Extracting Multiscale Pattern Information of fMRI Based Functional Brain Connectivity with Application on Classification of Autism Spectrum Disorders

PLoS ONE

Volumn 7, Issue 10, 2012, Pages

  Wang, Hui ^a   Chen, Chen ^a   Fushing, Hsieh ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADOLESCENT; ARTICLE; AUTISM; BRAIN MAPPING; CLINICAL ARTICLE; CONTROLLED STUDY; FEMALE; FUNCTIONAL ASSESSMENT; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; IMAGE ANALYSIS; IMAGE PROCESSING; LEARNING ALGORITHM; MALE; NEUROIMAGING; NEUROPHYSIOLOGY; SENSITIVITY AND SPECIFICITY; TEMPERATURE;

ADOLESCENT; ALGORITHMS; AUTISTIC DISORDER; BRAIN; BRAIN MAPPING; CLUSTER ANALYSIS; FEMALE; HUMANS; LEARNING; LOGISTIC MODELS; MAGNETIC RESONANCE IMAGING; MALE; NEURAL PATHWAYS;

EID: 84867304755     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0045502     Document Type: Article

References (34)

1. Bullmore E, Sporns O, (2009) Complex brain networks: graph theoretical analysis of structural and functional systems. Nature Reviews Neuroscience 10: 186-198.
2. Amaral DG, Schumann CM, Nordahl CW, (2008) Neuroanatomy of autism. Trends in Neuroscience 31: 137-145.
3. Williams DL, Goldstein G, Minshew NJ, (2006) Neuropsychologic Functioning in Children with Autism: Further Evidence for Disordered Complex Information-Processing. Child Neuropsychology 12: 279-298.
4. Just MA, Cherkassky VL, Keller TA, Kana RK, Minshew NJ, (2006) Functional and Anatomical Cortical Underconnectivity in Autism: Evidence from an fMRI Study of an Executive Function Task and Corpus Callosum Morphometry. Cerebral Cortex 17: 951-961.
5. Anderson JS, Nielsen JA, Froehlich AL, DuBray MB, Druzgal TJ, et al. (2011) Functional connectivity magnetic resonance imaging classification of autism. Brain 134: 3742-3754.
6. Just MA, Cherkassky VL, Keller TA, Minshew NJ, (2004) Cortical activation and synchronization during sentence comprehension in high-functioning autism: evidence of underconnectivity. Brain 127: 1811-1821.
7. Courchesne E, Pierce K, (2005) Why the frontal cortex in autism might be talking only to itself: local over-connectivity but long-distance disconnection. Current Opinion in Neurobiology 15: 225-230.
8. Geschwind DH, Levitt P, (2007) Autism spectrum disorders: developmental disconnection syndromes. Current Opinion in Neurobiology 17: 103-111.
9. Lee PS, Foss-Feig J, Henderson JG, Kenworthy LE, Gilotty L, (2007) Atypical neural substrates of Embedded Figures Task performance in children with Autism Spectrum Disorder. NeuroImage 38: 184-193.
10. Solomon M, Ozonoff SJ, Ursua SC, Ravizzad S, Cummings N, et al. (2009) The neural substrates of cognitive control deficits in autism spectrum disorders. Neuropsychologia 47: 2515-2526.
11. Muller RA, Shih P, Keehn B, Deyoe JR, Leyden KM, et al. (2011) Underconnected, but How? A Survey of Functional Connectivity MRI Studies in Autism Spectrum Disorders. Cerebral Cortex 21: 2233-2243.
12. Shen H, Wang L, Liu Y, Hu D, (2010) Discriminative analysis of resting-state functional connectivity patterns of schizophrenia using low dimensional embedding of fMRI. NeuroImage 49: 3110-3121.
13. Fair DA, Cohen AL, Power JD, Dosenbach NUF, Church JA, et al. (2009) Functional brain networks develop from a "local to distributed" organization. PLoS Computational Biology 5: e1000381: 14.
14. Lynall ME, Bassett DS, Kerwin R, McKenna PJ, Kitzbichler M, et al. (2010) Functional Connectivity and Brain Networks in Schizophrenia. The Journal of Neuroscience 30: 9477-9487.
15. Newman MEJ, (2006) Modularity and community structure in network. Proceeding of National Academe of Science 103: 8577-8582.
16. Fushing H, McAssey M, (2010) Time, temperature, and data cloud geometry. Physical Review E 82: 061110.
17. Barber AD, Carter CS, (2005) Cognitive control involved in overcoming prepotent response tendencies and switching between tasks. Cerebral Cortex 15: 899-912.
18. Rosano C, Aizenstein H, Cochran J, Saxton J, De Kosky S, et al. (2005) Functional neuroimaging indicators of successful executive control in the oldest old. NeuroImage 28: 881-889.
19. Snitz BE, MacDonald AI, Cohen JD, Cho RY, Becker T, et al. (2005) Lateral and Medial Hypofrontality in First-Episode Schizophrenia: Functional Activity in a Medication-Naive State and Effects of Short-Term Atypical Antipsychotic Treatment. American Journal of Psychiatry 162: 2322-2329.
20. Solomon M, Ozonoff SJ, Cummings N, Carter CS, (2008) Cognitive control in autism spectrum disorder. International Journal of Developmental Neuroscience 26: 239-247.
21. Tzourio-Mazoyer N, Landeau B, Papathanassiou D, Crivello F, Etard O, et al. (2002) Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain. NeuroImage 15: 273-289.
22. Zeng L, Shen H, Liu L, Wang L, Li B, et al. (2012) Identifying major depression using whole-brain functional connectivity: a multivariate pattern analysis. Brain 135: 1498-1507.
23. Rissman J, Gazzaley A, D'Esposito M, (2004) Measuring functional connectivity during distinct stages of a cognitive task. NeuroImage 23: 752-763.
24. Johnson SC, (1967) Hierarchical clustering schemes. Psychometrika 32: 241-254.
25. Koshino H, Carpenter PA, Minshew NJ, Cherkassky VL, Keller TA, et al. (2005) Functional connectivity in a fMRI working memory task in high-functioning autism. NeuroImage 24: 810-821.
26. Rand WM, (1971) Objective Criteria for the Evaluation of Clustering Methods. Journal of the American Statistical Association 66: 846-850.
27. Milo R, Itzkovitz S, Kashtan N, Levitt R, Shen-Orr S, et al. (2004) Superfamilies of Evolved and Designed Networks. Science 303: 1538-1542.
28. Blatt M, Wiseman S, Domany E, (1997) Data Clustering Using a Model Granular Magnet. Neural Computation 9: 1805-1842.
29. Efron B, Tibshirani R, (1997) Improvements on Cross-Validation: The. 632+ Bootstrap Method. Journal of the American Statistical Association 92: 548-560.
30. Ecker C, Marquand A, Mourão-Miranda J, Johnston P, Daly EM, et al. (2010) Describing the Brain in Autism in Five Dimensions{pipe}Magnetic Resonance Imaging-Assisted Diagnosis of Autism Spectrum Disorder Using a Multiparameter Classification Approach. Journal of Neuroscience 30: 10612-10623.
31. Stevenson JL, Kellett KA, (2010) Can Magnetic Resonance Imaging Aid Diagnosis of the Autism Spectrum? Journal of Neuroscience 30: 16763-16765.
32. Friston KJ, (2011) Functional and Effective Connectivity: A Review. Brain Connectivity 1: 13-36.
33. Smith SM, Miller KL, Salimi-Khorshidi G, Webster M, Beckmann CF, et al. (2011) Network modelling methods for FMRI. NeuroImage 54: 875-891.
34. Uddin LQ, Menon V, Young CB, Ryali S, Chen T, et al. (2011) Multivariate Searchlight Classification of Structural Magnetic Resonance Imaging in Children and Adolescents with Autism. Biological Psychiatry 70: 833-841.