Alteribacillus bidgolensis gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Bacillus persepolensis as Alteribacillus persepolensis comb. nov

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 11, 2012, Pages 2691-2697

  Didari, Maryam ^a   Amoozegar, Mohammad Ali ^a,b   Bagheri, Maryam ^a,b   Schumann, Peter ^c   Spröer, Cathrin ^c   Sánchez Porro, Cristina ^d   Ventosa, Antonio ^d  

^a UNIVERSITY OF TEHRAN   (Iran)

^b AVICENNA RESEARCH INSTITUTE   (Iran)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^d UNIVERSITY OF SEVILLE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

PHOSPHATIDYLGLYCEROL; RNA 16S; SODIUM CHLORIDE; WATER;

ALTERIBACILLUS BIDGOLENSIS; ALTERIBACILLUS PERSEPOLENSIS; ARTICLE; BACILLUS; BACILLUS PERSEPOLENSIS; BACILLUS SALARIUS; BACTERIAL CELL; BACTERIAL ENDOSPORE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIOMASS; DNA CONTENT; DNA DNA HYBRIDIZATION; FIRMICUTES; GENE SEQUENCE; GRAM POSITIVE BACTERIUM; HALOPHILIC BACTERIUM; IRAN; LAKE; NONHUMAN; PH; PHYLUM; PRIORITY JOURNAL; SPORANGIUM; TEMPERATURE;

BACILLUS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; IRAN; LAKES; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PEPTIDOGLYCAN; PHOSPHOLIPIDS; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SALINITY; SEQUENCE ANALYSIS, DNA; WATER MICROBIOLOGY;

BACILLUS (BACTERIUM); BACILLUS SALARIUS; BACILLUS SUBTILIS SUBSP. SUBTILIS; BACTERIA (MICROORGANISMS); FIRMICUTES;

EID: 84868326150     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.034173-0     Document Type: Article

References (41)

1. Amoozegar, M. A., Salehghamari, E., Khajeh, K., Kabiri, M. & Naddaf, S. (2008). Production of an extracellular thermohalophilic lipase from a moderately halophilic bacterium, Salinivibrio sp. strain SA-2. J Basic Microbiol 48, 160-167.
2. Amoozegar, M. A., Sánchez-Porro, C., Rohban, R., Hajighasemi, M. & Ventosa, A. (2009). Bacillus persepolensis sp. nov., a moderately halophilic bacterium from a hypersaline lake. Int J Syst Evol Microbiol 59, 2352-2358.
3. Arahal, D. R. & Ventosa, A. (2002). Moderately halophilic and halotolerant species of Bacillus and related genera. In Applications and Systematics of Bacillus and Relatives, pp. 83-99. Edited by R. Berkeley, M. Heyndrickx, N. Logan & P. De Vos. Oxford: Blackwell.
4. Baron, E. J. & Finegold, S. M. (1990). Bailey and Scott's Diagnostic Microbiology, 8th edn. St Louis: Mosby.
5. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
6. de la Haba, R. R., Sánchez-Porro, C., Márquez, M. C. & Ventosa, A. (2011). Taxonomy of halophiles. In Extremophiles Handbook, pp. 255-308. Edited by K. Horikoshi. Tokyo: Springer.
7. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
8. Embley, T. M. & Wait, R. (1994). Structural lipids of Eubacteria. In Chemical Methods in Prokaryotic Systematics, pp. 121-161. Edited by M. Goodfellow & A. G. O'Donnell. New York: Wiley.
9. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
10. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
11. Harrigan, W. F. & McCance, M. E. (1976). Laboratory Methods in Food and Dairy Microbiology. London: Academic Press.
12. Heyrman, J., Vanparys, B., Logan, N. A., Balcaen, A., Rodríguez-Díaz, M., Felske, A. & De Vos, P. (2004). Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands. Int J Syst Evol Microbiol 54, 47-57.
13. Heyrman, J., Rodríguez-Díaz, M., Devos, J., Felske, A., Logan, N. A. & De Vos, P. (2005). Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil. Int J Syst Evol Microbiol 55, 111-117.
14. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
15. Karbalaei-Heidari, H. R., Amoozegar, M. A., Hajighasemi, M., Ziaee, A. A. & Ventosa, A. (2009). Production, optimization and purification of a novel extracellular protease from the moderately halophilic bacterium Halobacillus karajensis. J Ind Microbiol Biotechnol 36, 21-27.
16. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H., Yi, H., Won, S. & Chun, J. (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
17. Lim, J.-M., Jeon, C. O. & Kim, C.-J. (2006a). Bacillus taeanensis sp. nov., a halophilic Gram-positive bacterium from a solar saltern in Korea. Int J Syst Evol Microbiol 56, 2903-2908.
18. Lim, J.-M., Jeon, C. O., Lee, J. C., Ju, Y. J., Park, D. J. & Kim, C.-J. (2006b). Bacillus koreensis sp. nov., a spore-forming bacterium, isolated from the rhizosphere of willow roots in Korea. Int J Syst Evol Microbiol 56, 59-63.
19. Lim, J.-M., Jeon, C. O., Lee, S.-M., Lee, J. C., Xu, L. H., Jiang, C. L. & Kim, C. J. (2006c). Bacillus salarius sp. nov., a halophilic, sporeforming bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 56, 373-377.
20. Logan, N. A., Berge, O., Bishop, A. H., Busse, H.-J., De Vos, P., Fritze, D., Heyndrickx, M., Kämpfer, P., Rabinovitch, L. & other authors (2009). Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 59, 2114-2121.
21. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
22. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3, 208-218.
23. Mata, J. A., Martínez-Cánovas, J., Quesada, E. & Béjar, V. (2002). A detailed phenotypic characterisation of the type strains of Halomonas species. Syst Appl Microbiol 25, 360-375.
24. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
25. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
26. Monciardini, P., Cavaletti, L., Schumann, P., Rohde, M. & Donadio, S. (2003). Conexibacter woesei gen. nov., sp. nov., a novel representative of a deep evolutionary line of descent within the class Actinobacteria. Int J Syst Evol Microbiol 53, 569-576.
27. Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
28. Priest, F. G., Goodfellow, M. & Todd, C. (1988). A numerical classification of the genus Bacillus. J Gen Microbiol 134, 1847-1882.
29. Quesada, E., Ventosa, A., Ruiz-Berraquero, F. & Ramos-Cormenzana, A. (1984). Deleya halophila, a new species of moderately halophilic bacteria. Int J Syst Bacteriol 34, 287-292.
30. Rhuland, L. E., Work, E., Denman, R. F. & Hoare, D. S. (1955). The behaviour of the isomers of a, e-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77, 4844-4846.
31. Rohban, R., Amoozegar, M. A. & Ventosa, A. (2009). Screening and isolation of halophilic bacteria producing extracellular hydrolyses from Howz Soltan Lake, Iran. J Ind Microbiol Biotechnol 36, 333-340.
32. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
33. Shafiei, M., Ziaee, A. & Amoozegar, M. A. (2010). Purification and biochemical characterization of a novel SDS and surfactant stable, raw starch digesting, and halophilic a-amylase from a moderately halophilic bacterium, Nesterenkonia sp. strain F. Process Biochem 45, 694-699.
34. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
35. Ventosa, A. (2006). Unusual micro-organisms from unusual habitats: hypersaline environments. In Prokaryotic Diversity: Mechanisms and Significance, pp. 223-254. Edited by N. A. Logan, H. M. Lappin-Scott & P. C. F. Oyston. Cambridge: Cambridge University Press.
36. Ventosa, A., Quesada, E., Rodriguez-Valera, F., Ruiz-Berraquero, F. & Ramos-Cormenzana, A. (1982). Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128, 1959-1968.
37. Ventosa, A., Nieto, J. J. & Oren, A. (1998). Biology of moderately halophilic aerobic bacteria. Microbiol Mol Biol Rev 62, 504-544.
38. Wang, Q. F., Li, W., Liu, Y. L., Cao, H. H., Li, Z. & Guo, G. Q. (2007). Bacillus qingdaonensis sp. nov., a moderately haloalkaliphilic bacterium isolated from a crude sea-salt sample collected near Qingdao in eastern China. Int J Syst Evol Microbiol 57, 1143-1147.
39. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
40. Wieser, M., Worliczek, H., Kämpfer, P. & Busse, H.-J. (2005). Bacillus herbersteinensis sp. nov. Int J Syst Evol Microbiol 55, 2119-2123.
41. Xue, Y., Ventosa, A., Wang, X., Ren, P., Zhou, P. & Ma, Y. (2008). Bacillus aidingensis sp. nov., a moderately halophilic bacterium isolated from Ai-Ding salt lake in China. Int J Syst Evol Microbiol 58, 2828-2832.