, D.3    Zehnder, A.J.4    vander Meer, J.R.5
  • 54
    • 0031745938 scopus 로고    scopus 로고
    • Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms
    • Ravatn R, Zehnder AJ, van der Meer JR. 1998. Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms. Appl. Environ. Microbiol. 64:2126-2132.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2126-2132
    • Ravatn, R.1    Zehnder, A.J.2    Van der Meer, J.R.3
  • 55
    • 0036937473 scopus 로고    scopus 로고
    • Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440
    • Regenhardt D, et al. 2002. Pedigree and taxonomic credentials of Pseudomonas putida strain KT2440. Environ. Microbiol. 4:912-915.
    • (2002) Environ. Microbiol. , vol.4 , pp. 912-915
    • Regenhardt, D.1
  • 56
    • 80052032329 scopus 로고    scopus 로고
    • A quantitative account of genomic island acquisitions in prokaryotes
    • doi: 10.1186/1471-2164-12-427
    • Roos TE, van Passel MW. 2011. A quantitative account of genomic island acquisitions in prokaryotes. BMC Genomics 12:427. doi:10.1186/1471-2164-12-427.
    • (2011) BMC Genomics , vol.12 , pp. 427
    • Roos, T.E.1    van Passel, M.W.2
  • 57
    • 0036928819 scopus 로고    scopus 로고
    • Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein
    • Sam MD, et al. 2002. Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein. J. Mol. Biol. 324:791-805.
    • (2002) J. Mol. Biol. , vol.324 , pp. 791-805
    • Sam, M.D.1
  • 59
    • 0036189505 scopus 로고    scopus 로고
    • Phenotypic selection and phase variation occur during alfalfa root colonization by Pseudomonas fluorescens F113
    • Sánchez-Contreras M, et al. 2002. Phenotypic selection and phase variation occur during alfalfa root colonization by Pseudomonas fluorescens F113. J. Bacteriol. 184:1587-1596.
    • (2002) J. Bacteriol. , vol.184 , pp. 1587-1596
    • Sánchez-Contreras, M.1
  • 60
    • 67650072870 scopus 로고    scopus 로고
    • An engineered R-type pyocin is a highly specific and sensitive bactericidal agent for the food-borne pathogen Escherichia coli O157: H7
    • Scholl D, et al. 2009. An engineered R-type pyocin is a highly specific and sensitive bactericidal agent for the food-borne pathogen Escherichia coli O157:H7. Antimicrob. Agents Chemother. 53:3074-3080.
    • (2009) Antimicrob. Agents Chemother. , vol.53 , pp. 3074-3080
    • Scholl, D.1
  • 61
    • 0038782123 scopus 로고    scopus 로고
    • Unusual integrase gene expression on the clc genomic island of Pseudomonas sp. strain B13
    • Sentchilo VS, Ravatn R, Werlen C, Zehnder AJB, van der Meer JR. 2003. Unusual integrase gene expression on the clc genomic island of Pseudomonas sp. strain B13. J. Bacteriol. 185:4530-4538.
    • (2003) J. Bacteriol. , vol.185 , pp. 4530-4538
    • Sentchilo, V.S.1    Ravatn, R.2    Werlen, C.3    Zehnder, A.J.B.4    Van der Meer, J.R.5
  • 62
    • 77954265673 scopus 로고    scopus 로고
    • mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes
    • Shao Y, et al. 2010. mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes. Nucleic Acids Res. 38:W194-W200.
    • (2010) Nucleic Acids Res , vol.38
    • Shao, Y.1
  • 63
    • 33745129040 scopus 로고    scopus 로고
    • The Bacillus anthracis chromosome contains four conserved, excision-proficient, putative prophages
    • doi: 10.1186/1471-2180-6-34
    • Sozhamannan S, et al. 2006. The Bacillus anthracis chromosome contains four conserved, excision-proficient, putative prophages. BMC Microbiol. 6:34. doi:10.1186/1471-2180-6-34.
    • (2006) BMC Microbiol , vol.6 , pp. 34
    • Sozhamannan, S.1
  • 64
    • 83255174847 scopus 로고    scopus 로고
    • Genome sequence of Pseudomonas putida strain B6-2, a superdegrader of polycyclic aromatic hydrocarbons and dioxin-like compounds
    • Tang H, et al. 2011. Genome sequence of Pseudomonas putida strain B6-2, a superdegrader of polycyclic aromatic hydrocarbons and dioxin-like compounds. J. Bacteriol. 193:6789-6790.
    • (2011) J. Bacteriol. , vol.193 , pp. 6789-6790
    • Tang, H.1
  • 65
    • 39049169705 scopus 로고    scopus 로고
    • Resolving the structural features of genomic islands: a machine learning approach
    • Vernikos GS, Parkhill J. 2008. Resolving the structural features of genomic islands: a machine learning approach. Genome Res. 18:331-342.
    • (2008) Genome Res , vol.18 , pp. 331-342
    • Vernikos, G.S.1    Parkhill, J.2
  • 66
    • 70349451496 scopus 로고    scopus 로고
    • Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms
    • Wang X, Kim Y, Wood TK. 2009. Control and benefits of CP4-57 prophage excision in Escherichia coli biofilms. ISME J. 3:1164-1179.
    • (2009) ISME J , vol.3 , pp. 1164-1179
    • Wang, X.1    Kim, Y.2    Wood, T.K.3
  • 67
    • 0036937356 scopus 로고    scopus 로고
    • Global features of the Pseudomonas putida KT2440 genome sequence
    • Weinel C, Nelson KE, Tümmler B. 2002. Global features of the Pseudomonas putida KT2440 genome sequence. Environ. Microbiol. 4:809-818.
    • (2002) Environ. Microbiol. , vol.4 , pp. 809-818
    • Weinel, C.1    Nelson, K.E.2    Tümmler, B.3
  • 68
    • 0014432632 scopus 로고
    • Role of bacteriophage DNA replication in lambda-dg escape synthesis
    • Willard M, Echols H. 1968. Role of bacteriophage DNA replication in lambda-dg escape synthesis. J. Mol. Biol. 32:37-46.
    • (1968) J. Mol. Biol. , vol.32 , pp. 37-46
    • Willard, M.1    Echols, H.2
  • 69
    • 61449134105 scopus 로고    scopus 로고
    • Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool epidemic strain of Pseudomonas aeruginosa
    • Winstanley C, et al. 2009. Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool epidemic strain of Pseudomonas aeruginosa. Genome Res. 19:12-23.
    • (2009) Genome Res , vol.19 , pp. 12-23
    • Winstanley, C.1
  • 70
    • 79251593648 scopus 로고    scopus 로고
    • Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida
    • Wu X, et al. 2011. Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida. FEMS Microbiol. Rev. 35:299-323.
    • (2011) FEMS Microbiol. Rev. , vol.35 , pp. 299-323
    • Wu, X.1
  • 71
    • 52649091370 scopus 로고    scopus 로고
    • Different, overlapping mechanisms for colonization of abiotic and plant surfaces by Pseudomonas putida
    • Yousef-Coronado F, Travieso ML, Espinosa-Urgel M. 2008. Different, overlapping mechanisms for colonization of abiotic and plant surfaces by Pseudomonas putida. FEMS Microbiol. Lett. 288:118-124.
    • (2008) FEMS Microbiol. Lett. , vol.288 , pp. 118-124
    • Yousef-Coronado, F.1    Travieso, M.L.2    Espinosa-Urgel, M.3
  • 72
    • 80053604142 scopus 로고    scopus 로고
    • Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16
    • Yu H, et al. 2011. Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16. J. Bacteriol. 193:5541-5542.
    • (2011) J. Bacteriol. , vol.193 , pp. 5541-5542
    • Yu, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.