Genome sequence of Pseudomonas putida strain B6-2, a superdegrader of polycyclic aromatic hydrocarbons and dioxin-like compounds

Journal of Bacteriology

Volumn 193, Issue 23, 2011, Pages 6789-6790

  Tang, Hongzhi ^a   Yu, Hao ^a   Li, Qinggang ^b,c   Wang, Xiaoyu ^a   Gai, Zhonghui ^a   Yin, Guangbo ^c   Su, Fei ^a   Tao, Fei ^a   Ma, Cuiqing ^c   Xu, Ping ^a  

^a Shanghai Jiao Tong University   (China)

^b Chinese Academy of Sciences   (China)

^c SHANDONG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

4 HYDROXYBENZOIC ACID; BENZOIC ACID; CATECHOL; DIOXIN; POLYCYCLIC AROMATIC HYDROCARBON; RNA; RNA 5S; SALICYLIC ACID; TRANSFER RNA;

BACTERIAL GENE; BACTERIAL STRAIN; BIODEGRADATION; GENE CLUSTER; GENE SEQUENCE; NONHUMAN; NOTE; OPERON; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PSEUDOMONAS PUTIDA; SIGNAL TRANSDUCTION; ARTICLE; BACTERIAL GENOME; BIOREMEDIATION; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

PSEUDOMONAS PUTIDA;

BASE SEQUENCE; BIODEGRADATION, ENVIRONMENTAL; DIOXINS; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; POLYCYCLIC HYDROCARBONS, AROMATIC; PSEUDOMONAS PUTIDA;

EID: 83255174847     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.06201-11     Document Type: Note

References (16)

1. Aziz, R. K., et al. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75.
2. Gan, S., E. V. Lau, and H. K. Ng. 2009. Remediation of soils contaminated with polycyclic aromatic hydrocarbons (PAHs). J. Hazard. Mater. 172:532-549.
3. Habe, H., and T. Omori. 2003. Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria. Biosci. Biotechnol. Biochem. 67:225-243.
4. Inoue, A., and K. Horikoshi. 1989. A Pseudomonas thrives in high concentrations of toluene. Nature 338:264-266.
5. Kanehisa, M., and S. Goto. 2000. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28:27-30.
6. Li, Q., et al. 2009. New metabolites in dibenzofuran cometabolic degradation by a biphenyl-cultivated Pseudomonas putida strain B6-2. Environ. Sci. Technol. 43:8635-8642.
7. Margesin, R., and F. Schinner. 2001. Biodegradation and bioremediation of hydrocarbons in extreme environments. Appl. Microbiol. Biotechnol. 56: 650-663.
8. Mumtaz, M., and J. George. 1995. Toxicological profile for polycyclic aromatic hydrocarbons. Agency for Toxic Substances and Disease Registry, Atlanta, GA.
9. Peng, R. H., et al. 2008. Microbial biodegradation of polyaromatic hydrocarbons. FEMS Microbiol. Rev. 32:927-955.
10. Sardessai, Y. N., and S. Bhosle. 2004. Industrial potential of organic solvent tolerant bacteria. Biotechnol. Prog. 20:655-660.
11. Timmis, K. N. 2002. Pseudomonas putida: a cosmopolitan opportunist par excellence. Environ. Microbiol. 4:779-781.
12. U.S. Environmental Protection Agency. 2008. Polycyclic aromatic hydrocarbons (PAHs). http://www.epa.gov/osw/hazard/wastemin/minimize/factshts /pahs.pdf.
13. Wu, X., et al. 2011. Comparative genomics and functional analysis of nichespecific adaptation in Pseudomonas putida. FEMS Microbiol. Rev. 35:299-323.
14. Xu, P., B. Yu, F. L. Li, X. F. Cai, and C. Q. Ma. 2006. Microbial degradation of sulfur, nitrogen and oxygen heterocycles. Trends Microbiol. 14:398-405.
15. Yu, H., et al. 2011. Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16. J. Bacteriol. 193:5541-5542.
16. Zerbino, D. R., and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.