-
1
-
-
4243754128
-
-
PRLTAO 0031-9007 10.1103/PhysRevLett.78.2690
-
C. Jarzynski, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.78. 2690 78, 2690 (1997).
-
(1997)
Phys. Rev. Lett.
, vol.78
, pp. 2690
-
-
Jarzynski, C.1
-
2
-
-
4244116139
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.56.5018
-
C. Jarzynski, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.56.5018 56, 5018 (1997).
-
(1997)
Phys. Rev. e
, vol.56
, pp. 5018
-
-
Jarzynski, C.1
-
3
-
-
0000186593
-
-
PLEEE8 1539-3755 10.1103/PhysRevE.61.2361
-
G. E. Crooks, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.61.2361 61, 2361 (2000).
-
(2000)
Phys. Rev. e
, vol.61
, pp. 2361
-
-
Crooks, G.E.1
-
4
-
-
4143087050
-
-
JCPSA6 0021-9606 10.1063/1.1651473
-
S. Park and K. Schulten, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1651473 120, 5946 (2004).
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 5946
-
-
Park, S.1
Schulten, K.2
-
5
-
-
0035826435
-
A "fast growth" method of computing free energy differences
-
DOI 10.1063/1.1353552
-
D. A. Hendrix and C. Jarzynski, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1353552 114, 5974 (2001). (Pubitemid 32419574)
-
(2001)
Journal of Chemical Physics
, vol.114
, Issue.14
, pp. 5974-5981
-
-
Hendrix, D.A.1
Jarzynski, C.2
-
6
-
-
84901046065
-
-
JCPSA6 1742-5468 10.1088/1742-5468/2004/07/P07006
-
E. G. D. Cohen and D. Mauzerall, J. Stat. Mech. JCPSA6 1742-5468 10.1088/1742-5468/2004/07/P07006 (2004) P07006.
-
J. Stat. Mech.
, vol.2004
, pp. 07006
-
-
Cohen, E.G.D.1
Mauzerall, D.2
-
7
-
-
24644450199
-
Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies
-
DOI 10.1038/nature04061
-
D. Collin, F. Ritort, C. Jarzynski, S. B. Smith, I. Tinoco Jr., and C. Bustamante, Nature (London) NATUAS 0028-0836 10.1038/nature04061 437, 231 (2005). (Pubitemid 41294482)
-
(2005)
Nature
, vol.437
, Issue.7056
, pp. 231-234
-
-
Collin, D.1
Ritort, F.2
Jarzynski, C.3
Smith, S.B.4
Tinoco Jr., I.5
Bustamante, C.6
-
8
-
-
19644401497
-
-
PRLTAO 0031-9007 10.1103/PhysRevLett.93.158105
-
O. Braun, A. Hanke, and U. Seifert, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.93.158105 93, 158105 (2004).
-
(2004)
Phys. Rev. Lett.
, vol.93
, pp. 158105
-
-
Braun, O.1
Hanke, A.2
Seifert, U.3
-
9
-
-
26644469551
-
Force spectroscopy of single multidomain biopolymers: A master equation approach
-
DOI 10.1140/epje/i2005-10024-8
-
O. Braun and U. Seifert, Eur. Phys. J. E EPJSFH 1292-8941 10.1140/epje/i2005-10024-8 18, 1 (2005). (Pubitemid 41442646)
-
(2005)
European Physical Journal E
, vol.18
, Issue.1
, pp. 1-13
-
-
Braun, O.1
Seifert, U.2
-
10
-
-
0037076420
-
Energetics of glycerol conduction through aquaglyceroporin GlpF
-
DOI 10.1073/pnas.102649299
-
M. Jensen, S. Park, E. Tajkhorshid, and K. Schulten, Proc. Natl. Acad. Sci. PNASA6 0027-8424 10.1073/pnas.102649299 99, 6731 (2002). (Pubitemid 34527148)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.10
, pp. 6731-6736
-
-
Jensen, M.O.1
Park, S.2
Tajkhorshid, E.3
Schulten, K.4
-
11
-
-
33645666178
-
-
PNASA6 1539-3755 10.1103/PhysRevE.73.046105
-
C. Jarzynski, Phys. Rev. E PNASA6 1539-3755 10.1103/PhysRevE.73.046105 73, 046105 (2006).
-
(2006)
Phys. Rev. e
, vol.73
, pp. 046105
-
-
Jarzynski, C.1
-
12
-
-
33847255930
-
Dissipation: The phase-space perspective
-
DOI 10.1103/PhysRevLett.98.080602
-
R. Kawai, J. M. R. Parrondo, and C. Van den Broeck, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.98.080602 98, 080602 (2007). (Pubitemid 46326134)
-
(2007)
Physical Review Letters
, vol.98
, Issue.8
, pp. 080602
-
-
Kawai, R.1
Parrondo, J.M.R.2
Van Den Broeck, C.3
-
14
-
-
33749551180
-
Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality
-
DOI 10.1063/1.2166379
-
I. Kosztin, B. Barz, and L. Janosi, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2166379 124, 064106 (2006). (Pubitemid 43248009)
-
(2006)
Journal of Chemical Physics
, vol.124
, Issue.6
, pp. 064106
-
-
Kosztin, I.1
Barz, B.2
Janosi, L.3
-
15
-
-
57149107204
-
-
JCPSA6 1539-3755 10.1103/PhysRevE.78.051913
-
M. W. Forney, L. Janosi, and I. Kosztin, Phys. Rev. E JCPSA6 1539-3755 10.1103/PhysRevE.78.051913 78, 051913 (2008).
-
(2008)
Phys. Rev. e
, vol.78
, pp. 051913
-
-
Forney, M.W.1
Janosi, L.2
Kosztin, I.3
-
17
-
-
41149175486
-
Prediction of binding free energy for adsorption of antimicrobial peptide lactoferricin B on a POPC membrane
-
DOI 10.1103/PhysRevE.77.031913
-
V. Vivcharuk, B. Tomberli, I. S. Tolokh, and C. G. Gray, Phys. Rev. E 18PLAF 1539-3755 10.1103/PhysRevE.77.031913 77, 031913 (2008). (Pubitemid 351431343)
-
(2008)
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
, vol.77
, Issue.3
, pp. 031913
-
-
Vivcharuk, V.1
Tomberli, B.2
Tolokh, I.S.3
Gray, C.G.4
-
19
-
-
50649124652
-
-
PRLTAO 0031-9007 10.1103/PhysRevLett.101.098901
-
J. Horowitz and C. Jarzynski, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.101.098901 101, 098901 (2008).
-
(2008)
Phys. Rev. Lett.
, vol.101
, pp. 098901
-
-
Horowitz, J.1
Jarzynski, C.2
-
20
-
-
0002121327
-
-
RMPHAT 0034-6861 10.1103/RevModPhys.15.1
-
S. Chandrasekhar, Rev. Mod. Phys. RMPHAT 0034-6861 10.1103/RevModPhys.15. 1 15, 1 (1943).
-
(1943)
Rev. Mod. Phys.
, vol.15
, pp. 1
-
-
Chandrasekhar, S.1
-
21
-
-
84952104504
-
-
MOPHAM 0026-8976 10.1080/00268978800101881
-
R. Pastor, B. Brooks, and A. Szabo, Mol. Phys. MOPHAM 0026-8976 10.1080/00268978800101881 65, 1409 (1988).
-
(1988)
Mol. Phys.
, vol.65
, pp. 1409
-
-
Pastor, R.1
Brooks, B.2
Szabo, A.3
-
22
-
-
0012002071
-
-
JCPSA6 0021-9606 10.1063/1.1731425
-
B. J. Alder and T. E. Wainwright, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1731425 33, 1439 (1960).
-
(1960)
J. Chem. Phys.
, vol.33
, pp. 1439
-
-
Alder, B.J.1
Wainwright, T.E.2
-
23
-
-
33847005283
-
-
PHRVAO 0031-899X 10.1103/PhysRev.136.A405
-
A. Rahman, Phys. Rev. PHRVAO 0031-899X 10.1103/PhysRev.136.A405 136, A405 (1964).
-
(1964)
Phys. Rev.
, vol.136
, pp. 405
-
-
Rahman, A.1
-
24
-
-
22944467757
-
-
PHRVAO 0031-899X 10.1103/PhysRev.159.98
-
L. Verlet, Phys. Rev. PHRVAO 0031-899X 10.1103/PhysRev.159.98 159, 98 (1967).
-
(1967)
Phys. Rev.
, vol.159
, pp. 98
-
-
Verlet, L.1
-
25
-
-
36049060961
-
-
PHRVAO 0031-899X 10.1103/PhysRev.165.201
-
L. Verlet, Phys. Rev. PHRVAO 0031-899X 10.1103/PhysRev.165.201 165, 201 (1968).
-
(1968)
Phys. Rev.
, vol.165
, pp. 201
-
-
Verlet, L.1
-
26
-
-
0029878720
-
VMD: Visual molecular dynamics
-
DOI 10.1016/0263-7855(96)00018-5
-
W. Humphrey, A. Dalke, and K. Schulten, J. Mol. Graphics JMGRDV 0263-7855 10.1016/0263-7855(96)00018-5 14, 33 (1996). (Pubitemid 26152973)
-
(1996)
Journal of Molecular Graphics
, vol.14
, Issue.1
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
27
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
DOI 10.1002/jcc.20289
-
J. Phillips, R. Braun, W. Wang, J. Gumbart, E. Tajkhorshid, E. Villa, C. Chipot, R. D. Skeel, L. Kale, and K. Schulten, J. Comput. Chem. JCCHDD 0192-8651 10.1002/jcc.20289 26, 1781 (2005). (Pubitemid 43078511)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
29
-
-
0030574785
-
-
CHPLBC 0009-2614 10.1016/0009-2614(96)00058-9
-
T. Simonson, Chem. Phys. Lett. CHPLBC 0009-2614 10.1016/0009-2614(96) 00058-9 250, 450 (1996).
-
(1996)
Chem. Phys. Lett.
, vol.250
, pp. 450
-
-
Simonson, T.1
-
30
-
-
0042885340
-
-
JCPSA6 0021-9606 10.1063/1.1590311
-
S. Park, F. Khalili-Araghi, E. Tajkhorshid, and K. Schulten, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1590311 119, 3559 (2003).
-
(2003)
J. Chem. Phys.
, vol.119
, pp. 3559
-
-
Park, S.1
Khalili-Araghi, F.2
Tajkhorshid, E.3
Schulten, K.4
-
31
-
-
44949157296
-
-
JPCBFK 1520-6106 10.1021/jp0733163
-
D. Minh and J. McCammon, J. Phys. Chem. B JPCBFK 1520-6106 10.1021/jp0733163 112, 5892 (2008).
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 5892
-
-
Minh, D.1
McCammon, J.2
-
32
-
-
33748269730
-
Free energy calculations with non-equilibrium methods: Applications of the Jarzynski relationship
-
DOI 10.1007/s00214-005-0072-2
-
H. Xiong, A. Crespo, M. Marti, D. Estrin, and A. Roitberg, Theor. Chem. Acc. TCACFW 1432-881X 10.1007/s00214-005-0072-2 116, 338 (2006). (Pubitemid 44318435)
-
(2006)
Theoretical Chemistry Accounts
, vol.116
, Issue.1-3
, pp. 338-346
-
-
Xiong, H.1
Crespo, A.2
Marti, M.3
Estrin, D.4
Roitberg, A.E.5
-
34
-
-
0037022329
-
Type I collagen is thermally unstable at body temperature
-
DOI 10.1073/pnas.032307099
-
E. Leikina, M. Mertts, N. Kuznetsova, and S. Leikin, Proc. Natl. Acad. Sci. PNASA6 0027-8424 10.1073/pnas.032307099 99, 1314 (2002). (Pubitemid 34136490)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.3
, pp. 1314-1318
-
-
Leikina, E.1
Mertts, M.V.2
Kuznetsova, N.3
Leikin, S.4
-
35
-
-
0026097503
-
-
FEBLAL 0014-5793 10.1016/0014-5793(91)80069-F
-
G. von Heijne and K. Nishikawa, FEBS Lett. FEBLAL 0014-5793 10.1016/0014-5793(91)80069-F 278, 1 (1991).
-
(1991)
FEBS Lett.
, vol.278
, pp. 1
-
-
Von Heijne, G.1
Nishikawa, K.2
|