-
1
-
-
4243754128
-
-
PRLTAO 0031-9007 10.1103/PhysRevLett.78.2690
-
C. Jarzynski, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.78. 2690 78, 2690 (1997).
-
(1997)
Phys. Rev. Lett.
, vol.78
, pp. 2690
-
-
Jarzynski, C.1
-
2
-
-
0000186593
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.61.2361
-
G. E. Crooks, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.61.2361 61, 2361 (2000).
-
(2000)
Phys. Rev. e
, vol.61
, pp. 2361
-
-
Crooks, G.E.1
-
3
-
-
33749551180
-
Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality
-
DOI 10.1063/1.2166379
-
I. Kosztin, B. Barz, and L. Janosi, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2166379 124, 064106 (2006). (Pubitemid 43248009)
-
(2006)
Journal of Chemical Physics
, vol.124
, Issue.6
, pp. 064106
-
-
Kosztin, I.1
Barz, B.2
Janosi, L.3
-
4
-
-
0042885340
-
-
JCPSA6 0021-9606 10.1063/1.1590311
-
S. Park, F. Khalili-Araghi, E. Tajkhorshid, and K. Schulten, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1590311 119, 3559 (2003).
-
(2003)
J. Chem. Phys.
, vol.119
, pp. 3559
-
-
Park, S.1
Khalili-Araghi, F.2
Tajkhorshid, E.3
Schulten, K.4
-
5
-
-
4143087050
-
-
JCPSA6 0021-9606 10.1063/1.1651473
-
S. Park and K. Schulten, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1651473 120, 5946 (2004).
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 5946
-
-
Park, S.1
Schulten, K.2
-
6
-
-
54949149944
-
-
JCPSA6 0021-9606 10.1063/1.2992153
-
L. Chen, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2992153 129, 144113 (2008).
-
(2008)
J. Chem. Phys.
, vol.129
, pp. 144113
-
-
Chen, L.1
-
7
-
-
79952543578
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.83.021114
-
M. NategholEslam, B. W. Holland, C. G. Gray, and B. Tomberli, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.83.021114 83, 021114 (2011).
-
(2011)
Phys. Rev. e
, vol.83
, pp. 021114
-
-
Nategholeslam, M.1
Holland, B.W.2
Gray, C.G.3
Tomberli, B.4
-
10
-
-
41149175486
-
Prediction of binding free energy for adsorption of antimicrobial peptide lactoferricin B on a POPC membrane
-
DOI 10.1103/PhysRevE.77.031913
-
V. Vivcharuk, B. Tomberli, I. S. Tolokh, and C. G. Gray, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.77.031913 77, 031913 (2008). (Pubitemid 351431343)
-
(2008)
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
, vol.77
, Issue.3
, pp. 031913
-
-
Vivcharuk, V.1
Tomberli, B.2
Tolokh, I.S.3
Gray, C.G.4
-
11
-
-
44949157296
-
-
JPCBFK 1520-6106 10.1021/jp0733163
-
D. Minh and J. McCammon, J. Phys. Chem. B JPCBFK 1520-6106 10.1021/jp0733163 112, 5892 (2008).
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 5892
-
-
Minh, D.1
McCammon, J.2
-
12
-
-
65149099238
-
-
JCPSA6 0021-9606 10.1063/1.3119261
-
F. Ytreberg, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.3119261 130, 164906 (2009).
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 164906
-
-
Ytreberg, F.1
-
13
-
-
79952714526
-
-
PPCPFQ 1463-9076 10.1039/c0cp02799e
-
L. Chen, Phys. Chem. Chem. Phys. PPCPFQ 1463-9076 10.1039/c0cp02799e 13, 6176 (2011).
-
(2011)
Phys. Chem. Chem. Phys.
, vol.13
, pp. 6176
-
-
Chen, L.1
-
14
-
-
33751158845
-
-
JPCHAX 0022-3654 10.1021/j100066a040
-
S. Marrink and H. Berendsen, J. Phys. Chem. JPCHAX 0022-3654 10.1021/j100066a040 98, 4155 (1994).
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 4155
-
-
Marrink, S.1
Berendsen, H.2
-
15
-
-
0029878720
-
VMD: Visual molecular dynamics
-
DOI 10.1016/0263-7855(96)00018-5
-
W. Humphrey, A. Dalke, and K. Schulten, J. Mol. Graphics JMGRDV 0263-7855 10.1016/0263-7855(96)00018-5 14, 33 (1996). (Pubitemid 26152973)
-
(1996)
Journal of Molecular Graphics
, vol.14
, Issue.1
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
16
-
-
68949149548
-
-
BIOJAU 0006-3495 10.1016/j.bpj.2009.04.013
-
S. Jo, J. Lim, J. Klauda, and W. Im, Biophys. J. BIOJAU 0006-3495 10.1016/j.bpj.2009.04.013 97, 50 (2009).
-
(2009)
Biophys. J.
, vol.97
, pp. 50
-
-
Jo, S.1
Lim, J.2
Klauda, J.3
Im, W.4
-
17
-
-
0242593434
-
Development and current status of the CHARMM force field for nucleic acids
-
DOI 10.1002/1097-0282(2000)56:4 <257::AID-BIP10029>3.0.CO;2-W
-
A. D. MacKerell Jr., N. Banavali, and N. Foloppe, Biopolymers BIPMAA 0006-3525 10.1002/1097-0282(2000)56:4<257::AID-BIP10029>3.0.CO;2-W 56, 257 (2000). (Pubitemid 34105873)
-
(2000)
Biopolymers
, vol.56
, Issue.4
, pp. 257-265
-
-
MacKerell Jr., A.D.1
Banavali, N.2
Foloppe, N.3
-
18
-
-
77953377650
-
-
JPCBFK 1520-6106 10.1021/jp101759q
-
J. Klauda, R. Venable, J. Freites, J. O'Connor, D. Tobias, C. Mondragon-Ramirez, I. Vorobyov, A. M. Jr, and R. Pastor, J. Phys. Chem. B JPCBFK 1520-6106 10.1021/jp101759q 114, 7830 (2010).
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 7830
-
-
Klauda, J.1
Venable, R.2
Freites, J.3
O'Connor, J.4
Tobias, D.5
Mondragon-Ramirez, C.6
Vorobyov Jr., I.A.M.7
Pastor, R.8
-
20
-
-
3142721955
-
-
JPCBFK 1520-6106 10.1021/jp035998+
-
W. Shinoda, M. Mikami, T. Baba, and M. Hato, J. Phys. Chem. B JPCBFK 1520-6106 10.1021/jp035998+ 108, 9346 (2004).
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 9346
-
-
Shinoda, W.1
Mikami, M.2
Baba, T.3
Hato, M.4
-
21
-
-
34548535377
-
A molecular-dynamics study of lipid bilayers: Effects of the hydrocarbon chain length on permeability
-
DOI 10.1063/1.2102900, 184714
-
T. Sugii, S. Takagi, and Y. Matsumoto, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2102900 123, 184714 (2005). (Pubitemid 41580130)
-
(2005)
Journal of Chemical Physics
, vol.123
, Issue.18
, pp. 1-8
-
-
Sugii, T.1
Takagi, S.2
Matsumoto, Y.3
-
22
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
DOI 10.1002/jcc.20289
-
J. C. Phillips, R. Braun, W. Wang, J. Gumbart, E. Tajkhorshid, E. Villa, C. Chipot, R. D. Skeel, L. Kale, and K. Schulten, J. Comput. Chem. JCCHDD 0192-8651 10.1002/jcc.20289 26, 1781 (2005). (Pubitemid 43078511)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
23
-
-
0000407893
-
-
JACSAT 0002-7863 10.1021/ja01146a002
-
J. Wang, J. Am. Chem. Soc. JACSAT 0002-7863 10.1021/ja01146a002 73, 510 (1951).
-
(1951)
J. Am. Chem. Soc.
, vol.73
, pp. 510
-
-
Wang, J.1
-
25
-
-
6444220229
-
-
JPCBFK 1520-6106 10.1021/jp0477147
-
I. Yeh and G. Hummer, J. Phys. Chem. B JPCBFK 1520-6106 10.1021/jp0477147 108, 15873 (2004).
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 15873
-
-
Yeh, I.1
Hummer, G.2
-
26
-
-
0034738135
-
3 in a lipid bilayer with a cavity insertion variant of the Widom method
-
DOI 10.1021/ja000156z
-
P. Jedlovszky and M. Mezei, J. Am. Chem. Soc. JACSAT 0002-7863 10.1021/ja000156z 122, 5125 (2000). (Pubitemid 30354277)
-
(2000)
Journal of the American Chemical Society
, vol.122
, Issue.21
, pp. 5125-5131
-
-
Jedlovszky, P.1
Mezei, M.2
|