A molecular-dynamics study of lipid bilayers: Effects of the hydrocarbon chain length on permeability

Journal of Chemical Physics

Volumn 123, Issue 18, 2005, Pages

  Sugii, Taisuke ^a   Takagi, Shu ^a   Matsumoto, Yoichiro ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOCORRELATION; DIFFUSION COEFFICIENTS; LIPID BILAYERS; MOLECULAR DYNAMICS SIMULATION;

COMPUTER SIMULATION; CORRELATION METHODS; HYDROCARBONS; MECHANICAL PERMEABILITY; MOLECULAR DYNAMICS; PROBABILITY;

LIPIDS;

1,2 DILAUROYLPHOSPHATIDYLCHOLINE; 1,2-DILAUROYLPHOSPHATIDYLCHOLINE; CARBON MONOXIDE; DIMYRISTOYLPHOSPHATIDYLCHOLINE; DIPALMITOYLPHOSPHATIDYLCHOLINE; HYDROCARBON; NITRIC OXIDE; OXYGEN; PHOSPHATIDYLCHOLINE; WATER;

ARTICLE; CHEMISTRY; COMPUTER SIMULATION; DIFFUSION; LIPID BILAYER; METHODOLOGY; PERMEABILITY; PHYSICAL CHEMISTRY; SOLUBILITY; THERMODYNAMICS;

1,2-DIPALMITOYLPHOSPHATIDYLCHOLINE; CARBON MONOXIDE; CHEMISTRY, PHYSICAL; COMPUTER SIMULATION; DIFFUSION; DIMYRISTOYLPHOSPHATIDYLCHOLINE; HYDROCARBONS; LIPID BILAYERS; NITRIC OXIDE; OXYGEN; PERMEABILITY; PHOSPHATIDYLCHOLINES; SOLUBILITY; THERMODYNAMICS; WATER;

EID: 34548535377     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2102900     Document Type: Article

References (35)

1. S. J. Marrink and M. Berkowitz, in Permeability and Stability of Lipid Bilayers, edited by, E. A. Disalvo, and, S. A. Simon, (CRC, Boca Raton, FL, 1994), pp. 21-48.
2. S. J. Marrink and H. J. C. Berendsen, J. Phys. Chem. 98, 4155 (1994).
3. S. J. Marrink and H. J. C. Berendsen, J. Phys. Chem. 100, 16729 (1996).
4. J. Ulander and A. D. J. Haymet, Biophys. J. 85, 3475 (2003).
5. D. Bemporad, J. W. Essex, and C. Luttmann, J. Phys. Chem. B 108, 4875 (2004).
6. D. Bemporad, C. Luttmann, and J. W. Essex, Biophys. J. 87, 1 (2004).
7. W. Shinoda, M. Mikami, T. Baba, and M. Hato, J. Phys. Chem. B 108, 9346 (2004).
8. S. Paula, A. G. Volkov, A. N. Van Hoek, T. H. Haines, and D. W. Deamer, Biophys. J. 70, 339 (1996).
9. A. M. Smondyrev and M. L. Berkowitz, J. Comput. Chem. 20, 531 (1999).
10. A. M. Smondyrev and M. L. Berkowitz, J. Chem. Phys. 111, 9864 (1999).
11. R. P. Rand and V. A. Parsegian, Biochim. Biophys. Acta 988, 351 (1989).
12. W. L. Jorgensen, J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein, J. Chem. Phys. 79, 926 (1983).
13. J.-P. Ryckaert, G. Ciccotti, and H. J. C. Berendsen, J. Comput. Phys. 23, 327 (1977).
14. H. C. Andersen, J. Comput. Phys. 52, 24 (1983).
15. U. Essmann, L. Perera, M. L. Berkowitz, T. Darden, H. Lee, and L. G. Pedersen, J. Chem. Phys. 103, 8577 (1995).
16. O. Berger, O. Edholm, and F. Jähnig, Biophys. J. 72, 2002 (1997).
17. R. H. Pearson and I. Pascher, Nature (London) 281, 499 (1979).
18. J. M. Seddon, in Phospholipids Handbook, edited by, G. Cevc, (Marcel Dekker, New York, 1993), pp. 909-938.
19. J. F. Nagle and S. Tristram-Nagle, Biochim. Biophys. Acta 1469, 159 (2000).
20. S. Noś, J. Chem. Phys. 81, 511 (1984).
21. W. G. Hoover, Phys. Rev. A 31, 1695 (1985).
22. G. J. Martyna, M. E. Tuckerman, D. J. Tobias, and M. L. Klein, Mol. Phys. 87, 1117 (1996).
23. Y. Zhang, S. E. Feller, B. R. Brooks, and R. W. Pastor, J. Chem. Phys. 103, 10252 (1995).
24. M. Jansen and A. Blume, Biophys. J. 68, 997 (1995).
25. P. Jedlovszky and M. Mezei, J. Am. Chem. Soc. 122, 5125 (2000).
26. W. Shinoda, M. Mikami, T. Baba, and M. Hato, Chem. Phys. Lett. 390, 35 (2004).
27. U. Essmann and M. L. Berkowitz, Biophys. J. 76, 2081 (1999).
28. J. Fischer and S. Lago, J. Chem. Phys. 78, 5750 (1983).
29. A. D. MacKerell, Jr., D. Bashford, M. Bellott et al., J. Phys. Chem. B 102, 3586 (1998).
30. H. Li, R. Elber, and J. E. Straub, J. Biol. Chem. 268, 17908 (1993).
31. P. Schatzberg, J. Polym. Sci., Part C: Polym. Symp. 10, 87 (1965).
32. Y. Graziani and A. Livne, J. Membr. Biol. 7, 275 (1972).
33. J. Andrasko and S. Forśn, Biochem. Biophys. Res. Commun. 60, 813 (1974).
34. A. Finkelstein, J. Gen. Physiol. 68, 127 (1976).
35. M. Bloom, E. Evans, and O. G. Mouritsen, Q. Rev. Biophys. 24, 293 (1991).