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Volumn 2, Issue 24, 2011, Pages 3118-3123

Detecting chemically modified DNA bases using surface-enhanced raman spectroscopy

Author keywords

Kinetics; Spectroscopy

Indexed keywords

ADDITIONAL SAMPLES; CHEMICALLY MODIFIED; CLINICAL DIAGNOSTICS; GUANINE OXIDATION; HYDROXYMETHYLATION; LABEL FREE; MODIFIED DNA; PHENOTYPIC CHANGES; POST-TRANSLATIONAL MODIFICATIONS; ROUTINE ANALYSIS; SURFACE ENHANCED RAMAN SPECTROSCOPY;

EID: 84867473669     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz201423b     Document Type: Article
Times cited : (73)

References (42)
  • 1
    • 0023279926 scopus 로고
    • The inheritance of epigenetic defects
    • Holliday, R. The Inheritance of Epigenetic Defects. Science 1987, 238, 163-170.
    • (1987) Science , vol.238 , pp. 163-170
    • Holliday, R.1
  • 2
    • 40849139208 scopus 로고    scopus 로고
    • Epigenetics in cancer
    • Esteller, M. Epigenetics in Cancer. N. Engl. J. Med. 2008, 358, 1148-1159.
    • (2008) N. Engl. J. Med. , vol.358 , pp. 1148-1159
    • Esteller, M.1
  • 3
    • 0020699979 scopus 로고
    • Hypomethylation distinguishes genes of some human cancers from their normal counterparts
    • Feinberg, A. P.; Vogelstein, B Hypomethylation Distinguishes Genes of Some Human Cancers from Their Normal Counterparts. Nature 1983, 301, 89-92.
    • (1983) Nature , vol.301 , pp. 89-92
    • Feinberg, A.P.1    Vogelstein, B.2
  • 4
    • 0024365892 scopus 로고
    • Epigenetic changes may contribute to the formation and spontaneous regression of retinoblastoma
    • Greger, V; Passarge, E; Hopping, W; Messmer, E; Horsthemke, B Epigenetic Changes May Contribute to the Formation and Spontaneous Regression of Retinoblastoma. Hum. Genet. 1989, 83, 155-158.
    • (1989) Hum. Genet. , vol.83 , pp. 155-158
    • Greger, V.1    Passarge, E.2    Hopping, W.3    Messmer, E.4    Horsthemke, B.5
  • 5
    • 0028875205 scopus 로고
    • Methylation of the 5′ cpg island of the p16/cdkn2 tumor suppressor gene in normal and transformed human tissues correlates with gene silencing
    • Gonzalez-Zulueta, M; Bender, C. M.; Yang, A. S.; Nguyen, T.; Beart, R. W.; Van Tornout, J. M.; Jones, P. A. Methylation of the 5′ CpG Island of the p16/CDKN2 Tumor Suppressor Gene in Normal and Transformed Human Tissues Correlates with Gene Silencing. Cancer Res. 1995, 55, 4531-4535.
    • (1995) Cancer Res. , vol.55 , pp. 4531-4535
    • Gonzalez-Zulueta, M.1    Bender, C.M.2    Yang, A.S.3    Nguyen, T.4    Beart, R.W.5    Van Tornout, J.M.6    Jones, P.A.7
  • 6
    • 33744805399 scopus 로고    scopus 로고
    • Specific activation of microrna-127 with downregulation of the proto-oncogene bcl6 by chromatin-modifying drugs in human cancer cells
    • Saito, Y.; Liang, G.; Egger, G.; Friedman, J. M.; Chuang, J. C.; Coetzee, G. A.; Jones, P. A. Specific Activation of microRNA-127 with Downregulation of the Proto-Oncogene BCL6 by Chromatin-Modifying Drugs in Human Cancer Cells. Cancer Cell 2006, 9, 435-443.
    • (2006) Cancer Cell , vol.9 , pp. 435-443
    • Saito, Y.1    Liang, G.2    Egger, G.3    Friedman, J.M.4    Chuang, J.C.5    Coetzee, G.A.6    Jones, P.A.7
  • 7
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear dna base 5-hydroxymethylcytosine is present in purkinje neurons and the brain
    • Kriaucionis, S; Heintz, N The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain. Science 2009, 324, 929-930.
    • (2009) Science , vol.324 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 9
    • 77954061853 scopus 로고    scopus 로고
    • Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in dna
    • Nestor, C.; Ruzov, A.; Meehan, R. R.; Dunican, D. S. Enzymatic Approaches and Bisulfite Sequencing Cannot Distinguish between 5-Methylcytosine and 5-Hydroxymethylcytosine in DNA. BioTechniques 2010, 48, 317-319.
    • (2010) BioTechniques , vol.48 , pp. 317-319
    • Nestor, C.1    Ruzov, A.2    Meehan, R.R.3    Dunican, D.S.4
  • 11
  • 12
    • 0026684849 scopus 로고
    • Evidence that muty and mutm combine to prevent mutations by an oxidatively damaged form of guanine in dna
    • Michaels, M. L.; Cruz, C; Grollman, A. P.; Miller, J. H. Evidence that MutY and MutM Combine to Prevent Mutations by an Oxidatively Damaged Form of Guanine in DNA. Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 7022-7025.
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 7022-7025
    • Michaels, M.L.1    Cruz, C.2    Grollman, A.P.3    Miller, J.H.4
  • 13
    • 7944219981 scopus 로고    scopus 로고
    • DNA oxidation products, antioxidant status and cancer prevention
    • Thompson, H. J. DNA Oxidation Products, Antioxidant Status, and Cancer Prevention. J. Nutr. 2004, 134, 3186-3187.
    • (2004) J. Nutr. , vol.134 , pp. 3186-3187
    • Thompson, H.J.1
  • 14
    • 0037355974 scopus 로고    scopus 로고
    • Sensitive detection of dna methylation
    • Cottrell, S; Laird, P. W. Sensitive Detection of DNA Methylation. Ann. N.Y. Acad. Sci. 2003, 983, 120-130.
    • (2003) Ann. N.Y. Acad. Sci. , vol.983 , pp. 120-130
    • Cottrell, S.1    Laird, P.W.2
  • 17
    • 0000107007 scopus 로고    scopus 로고
    • Spectroscopy of single hemoglobin molecules by surface enhanced raman scattering
    • Xu, H.; Bjerneld, E. J.; Kall, M.; Borjesson, L. Spectroscopy of Single Hemoglobin Molecules by Surface Enhanced Raman Scattering. Phys. Rev. Lett. 1999, 83, 4357-4360.
    • (1999) Phys. Rev. Lett. , vol.83 , pp. 4357-4360
    • Xu, H.1    Bjerneld, E.J.2    Kall, M.3    Borjesson, L.4
  • 18
    • 78650131517 scopus 로고    scopus 로고
    • SERS detection of biomolecules using lithographed nanoparticles towards a reproducible sers biosensor
    • David, C.; Guillot, N.; Shen, H.; Toury, T.; Lamy de la Chapelle, M. SERS Detection of Biomolecules Using Lithographed Nanoparticles Towards a Reproducible SERS Biosensor. Nanotechnology 2010, 21.
    • (2010) Nanotechnology , pp. 21
    • David, C.1    Guillot, N.2    Shen, H.3    Toury, T.4    Lamy De La Chapelle, M.5
  • 19
    • 58149096484 scopus 로고    scopus 로고
    • Controlled plasmonic nanostructures for surface-enhanced spectroscopy and sensing
    • Camden, J. P.; Dieringer, J. A.; Zhao, J.; Duyne, R. P. V. Controlled Plasmonic Nanostructures for Surface-Enhanced Spectroscopy and Sensing. Acc. Chem. Res. 2008, 41, 1653-1661.
    • (2008) Acc. Chem. Res. , vol.41 , pp. 1653-1661
    • Camden, J.P.1    Dieringer, J.A.2    Zhao, J.3    Duyne, R.P.V.4
  • 20
    • 77954687757 scopus 로고    scopus 로고
    • Aptatag-based multiplexed assay for protein detection by surface-enhanced raman spectroscopy
    • Fabris, L.; Schierhorn, M.; Moskovits, M.; Bazan, G. C. Aptatag-Based Multiplexed Assay for Protein Detection by Surface-Enhanced Raman Spectroscopy. Small 2010, 6, 1550-1557.
    • (2010) Small , vol.6 , pp. 1550-1557
    • Fabris, L.1    Schierhorn, M.2    Moskovits, M.3    Bazan, G.C.4
  • 22
    • 77956635234 scopus 로고    scopus 로고
    • Label-free detection of dna hybridization using surface enhanced raman spectroscopy
    • Barhoumi, A.; Halas, N. J. Label-Free Detection of DNA Hybridization Using Surface Enhanced Raman Spectroscopy. J. Am. Chem. Soc. 2010, 132, 12792-12793.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 12792-12793
    • Barhoumi, A.1    Halas, N.J.2
  • 23
    • 77951548231 scopus 로고    scopus 로고
    • Real-time monitoring of lipid transfer between vesicles and hybrid bilayers on au nanoshells using surface enhanced raman scattering (sers)
    • Kundu, J.; Levin, C. S.; Halas, N. J. Real-Time Monitoring of Lipid Transfer between Vesicles and Hybrid Bilayers on Au Nanoshells Using Surface Enhanced Raman Scattering (SERS). Nanoscale 2009, 1, 114-117.
    • (2009) Nanoscale , vol.1 , pp. 114-117
    • Kundu, J.1    Levin, C.S.2    Halas, N.J.3
  • 24
    • 33646008874 scopus 로고    scopus 로고
    • 6-methyl-adenine: An epigenetic signal for dna-protein interactions
    • 6-Methyl-adenine: an Epigenetic Signal for DNA-Protein Interactions. Nat. Rev. Microbiol. 2006, 4, 183-192.
    • (2006) Nat. Rev. Microbiol. , vol.4 , pp. 183-192
    • Wion, D.1    Casadesus, J.2
  • 26
    • 0035189042 scopus 로고    scopus 로고
    • Roles of dna adenine methylation in regulating bacterial gene expression and virulence
    • Low, D. A.; Weyand, N. J.; Mahan, M. J. Roles of DNA Adenine Methylation in Regulating Bacterial Gene Expression and Virulence. Infect. Immun. 2001, 69, 7197-7204.
    • (2001) Infect. Immun. , vol.69 , pp. 7197-7204
    • Low, D.A.1    Weyand, N.J.2    Mahan, M.J.3
  • 28
    • 0031823596 scopus 로고    scopus 로고
    • GATC motifs may alter the conformation of dna depending on sequence context and n6-adenine methylation status: Possible implications for dna-protein recognition
    • Polaczek, P.; Kwan, K.; Campbell, J. L. GATC Motifs May Alter the Conformation of DNA Depending on Sequence Context and N6-Adenine Methylation Status: Possible Implications for DNA-Protein Recognition. Mol. Gen. Genet. 1998, 258, 488-493.
    • (1998) Mol. Gen. Genet. , vol.258 , pp. 488-493
    • Polaczek, P.1    Kwan, K.2    Campbell, J.L.3
  • 29
    • 0023677502 scopus 로고
    • Timing and targeting: The biological functions of dam methylation in e. coli
    • Messer, W.; Noyer-Weidner, M. Timing and Targeting: The Biological Functions of Dam Methylation in E. coli. Cell 1988, 54, 735-737.
    • (1988) Cell , vol.54 , pp. 735-737
    • Messer, W.1    Noyer-Weidner, M.2
  • 30
    • 0035577862 scopus 로고    scopus 로고
    • Dissecting complex epigenetic alterations in breast cancer using cpg island microarrays
    • Yan, P. S.; Chen, C. M.; Shi, H.; Rahmatpanah, F.; Wei, S. H.; Caldwell, C. W.; Huang, T. H. Dissecting Complex Epigenetic Alterations in Breast Cancer Using CpG Island Microarrays. Cancer Res. 2001, 61, 8375-8380.
    • (2001) Cancer Res. , vol.61 , pp. 8375-8380
    • Yan, P.S.1    Chen, C.M.2    Shi, H.3    Rahmatpanah, F.4    Wei, S.H.5    Caldwell, C.W.6    Huang, T.H.7
  • 31
    • 0017108205 scopus 로고
    • Adenine methylation of okazaki fragments in escherichia coli
    • Marinus, M. G. Adenine Methylation of Okazaki Fragments in Escherichia coli. J. Bacteriol. 1976, 128, 853-854.
    • (1976) J. Bacteriol. , vol.128 , pp. 853-854
    • Marinus, M.G.1
  • 32
    • 0035313401 scopus 로고    scopus 로고
    • DNA methylation learns to fly
    • Lyko, F. DNA Methylation Learns to Fly. Trends Genet. 2001, 17, 169-172.
    • (2001) Trends Genet. , vol.17 , pp. 169-172
    • Lyko, F.1
  • 34
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird, A. DNA Methylation Patterns and Epigenetic Memory. Genes Dev. 2002, 16, 6-21.
    • (2002) Genes Dev. , vol.16 , pp. 6-21
    • Bird, A.1
  • 35
    • 0033753779 scopus 로고    scopus 로고
    • The dna methyltransferases of mammals
    • Bestor, T. H. The DNA Methyltransferases of Mammals. Hum. Mol. Genet. 2000, 9, 2395-2402.
    • (2000) Hum. Mol. Genet. , vol.9 , pp. 2395-2402
    • Bestor, T.H.1
  • 36
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • Jones, P. A.; Baylin, S. B. The Fundamental Role of Epigenetic Events in Cancer. Rev. Genet. 2002, 3, 415-428.
    • (2002) Rev. Genet. , vol.3 , pp. 415-428
    • Jones, P.A.1    Baylin, S.B.2
  • 38
    • 0034968819 scopus 로고    scopus 로고
    • Methylated cytosine and the brain: A new base for neuroscience
    • Tucker, K. L. Methylated Cytosine and the Brain: A New Base for Neuroscience. Neuron 2001, 30, 649-652.
    • (2001) Neuron , vol.30 , pp. 649-652
    • Tucker, K.L.1
  • 39
    • 79952749156 scopus 로고    scopus 로고
    • DNA methyltransferase 1, cytosine methylation, and cytosine hydroxymethylation in mammalian mitochondria
    • Shock, L. S.; Thakkar, P. V.; Peterson, E. J.; Moran, R. G.; Taylor, S. M. DNA Methyltransferase 1, Cytosine Methylation, and Cytosine Hydroxymethylation in Mammalian Mitochondria. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 3630-3635.
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 3630-3635
    • Shock, L.S.1    Thakkar, P.V.2    Peterson, E.J.3    Moran, R.G.4    Taylor, S.M.5
  • 41
    • 2342618350 scopus 로고    scopus 로고
    • Surface enhanced raman scattering in the near infrared using metal nanoshell substrates
    • Oldenburg, S. J.; Westcott, S. L.; Averitt, R. D.; Halas, N. J. Surface Enhanced Raman Scattering in the Near Infrared Using Metal Nanoshell Substrates. J. Chem. Phys. 1999, 111, 4729-4735.
    • (1999) J. Chem. Phys. , vol.111 , pp. 4729-4735
    • Oldenburg, S.J.1    Westcott, S.L.2    Averitt, R.D.3    Halas, N.J.4
  • 42
    • 72449157869 scopus 로고    scopus 로고
    • Label-free, aptamer-based all-optical molecular recognition
    • Neumann, O.; Tam, F.; Zhang, D.; Halas, N. J. Label-Free, Aptamer-Based All-Optical Molecular Recognition. Anal. Chem. 2009, 81, 10002-10006.
    • (2009) Anal. Chem. , vol.81 , pp. 10002-10006
    • Neumann, O.1    Tam, F.2    Zhang, D.3    Halas, N.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.