메뉴 건너뛰기




Volumn 48, Issue 4, 2012, Pages 305-313

Spatial genetic variation, phylogeography and barcoding of the peritrichous ciliate Carchesium polypinum

Author keywords

Barcoding; Carchesium polypinum; Cosmopolitan; Cryptic species; Genetic diversity; Microbial biodiversity

Indexed keywords

CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA; RIBOSOME DNA;

EID: 84867096529     PISSN: 09324739     EISSN: 16180429     Source Type: Journal    
DOI: 10.1016/j.ejop.2012.04.001     Document Type: Article
Times cited : (13)

References (54)
  • 2
    • 33645114487 scopus 로고    scopus 로고
    • Intraspecific genetic variation in Paramecium revealed by mitochondrial cytochrome c oxidase I sequences
    • Barth D., Krenek S., Fokin S.I., Berendonk T.U. Intraspecific genetic variation in Paramecium revealed by mitochondrial cytochrome c oxidase I sequences. J. Eukaryot. Microbiol. 2006, 53:20-25.
    • (2006) J. Eukaryot. Microbiol. , vol.53 , pp. 20-25
    • Barth, D.1    Krenek, S.2    Fokin, S.I.3    Berendonk, T.U.4
  • 4
    • 33646253454 scopus 로고    scopus 로고
    • Population size does not influence mitochondrial genetic diversity in animals
    • Bazin E., Glemin S., Galtier N. Population size does not influence mitochondrial genetic diversity in animals. Science 2006, 312:570-572.
    • (2006) Science , vol.312 , pp. 570-572
    • Bazin, E.1    Glemin, S.2    Galtier, N.3
  • 5
    • 35648972049 scopus 로고    scopus 로고
    • Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena
    • Chantangsi C., Lynn D.H., Brandl M.T., Cole J.C., Hetrick N., Ikonomi P. Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena. IJSEM 2007, 57:2412-2425.
    • (2007) IJSEM , vol.57 , pp. 2412-2425
    • Chantangsi, C.1    Lynn, D.H.2    Brandl, M.T.3    Cole, J.C.4    Hetrick, N.5    Ikonomi, P.6
  • 6
    • 0033771358 scopus 로고    scopus 로고
    • TCS: a computer program to estimate gene genealogies
    • Clement M., Posada D., Crandall K.A. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 2000, 9:1657-1660.
    • (2000) Mol. Ecol. , vol.9 , pp. 1657-1660
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 7
    • 34247638972 scopus 로고    scopus 로고
    • Global molecular phylogeography reveals persistent Arctic circumpolar isolation in a marine planktonic protist
    • Darling K.F., Kucera M., Wade C.M. Global molecular phylogeography reveals persistent Arctic circumpolar isolation in a marine planktonic protist. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:5002-5007.
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 5002-5007
    • Darling, K.F.1    Kucera, M.2    Wade, C.M.3
  • 8
    • 18244371073 scopus 로고    scopus 로고
    • Ernst Mayr and the modern concept of species
    • De Queiroz K. Ernst Mayr and the modern concept of species. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:6600-6607.
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 6600-6607
    • De Queiroz, K.1
  • 9
    • 33748585866 scopus 로고
    • Morphology and morphogenesis in Carchesium polypinum (Ciliophora, Peritrichida)
    • Esteban G., Fernadez-Galiano D. Morphology and morphogenesis in Carchesium polypinum (Ciliophora, Peritrichida). Trans. Am. Microsc. Soc. 1989, 108:345-353.
    • (1989) Trans. Am. Microsc. Soc. , vol.108 , pp. 345-353
    • Esteban, G.1    Fernadez-Galiano, D.2
  • 11
    • 33749436421 scopus 로고    scopus 로고
    • Multiple cosmopolitan ecotypes within a microbial eukaryote morphospecies
    • Finlay B.J., Esteban G.F., Brown S., Fenchel T., Hoef-Emden K. Multiple cosmopolitan ecotypes within a microbial eukaryote morphospecies. Protist 2006, 157:377-390.
    • (2006) Protist , vol.157 , pp. 377-390
    • Finlay, B.J.1    Esteban, G.F.2    Brown, S.3    Fenchel, T.4    Hoef-Emden, K.5
  • 12
    • 0002480165 scopus 로고
    • Taxonomische und ökologische Revision der Ciliaten des Saprobiensystems-Band II: Peritrichia, Heterotrichida, Odontostomatida. Informationberichte des Bayer
    • Foissner W., Berger H., Kohmann F. Taxonomische und ökologische Revision der Ciliaten des Saprobiensystems-Band II: Peritrichia, Heterotrichida, Odontostomatida. Informationberichte des Bayer. Landesamtes für Wasserwirtschaft. Heft 1992, 5(92).
    • (1992) Landesamtes für Wasserwirtschaft. Heft , vol.5 , Issue.92
    • Foissner, W.1    Berger, H.2    Kohmann, F.3
  • 13
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer O., Black M., Hoeh W., Lutz R., Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 1994, 3:294-299.
    • (1994) Mol. Mar. Biol. Biotechnol. , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 14
    • 0029391126 scopus 로고
    • Statistical properties of segregating sires
    • Fu Y.X. Statistical properties of segregating sires. Theor. Popul. Biol. 1995, 48:172-197.
    • (1995) Theor. Popul. Biol. , vol.48 , pp. 172-197
    • Fu, Y.X.1
  • 15
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu Y.X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 1997, 147:915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 16
    • 66249084524 scopus 로고    scopus 로고
    • High-level genetic diversity but no population structure inferred from nuclear and mitochondrial markers of the peritrichous ciliate Carchesium polypinum in the Grand River basin North America
    • Gentekaki E., Lynn D.H. High-level genetic diversity but no population structure inferred from nuclear and mitochondrial markers of the peritrichous ciliate Carchesium polypinum in the Grand River basin North America. Appl. Environ. Microbiol. 2009, 75:3187-3195.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 3187-3195
    • Gentekaki, E.1    Lynn, D.H.2
  • 17
    • 78449271446 scopus 로고    scopus 로고
    • Evidence for cryptic speciation in Carchesium polypinum Linnaeus, 1758 Peritrichia inferred from mitochondrial, nuclear, and morphological markers
    • Gentekaki E., Lynn D.H. Evidence for cryptic speciation in Carchesium polypinum Linnaeus, 1758 Peritrichia inferred from mitochondrial, nuclear, and morphological markers. J. Eukaryot. Microbiol. 2010, 57:508-519.
    • (2010) J. Eukaryot. Microbiol. , vol.57 , pp. 508-519
    • Gentekaki, E.1    Lynn, D.H.2
  • 18
    • 0242578620 scopus 로고    scopus 로고
    • PhyML, a simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., Gascuel O. PhyML, a simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 19
    • 23144433822 scopus 로고    scopus 로고
    • PHYML online - a web server for fast maximum likelihood-based phylogenetic inference
    • Web server issue: W557-W559
    • Guindon S., Lethiec F., Duroux P., Gascuel O. PHYML online - a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res. 2005, 33. Web server issue: W557-W559.
    • (2005) Nucleic Acids Res. , vol.33
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 20
    • 33947620069 scopus 로고    scopus 로고
    • DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics
    • Hajibabaei M., Singer G.A.C., Hebert P.D.N., Hickey D.A. DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends Genet. 2007, 23:167-172.
    • (2007) Trends Genet. , vol.23 , pp. 167-172
    • Hajibabaei, M.1    Singer, G.A.C.2    Hebert, P.D.N.3    Hickey, D.A.4
  • 21
    • 0042531561 scopus 로고    scopus 로고
    • Barcoding animal life: cytochrome c oxidase subunit I divergences among closely related species
    • Hebert P.D.N., Ratnasingham S., deWaard J.R. Barcoding animal life: cytochrome c oxidase subunit I divergences among closely related species. Proc. Biol. Sci. 2003, 270(Suppl. I):S96-S99.
    • (2003) Proc. Biol. Sci. , vol.270 , Issue.SUPPL. 1
    • Hebert, P.D.N.1    Ratnasingham, S.2    deWaard, J.R.3
  • 23
    • 6944255373 scopus 로고    scopus 로고
    • Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
    • Hebert P.D.N., Penton E.H., Burns J.M., Janzen D.H., Hallwachs W. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc. Natl. Acad. Sci. U.S.A. 2004, 101:14812-14817.
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , pp. 14812-14817
    • Hebert, P.D.N.1    Penton, E.H.2    Burns, J.M.3    Janzen, D.H.4    Hallwachs, W.5
  • 24
    • 31344432889 scopus 로고    scopus 로고
    • The promise of DNA barcoding for taxonomy
    • Hebert P.D.N., Gregory T.R. The promise of DNA barcoding for taxonomy. Syst. Biol. 2005, 54:852-859.
    • (2005) Syst. Biol. , vol.54 , pp. 852-859
    • Hebert, P.D.N.1    Gregory, T.R.2
  • 25
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 26
    • 0036959114 scopus 로고    scopus 로고
    • Phylogeographic breaks without geographic barriers to gene flow
    • Irwin D.E. Phylogeographic breaks without geographic barriers to gene flow. Evolution 2002, 56:2383-2394.
    • (2002) Evolution , vol.56 , pp. 2383-2394
    • Irwin, D.E.1
  • 28
    • 78650419339 scopus 로고    scopus 로고
    • Barcoding Tetrahymena: discriminating species and identifying unknowns using the cytochrome c oxidase subunit I cox-1 barcode
    • Kher C.P., Doerder P.F., Cooper J., Ikonomi P., Achilles-Day U., Kupper F.C., Lynn D.H. Barcoding Tetrahymena: discriminating species and identifying unknowns using the cytochrome c oxidase subunit I cox-1 barcode. Protist 2010, 162:2-13.
    • (2010) Protist , vol.162 , pp. 2-13
    • Kher, C.P.1    Doerder, P.F.2    Cooper, J.3    Ikonomi, P.4    Achilles-Day, U.5    Kupper, F.C.6    Lynn, D.H.7
  • 29
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 30
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2, molecular evolutionary genetics analysis software
    • Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2, molecular evolutionary genetics analysis software. Bioinformatics 2001, 17:1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 31
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 32
    • 0039686653 scopus 로고
    • The morphology and morphogenesis of the bucal ciliary organelles in some peritrichous ciliates
    • Lom J. The morphology and morphogenesis of the bucal ciliary organelles in some peritrichous ciliates. Arch. Protistenkd. 1964, 107:S131-S162.
    • (1964) Arch. Protistenkd. , vol.107
    • Lom, J.1
  • 33
    • 77249122950 scopus 로고    scopus 로고
    • Patterns of genetic diversity in the marine heterotrophic flagellate Oxyrrhis marina Alveolata: Dinophyceae
    • Lowe C.D., Montagnes D.J.S., Martin L.E., Watts P.C. Patterns of genetic diversity in the marine heterotrophic flagellate Oxyrrhis marina Alveolata: Dinophyceae. Protist 2010, 161:212-221.
    • (2010) Protist , vol.161 , pp. 212-221
    • Lowe, C.D.1    Montagnes, D.J.S.2    Martin, L.E.3    Watts, P.C.4
  • 34
    • 33645117088 scopus 로고    scopus 로고
    • Intraspecific phylogeography of Carchesium polypinum Peritrichia, Ciliophora from China, inferred from 18S-ITS1-5.8S ribosomal DNA
    • Miao W., Yu Y., Shen Y., Zhang X. Intraspecific phylogeography of Carchesium polypinum Peritrichia, Ciliophora from China, inferred from 18S-ITS1-5.8S ribosomal DNA. Sci. China Ser. C Life Sci. 2004, 47:11-17.
    • (2004) Sci. China Ser. C Life Sci. , vol.47 , pp. 11-17
    • Miao, W.1    Yu, Y.2    Shen, Y.3    Zhang, X.4
  • 37
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST, testing the model of DNA substitution
    • Posada D., Crandall K.A. MODELTEST, testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 38
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes3: Bayesian inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes3: Bayesian inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 39
    • 1342290847 scopus 로고    scopus 로고
    • Genetic differentiation among populations of the planktonic marine diatom Ditylum brightwellii Bacillariophyceae
    • Rynearson T.A., Armbrust E.V. Genetic differentiation among populations of the planktonic marine diatom Ditylum brightwellii Bacillariophyceae. J. Phycol. 2004, 43:34-43.
    • (2004) J. Phycol. , vol.43 , pp. 34-43
    • Rynearson, T.A.1    Armbrust, E.V.2
  • 40
    • 0000456760 scopus 로고
    • The species concept
    • Simpson G.G. The species concept. Evolution 1951, 5:285-298.
    • (1951) Evolution , vol.5 , pp. 285-298
    • Simpson, G.G.1
  • 41
    • 28944432140 scopus 로고    scopus 로고
    • Global dispersal and ancient cryptic species in the smallest marine eukaryotes
    • Šlapeta J., Lopez-Garcia P., Moreira D. Global dispersal and ancient cryptic species in the smallest marine eukaryotes. Mol. Biol. Evol. 2006, 23:23-29.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 23-29
    • Šlapeta, J.1    Lopez-Garcia, P.2    Moreira, D.3
  • 43
    • 77954316382 scopus 로고    scopus 로고
    • Comparative analysis of the mitochondrial cytochrome c oxidase subunit I COI gene in ciliates Alveolata, Ciliophora and evaluation of its suitability as a biodiversity marker
    • Strüder-Kypke M.C., Lynn D.H. Comparative analysis of the mitochondrial cytochrome c oxidase subunit I COI gene in ciliates Alveolata, Ciliophora and evaluation of its suitability as a biodiversity marker. Syst. Biodiv. 2010, 8:131-148.
    • (2010) Syst. Biodiv. , vol.8 , pp. 131-148
    • Strüder-Kypke, M.C.1    Lynn, D.H.2
  • 44
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis MEGA software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis MEGA software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 45
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima F. Evolutionary relationship of DNA sequences in finite populations. Genetics 1983, 105:437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 46
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989, 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 47
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • Tajima F. The effect of change in population size on DNA polymorphism. Genetics 1989, 123:597-601.
    • (1989) Genetics , vol.123 , pp. 597-601
    • Tajima, F.1
  • 48
    • 0026662698 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
    • Templeton A.R., Crandall K.A., Sing C.F. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 1992, 132:619-633.
    • (1992) Genetics , vol.132 , pp. 619-633
    • Templeton, A.R.1    Crandall, K.A.2    Sing, C.F.3
  • 50
    • 84867099723 scopus 로고
    • The evolutionary species concept reconsidered
    • Wiley E.O. The evolutionary species concept reconsidered. Syst. Biol. 1978, 56:875-878.
    • (1978) Syst. Biol. , vol.56 , pp. 875-878
    • Wiley, E.O.1
  • 51
    • 3142627654 scopus 로고
    • Carchesium polypinum: cytostructure after Protargol silver impregnation
    • Zagon I.S. Carchesium polypinum: cytostructure after Protargol silver impregnation. Trans. Am. Microsc. Soc. 1970, 89:450-468.
    • (1970) Trans. Am. Microsc. Soc. , vol.89 , pp. 450-468
    • Zagon, I.S.1
  • 52
    • 3142631326 scopus 로고
    • Carchesium polypinum: somatic and buccal structure analysis after Protargol impregnation
    • Zagon I.S., Small E.B. Carchesium polypinum: somatic and buccal structure analysis after Protargol impregnation. Trans. Am. Microsc. Soc. 1970, 89:443-449.
    • (1970) Trans. Am. Microsc. Soc. , vol.89 , pp. 443-449
    • Zagon, I.S.1    Small, E.B.2
  • 53
    • 33748625482 scopus 로고    scopus 로고
    • Population genetic structure of Carchesium polypinum Ciliophora: Peritrichia in four Chinese lakes inferred from ISSR fingerprinting: high diversity but low differentiation
    • Zhang W., Yang J., Yu Y., Shu Y.H., Shen Y.F. Population genetic structure of Carchesium polypinum Ciliophora: Peritrichia in four Chinese lakes inferred from ISSR fingerprinting: high diversity but low differentiation. J. Eukaryot. Microbiol. 2006, 53:358-363.
    • (2006) J. Eukaryot. Microbiol. , vol.53 , pp. 358-363
    • Zhang, W.1    Yang, J.2    Yu, Y.3    Shu, Y.H.4    Shen, Y.F.5
  • 54
    • 0023462128 scopus 로고
    • The cytochrome oxidase subunit I gene of Tetrahymena: a 57 amino acid NH2 - terminal extension and a 108 amino acid insert
    • Ziaie Z., Suyama Y. The cytochrome oxidase subunit I gene of Tetrahymena: a 57 amino acid NH2 - terminal extension and a 108 amino acid insert. Curr. Genet. 1987, 12:357-368.
    • (1987) Curr. Genet. , vol.12 , pp. 357-368
    • Ziaie, Z.1    Suyama, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.