Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 1, 2005, Pages 111-117

  Heyrman, Jeroen ^a   Rodríguez Díaz, Marina ^b   Devos, Joke ^a   Felske, Andreas ^c   Logan, Niall A ^b   De Vos, Paul ^a  

^a GHENT UNIVERSITY   (Belgium)

^b GLASGOW CALEDONIAN UNIVERSITY   (United Kingdom)

^c HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ARTICLE; BACILLUS; BACILLUS ARENOSI; BACILLUS ARVI; BACILLUS HUMI; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; FATTY ACID ANALYSIS; NETHERLANDS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOIL ANALYSIS; SPECIES DIFFERENTIATION; SPECIES IDENTIFICATION;

BACILLUS; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; NETHERLANDS; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

BACILLUS ARENOSI; BACILLUS ARVI; BACILLUS CARBONIPHILUS; BACILLUS HUMI; BACILLUS NEIDEI; BACILLUS PYCNUS; BACILLUS SPOROTHERMODURANS; POSIBACTERIA;

EID: 13344250396     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63240-0     Document Type: Article

References (35)

1. Abd El-Rahmanj, H. A., Fritze, D., Spröer, C. & Claus, D. (2002). Two novel psychrotolerant species, Bacillus psychrotolerans sp. nov. and Bacillus psychrodurans sp. nov., which contain ornithine in their cell walls. Int J Syst Evol Microbiol 52, 2127-2133.
2. Ash, C., Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1991). Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13, 202-206.
3. Ash, C., Priest, F. G. & Collins, M. D. (1993). Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks, and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64, 253-260.
4. Belikova, V. A., Cherevach, N. V. & Kalakutskii, L. V. (1986). A new species of bacteria of the genus Kurthia, Kurthia sibirica sp. nov. Mikrobiologiia 55, 831-835 (in Russian).
5. Berkeley, R. C. W. (2002). Whither Bacillus? In Applications and Systematics of Bacillus and Relatives, pp. 1-7. Edited by R. Berkeley, M. Heyndrickx, N. Logan & P. De Vos. Oxford: Blackwell.
6. Claus, D. & Berkeley, R. C. W. (1986). Genus Bacillus. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1139. Edited by P. H. Sneath, N. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
7. Cohn, F. (1872). Untersuchungen über Bakterien. Beitr Biol Pflanz 1, 127-244.
8. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
9. Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1994). Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus. Int J Syst Bacteriol 44, 74-82.
10. Felske, A. & Akkermans, A. D. L. (1998). Spatial homogeneity of abundant bacterial 16S rRNA molecules in grassland soils. Microbiol Ecol 36, 31-36.
11. Felske, A., Wolterink, A., Van Lis, R. & Akkermans, A. D. L. (1998). Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl Environ Microbiol 61, 871-879.
12. Felske, A., Heyrman, J., Balcaen, A. & De Vos, P. (2003). Multiplex PCR screening of soil isolates for novel Bacillus related lineages. J Microbiol Methods 55, 447-458.
13. Gordon, R. E., Haynes, W. C. & Pang, C. H.-N. (1973). The Genus Bacillus. Agricultural Handbook no. 427. Washington, DC: USDA.
14. Goto, K., Omura, T., Hara, Y. & Sadaie, Y. (2000). Application of the partial 16S rDNA sequence as an index for rapid identification of species in the genus Bacillus. J Gen Appl Microbiol 46, 1-8.
15. Heyndrickx, M., Vauterin, L., Vandamme, P., Kersters, K. & De Vos, P. (1996). Applicability of combined amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy. J Microbiol Methods 26, 247-259.
16. Heyndrickx, M., Lebbe, L., Vancanneyt, M. & 7 other authors (1997). A polyphasic reassessment of the genus Aneurinibacillus, reclassification of Bacillus thermoaerophilus (Meier-Stauffer et al. 1996) as Aneurinibacillus thermoaerophilus comb. nov., and emended descriptions of A. aneurinilyticus corrig., A. migulanus, and A. thermoaerophilus. Int J Syst Bacteriol 47, 808-817.
17. Heyrman, J. & Swings, J. (2001). 16S rDNA sequence analysis of bacterial isolates from biodeteriorated mural paintings in the Servilia tomb (necropolis of Carmona, Seville, Spain). Syst Appl Microbiol 24, 417-422.
18. Heyrman, J., Mergaert, J., Denys, R. & Swings, J. (1999). The use of fatty acid methyl ester analysis (FAME) for the identification of heterotrophic bacteria present on three mural paintings showing severe damage by microorganisms. FEMS Microbiol Lett 181 55-62.
19. Heyrman, J., Logan, N. A., Busse, H.-J., Balcaen, A., Lebbe, L., Rodriguez-Diaz, M., Swings, J. & De Vos, P. (2003). Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus Salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus. Int J Syst Evol Microbiol 53, 501-511.
20. Keddie, R. M. & Shaw, S. (1986). Genus Kurthia. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1255-1258. Edited by P. H. Sneath, N. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
21. Logan, N. A. & Berkeley, R. C. W. (1984). Identification of Bacillus strains using the API system. J Gen Microbiol 130, 1871-1882.
22. Logan, N. A., Lebbe, L., Hoste, B. & 7 other authors (2000). Aerobic endospore-forming bacteria from geothermal environments in northern Victoria Land, Antarctica, and Candlemas Island, South Sandwich archipelago, with the proposal of Bacillus fumarioli sp. nov. Int J Syst Evol Microbiol 50, 1741-1753.
23. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39 159-167.
24. Nakamura, L. K., Shida, O., Takagi, H. & Komagata, K. (2002). Bacillus pycnus sp. nov. and Bacillus neidei sp. nov., round-spored bacteria from soil. Int J Syst Evol Microbiol 52, 501-505.
25. Nazina, T. N., Tourova, T. P., Poltaraus, A. B. & 8 other authors (2001). Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int J Syst Evol Microbiol 51, 433-446.
26. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85 2444-2448.
27. Rademaker, J. L. W. & De Bruijn, F. J. (1997). Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer assisted pattern analysis. In DNA Markers: Protocols, Applications and Overviews, pp. 151-171. Edited by G. Gaetano-Anollés & P. M. Gresshoff. New York: Wiley.
28. Rheims, H., Frühling, A., Schumann, P., Rohde, M. & Stackebrandt, E. (1999). Bacillus silvestris sp. nov., a new member of the genus Bacillus that contains lysine in its cell wall. Int J Syst Bacteriol 49, 795-802.
29. Shida, O., Takagi, H., Kadowaki, K. & Komagata, K. (1996). Proposal of two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. Int J Syst Bacteriol 46, 939-946.
30. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
31. Stackebrandt, E., Frederiksen, W., Garrity, G. M. & 10 other authors (2002). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
32. Trentini, W. C. (1986). Genus Caryophanon. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1259-1260. Edited by P. H. Sneath, N. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
33. Versalovic, J., Schneider, M., De Bruijn, F. J. & Lupksi, J. R. (1994). Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5, 25-40.
34. Willems, A., Doignon-Bourcier, F., Goris, J., Coopman, R., de Lajudie, P., De Vos, P. & Gillis, M. (2001). DNA-DNA hybridization study of Bradyrhizobium strains. Int J Syst Evol Microbiol 51, 1315-1322.
35. Wisotzkey, J. D., Jurtshuk, P., Jr, Fox, G. E., Deinhard, G. & Poralla, K. (1992). Comparative sequence analysis on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol 42, 263-269.