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Volumn 7, Issue 9, 2012, Pages

FRUIT, a Scar-Free System for Targeted Chromosomal Mutagenesis, Epitope Tagging, and Promoter Replacement in Escherichia coli and Salmonella enterica

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

EID: 84866939087     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0044841     Document Type: Article
Times cited : (51)

References (33)
  • 1
    • 33745627134 scopus 로고    scopus 로고
    • Recombineering: genetic engineering in bacteria using homologous recombination
    • In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, et al., editors, Hoboken, NJ: John Wiley & Sons, Inc
    • Thomason L, Court DL, Bubunenko M, Costantino N, Wilson H, et al. (2005) Recombineering: genetic engineering in bacteria using homologous recombination. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, et al., editors. Current Protocols in Molecular Biology. Hoboken, NJ: John Wiley & Sons, Inc. 1.16.11-11.16.21.
    • (2005) Current Protocols in Molecular Biology , pp. 11-21
    • Thomason, L.1    Court, D.L.2    Bubunenko, M.3    Costantino, N.4    Wilson, H.5
  • 3
    • 0025326334 scopus 로고
    • Gene splicing by overlap extension: tailor made genes using the polymerase chain reaction
    • Horton RM, Cai Z, Ho SN, Pease L, (1990) Gene splicing by overlap extension: tailor made genes using the polymerase chain reaction. Biotechniques 8: 528-535.
    • (1990) Biotechniques , vol.8 , pp. 528-535
    • Horton, R.M.1    Cai, Z.2    Ho, S.N.3    Pease, L.4
  • 4
    • 0034192263 scopus 로고    scopus 로고
    • DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study
    • Burr T, Mitchell J, Kolb A, Minchin S, Busby S, (2000) DNA sequence elements located immediately upstream of the-10 hexamer in Escherichia coli promoters: a systematic study. Nucleic Acids Res 28: 1864-1870.
    • (2000) Nucleic Acids Res , vol.28 , pp. 1864-1870
    • Burr, T.1    Mitchell, J.2    Kolb, A.3    Minchin, S.4    Busby, S.5
  • 5
    • 13444283630 scopus 로고    scopus 로고
    • Interaction network containing conserved and essential protein complexes in Escherichia coli
    • Butland G, Peregrin-Alvarez JM, Li J, Yang W, Yang X, et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433: 531-537.
    • (2005) Nature , vol.433 , pp. 531-537
    • Butland, G.1    Peregrin-Alvarez, J.M.2    Li, J.3    Yang, W.4    Yang, X.5
  • 7
    • 27644580858 scopus 로고    scopus 로고
    • Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites
    • Wade JT, Reppas NB, Church GM, Struhl K (2005) Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites. Genes Dev: 2619-2630.
    • (2005) Genes Dev , pp. 2619-2630
    • Wade, J.T.1    Reppas, N.B.2    Church, G.M.3    Struhl, K.4
  • 8
    • 51949090627 scopus 로고    scopus 로고
    • Inhibition of Salmonella enterica serovar typhimurium motility and entry into epithelial cells by a protective antilipopolysaccharide monoclonal immunoglobulin A antibody
    • Forbes SJ, Eschmann M, Mantis NJ, (2008) Inhibition of Salmonella enterica serovar typhimurium motility and entry into epithelial cells by a protective antilipopolysaccharide monoclonal immunoglobulin A antibody. Infect Immun 76: 4137-4144.
    • (2008) Infect Immun , vol.76 , pp. 4137-4144
    • Forbes, S.J.1    Eschmann, M.2    Mantis, N.J.3
  • 9
    • 31544450286 scopus 로고    scopus 로고
    • Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
    • Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 0008.
    • (2006) Mol Syst Biol , vol.2 , pp. 0008
    • Baba, T.1    Ara, T.2    Hasegawa, M.3    Takai, Y.4    Okumura, Y.5
  • 10
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL, (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97: 6640-6645.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 11
    • 28644449037 scopus 로고    scopus 로고
    • Efficient and seamless DNA recombineering using a thymidylate synthase A selection system in Escherichia coli
    • Wong QN, Ng VC, Lin MC, Kung HF, Chan D, et al. (2005) Efficient and seamless DNA recombineering using a thymidylate synthase A selection system in Escherichia coli. Nucleic Acids Res 33: e59.
    • (2005) Nucleic Acids Res , vol.33
    • Wong, Q.N.1    Ng, V.C.2    Lin, M.C.3    Kung, H.F.4    Chan, D.5
  • 12
    • 0035810938 scopus 로고    scopus 로고
    • High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides
    • Ellis HM, Yu D, DiTizio T, Court DL, (2001) High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides. Proc Natl Acad Sci USA 98: 6742-6746.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 6742-6746
    • Ellis, H.M.1    Yu, D.2    DiTizio, T.3    Court, D.L.4
  • 13
    • 78049387115 scopus 로고    scopus 로고
    • A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407
    • Crossman LC, Chaudhuri RR, Beatson SA, Wells TJ, Desvaux M, et al. (2010) A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407. J Bacteriol 192: 5822-5831.
    • (2010) J Bacteriol , vol.192 , pp. 5822-5831
    • Crossman, L.C.1    Chaudhuri, R.R.2    Beatson, S.A.3    Wells, T.J.4    Desvaux, M.5
  • 14
    • 73649127936 scopus 로고    scopus 로고
    • Short-term signatures of evolutionary change in the Salmonella enterica serovar Typhimurium 14028 genome
    • Jarvik T, Smillie C, Groisman EA, Ochman H, (2010) Short-term signatures of evolutionary change in the Salmonella enterica serovar Typhimurium 14028 genome. J Bacteriol 192: 560-567.
    • (2010) J Bacteriol , vol.192 , pp. 560-567
    • Jarvik, T.1    Smillie, C.2    Groisman, E.A.3    Ochman, H.4
  • 15
    • 0034903337 scopus 로고    scopus 로고
    • In vivo site-directed mutagenesis using oligonucleotides
    • Storici F, Lewis LK, Resnick MA, (2001) In vivo site-directed mutagenesis using oligonucleotides. Nat Biotechnol 19: 773-776.
    • (2001) Nat Biotechnol , vol.19 , pp. 773-776
    • Storici, F.1    Lewis, L.K.2    Resnick, M.A.3
  • 16
    • 0028841139 scopus 로고
    • Use of polymerase chain reaction epitope tagging for protein tagging in Saccharomyces cerevisiae
    • Schneider BL, Seufert W, Steiner B, Yang QH, Futcher AB, (1995) Use of polymerase chain reaction epitope tagging for protein tagging in Saccharomyces cerevisiae. Yeast 11: 1265-1274.
    • (1995) Yeast , vol.11 , pp. 1265-1274
    • Schneider, B.L.1    Seufert, W.2    Steiner, B.3    Yang, Q.H.4    Futcher, A.B.5
  • 17
    • 0027254760 scopus 로고
    • Sequencing and characterization of a gene cluster encoding the enzymes for L-rhamnose metabolism in Escherichia coli
    • Moralejo P, Egan SM, Hidalgo E, Aguilar J, (1993) Sequencing and characterization of a gene cluster encoding the enzymes for L-rhamnose metabolism in Escherichia coli. J Bacteriol 175: 5585-8894.
    • (1993) J Bacteriol , vol.175 , pp. 5585-8894
    • Moralejo, P.1    Egan, S.M.2    Hidalgo, E.3    Aguilar, J.4
  • 19
    • 38349115643 scopus 로고    scopus 로고
    • Recombineering with tolC as a selectable/counter-selectable marker: remodeling the rRNA operons of Escherichia coli
    • DeVito JA, (2008) Recombineering with tolC as a selectable/counter-selectable marker: remodeling the rRNA operons of Escherichia coli. Nucleic Acids Res 36: e4.
    • (2008) Nucleic Acids Res , vol.36
    • DeVito, J.A.1
  • 21
    • 62149114114 scopus 로고    scopus 로고
    • Rapid oligonucleotide-based recombineering of the chromosome of Salmonella enterica
    • Gerlach RG, Jäckel D, Hölzer SU, Hensel M, (2009) Rapid oligonucleotide-based recombineering of the chromosome of Salmonella enterica. Appl Environ Microbiol 75: 1575-1580.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 1575-1580
    • Gerlach, R.G.1    Jäckel, D.2    Hölzer, S.U.3    Hensel, M.4
  • 22
    • 46949111513 scopus 로고    scopus 로고
    • Highly efficient method for introducing successive multiple scarless gene deletions and markerless gene insertions into the Yersinia pestis chromosome
    • Sun W, Wang S, Curtiss R, (2008) Highly efficient method for introducing successive multiple scarless gene deletions and markerless gene insertions into the Yersinia pestis chromosome. Appl Environ Microbiol 74: 4241-4245.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 4241-4245
    • Sun, W.1    Wang, S.2    Curtiss, R.3
  • 23
    • 73449097174 scopus 로고    scopus 로고
    • Gene doctoring: a method for recombineering in laboratory and pathogenic Escherichia coli strains
    • Lee DJ, Bingle LE, Heurlier K, Pallen MJ, Penn CW, et al. (2009) Gene doctoring: a method for recombineering in laboratory and pathogenic Escherichia coli strains. BMC Microbiol 9: 252.
    • (2009) BMC Microbiol , vol.9 , pp. 252
    • Lee, D.J.1    Bingle, L.E.2    Heurlier, K.3    Pallen, M.J.4    Penn, C.W.5
  • 24
    • 79251538660 scopus 로고    scopus 로고
    • Rapid and highly efficient method for scarless mutagenesis within the Salmonella enterica chromosome
    • Blank K, Hensel M, Gerlach RG, (2011) Rapid and highly efficient method for scarless mutagenesis within the Salmonella enterica chromosome. PLoS One 6: e15763.
    • (2011) PLoS One , vol.6
    • Blank, K.1    Hensel, M.2    Gerlach, R.G.3
  • 25
    • 49249139249 scopus 로고    scopus 로고
    • Rapid and efficient construction of markerless deletions in the Escherichia coli genome
    • Yu BJ, Kang KH, Lee JH, Sung BH, Kim MS, et al. (2008) Rapid and efficient construction of markerless deletions in the Escherichia coli genome. Nucleic Acids Res 36: e84.
    • (2008) Nucleic Acids Res , vol.36
    • Yu, B.J.1    Kang, K.H.2    Lee, J.H.3    Sung, B.H.4    Kim, M.S.5
  • 26
    • 36549033762 scopus 로고    scopus 로고
    • Scarless and site-directed mutagenesis in Salmonella enteritidis chromosome
    • Cox MM, Layton SL, Jiang T, Cole K, Hargis BM, et al. (2007) Scarless and site-directed mutagenesis in Salmonella enteritidis chromosome. BMC Biotechnol 7: 59.
    • (2007) BMC Biotechnol , vol.7 , pp. 59
    • Cox, M.M.1    Layton, S.L.2    Jiang, T.3    Cole, K.4    Hargis, B.M.5
  • 27
    • 79955159135 scopus 로고    scopus 로고
    • En passant mutagenesis: a two step markerless red recombination system
    • Tischer BK, Smith GA, Osterrieder N, (2010) En passant mutagenesis: a two step markerless red recombination system. Methods Mol Biol 634: 421-430.
    • (2010) Methods Mol Biol , vol.634 , pp. 421-430
    • Tischer, B.K.1    Smith, G.A.2    Osterrieder, N.3
  • 28
    • 33644945692 scopus 로고    scopus 로고
    • PCR-based tandem epitope tagging system for Escherichia coli genome engineering
    • Cho BK, Knight EM, Palsson BO, (2006) PCR-based tandem epitope tagging system for Escherichia coli genome engineering. Biotechniques 40: 67-72.
    • (2006) Biotechniques , vol.40 , pp. 67-72
    • Cho, B.K.1    Knight, E.M.2    Palsson, B.O.3
  • 30
    • 42549102217 scopus 로고    scopus 로고
    • Expanding the repertoire of plasmids for PCR-mediated epitope tagging in yeast
    • Moqtaderi Z, Struhl K, (2008) Expanding the repertoire of plasmids for PCR-mediated epitope tagging in yeast. Yeast 25: 287-292.
    • (2008) Yeast , vol.25 , pp. 287-292
    • Moqtaderi, Z.1    Struhl, K.2
  • 31
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine MS, McKenzie A 3rd, Demarini DJ, Shah NG, Wach A, et al (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14: 953-961.
    • (1998) Yeast , vol.14 , pp. 953-961
    • Longtine, M.S.1    McKenzie 3rd, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5
  • 32
    • 0036923450 scopus 로고    scopus 로고
    • Regulation of the Escherichia coli allantoin regulon: coordinated function of the repressor AllR and the activator AllS
    • Rintoul MR, Cusa E, Baldomà L, Badia J, Reitzer L, et al. (2002) Regulation of the Escherichia coli allantoin regulon: coordinated function of the repressor AllR and the activator AllS. J Mol Biol 324: 599-610.
    • (2002) J Mol Biol , vol.324 , pp. 599-610
    • Rintoul, M.R.1    Cusa, E.2    Baldomà, L.3    Badia, J.4    Reitzer, L.5
  • 33
    • 33846842428 scopus 로고    scopus 로고
    • Adaptation to the host environment: regulation of the SPI1 type III secretion system in Salmonella enterica serovar Typhimurium
    • Ellermeier JR, Slauch JM, (2007) Adaptation to the host environment: regulation of the SPI1 type III secretion system in Salmonella enterica serovar Typhimurium. Curr Opin Microbiol 10: 24-29.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 24-29
    • Ellermeier, J.R.1    Slauch, J.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.